arXiv subjects

Carlos Garcia Jurado Suarez

Publications and source records attributed to Carlos Garcia Jurado Suarez.

5 recordsLinked to original sources

arXiv2026

Aleena: Alignment Agent for Research Software Engineering Collaborations

Research software collaborations span meetings, informal chats, pull requests, and GitHub issues. A decision surfaced in a Slack thread, refined in a meeting, and implemented in a pull request can lose its original rationale across these artifacts, leaving domain researchers and research software engineers with divergent mental models of project intent, ownership, and scientific assumptions. We argue that alignment in research software engineering is a continuous lifecycle problem, and that agentic AI can support stakeholder alignment and project-state tracking without replacing human decision-making. We present Aleena, an open-source lifecycle alignment agent that uses GitHub as a shared collaboration surface, transforming multi-modal stakeholder interactions into structured project records that surface risks, track open questions, and preserve decision continuity. Grounded in university-based research software engineering center experiences, this paper presents the motivating problem, system design, prototype, and illustrative lifecycle scenarios for Aleena.

cs.SE↗

arXiv2026

LLMoxie: Exploring Agentic AI for Scientific Software Development

In this paper, we describe LLMoxie, an institutional AI platform whose three-tiered architecture supports multi-cloud and on-premise inference, a LiteLLM/MLflow control plane for authentication, budgeting, PII masking, and observability, and an application augmentation layer for AI coding agents. Layered on top, an open-source RSE-Plugins ecosystem encodes accumulated RSE knowledge as a Plugin-Agent-Skill hierarchy spanning scientific Python practice, domain-specific knowledge, a six-phase research-and-implement workflow, and project lifecycle management. Scientific software is judged less by raw code quality than by whether it can be cited, audited, reproduced, and extended. Off-the-shelf AI coding agents, optimized against commercial software benchmarks, are poorly calibrated for this setting: they ignore the conventions of the scientific Python libraries they invoke, mishandle sensitive or embargoed data, and leave decision trails that are difficult to reconstruct after the fact. We report on twenty months of practice at a university-based research software engineering (RSE) center, where RSEs embedded across astronomy, earth and climate science, agriculture, and health projects worked to close this gap. We characterize the recurring infrastructure, governance, and process challenges of adopting Agentic AI inside a multi-domain RSE center, describe the platform and plugin design, and distill operational lessons from real scientific software deployments. Together, the platform and plugins shift AI coding agents from generic code generators into domain-aware collaborators that respect community norms and produce auditable provenance of technical reasoning.

cs.SE↗

arXiv2025

Structured Captions Improve Prompt Adherence in Text-to-Image Models (Re-LAION-Caption 19M)

We argue that generative text-to-image models often struggle with prompt adherence due to the noisy and unstructured nature of large-scale datasets like LAION-5B. This forces users to rely heavily on prompt engineering to elicit desirable outputs. In this work, we propose that enforcing a consistent caption structure during training can significantly improve model controllability and alignment. We introduce Re-LAION-Caption 19M, a high-quality subset of Re-LAION-5B, comprising 19 million 1024x1024 images with captions generated by a Mistral 7B Instruct-based LLaVA-Next model. Each caption follows a four-part template: subject, setting, aesthetics, and camera details. We fine-tune PixArt-$Σ$ and Stable Diffusion 2 using both structured and randomly shuffled captions, and show that structured versions consistently yield higher text-image alignment scores using visual question answering (VQA) models. The dataset is publicly available at https://huggingface.co/datasets/supermodelresearch/Re-LAION-Caption19M.

cs.CV↗

arXiv2025

A Review of Cloud Computing in Seismology

Seismology has entered the petabyte era, driven by decades of continuous recordings of broadband networks, the increase in nodal seismic experiments, and the recent emergence of Distributed Acoustic Sensing (DAS). This review explains how commercial clouds - AWS, Google Cloud, and Azure - by providing object storage, elastic compute, and managed databases, enable researchers to "bring the code to the data," thereby overcoming traditional HPC solutions' bandwidth and capacity limitations. After literature reviews of cloud concepts and their research applications in seismology, we illustrate the capacities of cloud-native workflows using two canonical end-to-end demonstrations: 1) ambient noise seismology and cross-correlation, and 2) earthquake detection, discrimination, and phase picking. Both workflows utilized S3 for streaming I/O and DocumentDB for provenance, demonstrating that cloud throughput can rival on-premises HPC at comparable costs, scanning 100 TBs to 1.3 PBs of seismic data in a few hours or days of processing. The review also discusses research and education initiatives, the reproducibility benefits of containers, and cost pitfalls (e.g., egress, I/O fees) of energy-intensive seismological research computing. While designing cloud pipelines remains non-trivial, partnerships with research software engineers enable converting domain code into scalable, automated, and environmentally conscious solutions for next-generation seismology.

physics.geo-ph↗

arXiv2014

ICE: Enabling Non-Experts to Build Models Interactively for Large-Scale Lopsided Problems

Quick interaction between a human teacher and a learning machine presents numerous benefits and challenges when working with web-scale data. The human teacher guides the machine towards accomplishing the task of interest. The learning machine leverages big data to find examples that maximize the training value of its interaction with the teacher. When the teacher is restricted to labeling examples selected by the machine, this problem is an instance of active learning. When the teacher can provide additional information to the machine (e.g., suggestions on what examples or predictive features should be used) as the learning task progresses, then the problem becomes one of interactive learning. To accommodate the two-way communication channel needed for efficient interactive learning, the teacher and the machine need an environment that supports an interaction language. The machine can access, process, and summarize more examples than the teacher can see in a lifetime. Based on the machine's output, the teacher can revise the definition of the task or make it more precise. Both the teacher and the machine continuously learn and benefit from the interaction. We have built a platform to (1) produce valuable and deployable models and (2) support research on both the machine learning and user interface challenges of the interactive learning problem. The platform relies on a dedicated, low-latency, distributed, in-memory architecture that allows us to construct web-scale learning machines with quick interaction speed. The purpose of this paper is to describe this architecture and demonstrate how it supports our research efforts. Preliminary results are presented as illustrations of the architecture but are not the primary focus of the paper.

cs.AI↗