arXiv subjects

Carine M. Rebello

Publications and source records attributed to Carine M. Rebello.

6 recordsLinked to original sources

arXiv2026

MultiPUFFIN: A Multimodal Domain-Constrained Foundation Model for Molecular Property Prediction of Small Molecules

MultiPUFFIN is a domain-informed multimodal foundation model for predicting thermophysical properties of small molecules, addressing a critical gap in chemical engineering, drug discovery, and materials science. Existing molecular foundation models pretrain on millions of molecules to learn general-purpose representations, but their standard MLP output layers impose no physical constraints, vapor pressure predictions may violate monotonic temperature dependence, and viscosity curves may lack the functional form required by process simulators. Domain-informed approaches that guarantee thermodynamic consistency have remained limited to single properties and small datasets, whereas multimodal foundation models have focused on biological activity rather than thermophysical properties. MultiPUFFIN fills this gap by fusing SMILES sequences, 2D molecular graphs, and 3D conformer geometries through bidirectional cross-modal attention and gated fusion, supplemented by auxiliary encoders for experimental conditions and molecular descriptors. The backbone is pretrained on 500,000 unlabelled PubChem molecules using three complementary self-supervised objectives. A condition-aware refinement stack of five conditioners (temperature, pH, pressure, polymorph, and measurement method) routes each property to a four-head tournament that selects the best-performing thermodynamically informed head for that property. MultiPUFFIN achieves a mean test R2 of 0.784 and outperforms fine-tuned ChemBERTa-2 on all nine properties despite training on roughly 2,000x fewer labeled molecules.

cs.LG↗

arXiv2023

Efficient hybrid modeling and sorption model discovery for non-linear advection-diffusion-sorption systems: A systematic scientific machine learning approach

This study presents a systematic machine learning approach for creating efficient hybrid models and discovering sorption uptake models in non-linear advection-diffusion-sorption systems. It demonstrates an effective method to train these complex systems using gradient based optimizers, adjoint sensitivity analysis, and JIT-compiled vector Jacobian products, combined with spatial discretization and adaptive integrators. Sparse and symbolic regression were employed to identify missing functions in the artificial neural network. The robustness of the proposed method was tested on an in-silico data set of noisy breakthrough curve observations of fixed-bed adsorption, resulting in a well-fitted hybrid model. The study successfully reconstructed sorption uptake kinetics using sparse and symbolic regression, and accurately predicted breakthrough curves using identified polynomials, highlighting the potential of the proposed framework for discovering sorption kinetic law structures.

cs.CE↗

arXiv2023

Bio-inspired Algorithms in the Optimisation of Wireless Sensor Networks

WSN are a growing technology in industrial and personal use fields. The Quality of Service (QoS) of WSN is associated to the architecture of WSN nodes and network design. In this work, the composition of the nodes and network is analysed. The success of WSN is related to the maximisation of the lifetime and coverage of the device, allied to the minimisation of energy consumption and number of nodes, guaranteeing a good network connectivity and high transmission. The most common WSN issues are presented and reviewed. The most suitable optimisation technique is Multi-objective (MOO) which is exemplified in this work from complex multi-objective functions which include several WSN problems. The second part of this review focus on bio-inspired algorithms in WSN optimisation: Genetic Algorithms (GA), Particles Swarm Optimisation (PSO) and Ant Colony Optimisation (ACO). Other less common methods are also present and related to WSN issues.

cs.NI↗

arXiv2022

A nested loop for simultaneous model topology screening, parameters estimation, and identification of the optimal number of experiments: Application to a Simulated Moving Bed unit

Simulated Moving Bed (SMB) chromatography is a well-known technique for the resolution of several high-value-added compounds. Parameters identification and model topology definition are arduous when one is dealing with complex systems such as a Simulated Moving Bed unit. Moreover, the large number of experiments necessary might be an expansive-long process. Hence, this work proposes a novel methodology for parameter estimation, screening the most suitable topology of the models sink-source (defined by the adsorption isotherm equation) and defining the minimum number of experiments necessary to identify the model. Therefore, a nested loop optimization problem is proposed with three levels considering the three main goals of the work: parameters estimation; topology screening by isotherm definition; minimum number of experiments necessary to yield a precise model. The proposed methodology emulated a real scenario by introducing noise in the data and using a Software-in-the-Loop (SIL) approach. Data reconciliation and uncertainty evaluation add robustness to the parameter estimation adding precision and reliability to the model. The methodology is validated considering experimental data from literature apart from the samples applied for parameter estimation, following a cross-validation. The results corroborate that it is possible to carry out trustworthy parameter estimation directly from an SMB unit with minimal system knowledge.

physics.chem-ph↗

arXiv2022

A new Reinforcement Learning framework to discover natural flavor molecules

The flavor is the focal point in the flavor industry, which follows social tendencies and behaviors. The research and development of new flavoring agents and molecules are essential in this field. On the other hand, the development of natural flavors plays a critical role in modern society. In light of this, the present work proposes a novel framework based on Scientific Machine Learning to undertake an emerging problem in flavor engineering and industry. Therefore, this work brings an innovative methodology to design new natural flavor molecules. The molecules are evaluated regarding the synthetic accessibility, the number of atoms, and the likeness to a natural or pseudo-natural product.

cs.LG↗

arXiv2022

A Robust Scientific Machine Learning for Optimization: A Novel Robustness Theorem

Scientific machine learning (SciML) is a field of increasing interest in several different application fields. In an optimization context, SciML-based tools have enabled the development of more efficient optimization methods. However, implementing SciML tools for optimization must be rigorously evaluated and performed with caution. This work proposes the deductions of a robustness test that guarantees the robustness of multiobjective SciML-based optimization by showing that its results respect the universal approximator theorem. The test is applied in the framework of a novel methodology which is evaluated in a series of benchmarks illustrating its consistency. Moreover, the proposed methodology results are compared with feasible regions of rigorous optimization, which requires a significantly higher computational effort. Hence, this work provides a robustness test for guaranteed robustness in applying SciML tools in multiobjective optimization with lower computational effort than the existent alternative.

math.OC↗