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Carine Ribeiro dos Santos

Publications and source records attributed to Carine Ribeiro dos Santos.

2 recordsLinked to original sources

Risk-Sensitive Reward Composition for Conditional GFlowNets

Generative Flow Networks (GFlowNets) for structure-based drug design condition on one rigid protein structure. A flexible target holds several distinct structural shapes, its conformations, each occupied for a fraction of the simulation time. Scoring a candidate against all of them raises an open question: how do K scores become one reward? The designer cannot choose arbitrarily. Populations carry simulation error, and biology dictates which conformations are deal-breakers, so a candidate that fails one is disqualified, not merely ranked lower. No standard rule captures this. We compose the reward from a conditional value-at-risk (CVaR), a worst-case score rule, and an ambiguity radius expressing distrust in the stated weights. Together, these define a family of targets, amortised by a single conditional GFlowNet. We answer whether such a sampler can be trained on fully enumerable synthetic worlds, where every error is exact rather than estimated. Pricing the tail rather than averaging moves 2-10 times more mass to candidates that pass every conformation. One network covers the family to within 0.37-2.7x the error of a perfect sampler. An exact-KL oracle, a copy trained on the true target, shows if a shortfall is the optimiser's or the architecture's. When good candidates are rare, exploration decides: injecting unseen states finds 0.987-1.000 of good regions, while reweighting visited finds 0.35-0.76.

cs.CE↗

Discovery of Novel Reticular Materials for Carbon Dioxide Capture using GFlowNets

Artificial intelligence holds promise to improve materials discovery. GFlowNets are an emerging deep learning algorithm with many applications in AI-assisted discovery. By using GFlowNets, we generate porous reticular materials, such as metal organic frameworks and covalent organic frameworks, for applications in carbon dioxide capture. We introduce a new Python package (matgfn) to train and sample GFlowNets. We use matgfn to generate the matgfn-rm dataset of novel and diverse reticular materials with gravimetric surface area above 5000 m$^2$/g. We calculate single- and two-component gas adsorption isotherms for the top-100 candidates in matgfn-rm. These candidates are novel compared to the state-of-art ARC-MOF dataset and rank in the 90th percentile in terms of working capacity compared to the CoRE2019 dataset. We discover 15 materials outperforming all materials in CoRE2019.

cs.CE↗