arXiv subjects

Carlos M. Carvalho

Publications and source records attributed to Carlos M. Carvalho.

16 recordsLinked to original sources

arXiv2025

Lower-dimensional posterior density and cluster summaries for overparameterized Bayesian models

The usefulness of Bayesian models for density and cluster estimation is well established across multiple literatures. However, there is still a known tension between the use of simpler, more interpretable models and more flexible, complex ones. In this paper, we propose a novel method that integrates these two approaches by projecting the fit of a flexible, overparameterized model onto a lower-dimensional parametric surrogate, which serves as a summary. This process increases interpretability while preserving most of the fit of the original model. Our approach involves three main steps. First, we fit the data using nonparametric or overparameterized models. Second, we project the posterior predictive distribution of the original model onto a sequence of parametric summary point estimates with varying dimensions using a decision-theoretic approach. Finally, given the parametric summary estimate, obtained in the second step, that best approximates the original model, we construct uncertainty quantification for this summary by projecting the original posterior distribution. We demonstrate the effectiveness of our method for generating summaries for both nonparametric and overparameterized models, delivering both point estimates and uncertainty quantification for density and cluster summaries across synthetic and real datasets.

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arXiv2025

Minnesota BART

Vector autoregression (VAR) models are widely used for forecasting and macroeconomic analysis, yet they remain limited by their reliance on a linear parameterization. Recent research has introduced nonparametric alternatives, such as Bayesian additive regression trees (BART), which provide flexibility without strong parametric assumptions. However, existing BART-based frameworks do not account for time dependency or allow for sparse estimation in the construction of regression tree priors, leading to noisy and inefficient high-dimensional representations. This paper introduces a sparsity-inducing Dirichlet hyperprior on the regression tree's splitting probabilities, allowing for automatic variable selection and high-dimensional VARs. Additionally, we propose a structured shrinkage prior that decreases the probability of splitting on higher-order lags, aligning with the Minnesota prior's principles. Empirical results demonstrate that our approach improves predictive accuracy over the baseline BART prior and Bayesian VAR (BVAR), particularly in capturing time-dependent relationships and enhancing density forecasts. These findings highlight the potential of developing domain-specific nonparametric methods in macroeconomic forecasting.

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arXiv2022

Bayesian inference for treatment effects under nested subsets of controls

When constructing a model to estimate the causal effect of a treatment, it is necessary to control for other factors which may have confounding effects. Because the ignorability assumption is not testable, however, it is usually unclear which minimal set of controls is appropriate -- as is their appropriate functional form in the model -- and effect estimation can be sensitive to these choices. A common approach in this case is to fit several models, each with a different control specification (under the assumption that the available controls are sufficient but possibly not all necessary to deconfound the treatment effect), but it is difficult to reconcile inference for the treatment effect under the multiple resulting posterior distributions. Therefore we propose a two-stage approach to measure the sensitivity of effect estimation with respect to control specification. In the first stage, a model is fit with all available controls using a prior carefully selected to adjust for confounding. In the second stage, posterior distributions are calculated for the treatment effect under submodels of nested sets of controls using projected posteriors under the full model, providing valid Bayesian inference. We demonstrate how our approach can be used to detect influential confounders in a dataset, and apply it in a sensitivity analysis of an observational study measuring the effect of legalized abortion on crime rates.

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arXiv2021

Decoupling Shrinkage and Selection in Gaussian Linear Factor Analysis

Factor Analysis is a popular method for modeling dependence in multivariate data. However, determining the number of factors and obtaining a sparse orientation of the loadings are still major challenges. In this paper, we propose a decision-theoretic approach that brings to light the relation between a sparse representation of the loadings and factor dimension. This relation is done through a summary from information contained in the multivariate posterior. To construct such summary, we introduce a three-step approach. In the first step, the model is fitted with a conservative factor dimension. In the second step, a series of sparse point-estimates, with a decreasing number of factors, is obtained by minimizing an expected predictive loss function. In step three, the degradation in utility in relation to the sparse loadings and factor dimensions is displayed in the posterior summary. The findings are illustrated with applications in classical data from the Factor Analysis literature. We used different prior choices and factor dimensions to demonstrate the flexibility of the proposed method.

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arXiv2020

Estimating heterogeneous effects of continuous exposures using Bayesian tree ensembles: revisiting the impact of abortion rates on crime

In estimating the causal effect of a continuous exposure or treatment, it is important to control for all confounding factors. However, most existing methods require parametric specification for how control variables influence the outcome or generalized propensity score, and inference on treatment effects is usually sensitive to this choice. Additionally, it is often the goal to estimate how the treatment effect varies across observed units. To address this gap, we propose a semiparametric model using Bayesian tree ensembles for estimating the causal effect of a continuous treatment of exposure which (i) does not require a priori parametric specification of the influence of control variables, and (ii) allows for identification of effect modification by pre-specified moderators. The main parametric assumption we make is that the effect of the exposure on the outcome is linear, with the steepness of this relationship determined by a nonparametric function of the moderators, and we provide heuristics to diagnose the validity of this assumption. We apply our methods to revisit a 2001 study of how abortion rates affect incidence of crime.

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arXiv2020

Model interpretation through lower-dimensional posterior summarization

Nonparametric regression models have recently surged in their power and popularity, accompanying the trend of increasing dataset size and complexity. While these models have proven their predictive ability in empirical settings, they are often difficult to interpret and do not address the underlying inferential goals of the analyst or decision maker. In this paper, we propose a modular two-stage approach for creating parsimonious, interpretable summaries of complex models which allow freedom in the choice of modeling technique and the inferential target. In the first stage a flexible model is fit which is believed to be as accurate as possible. In the second stage, lower-dimensional summaries are constructed by projecting draws from the distribution onto simpler structures. These summaries naturally come with valid Bayesian uncertainty estimates. Further, since we use the data only once to move from prior to posterior, these uncertainty estimates remain valid across multiple summaries and after iteratively refining a summary. We apply our method and demonstrate its strengths across a range of simulated and real datasets. Code to reproduce the examples shown is avaiable at github.com/spencerwoody/ghost

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arXiv2020

Targeted Smooth Bayesian Causal Forests: An analysis of heterogeneous treatment effects for simultaneous versus interval medical abortion regimens over gestation

We introduce Targeted Smooth Bayesian Causal Forests (tsBCF), a nonparametric Bayesian approach for estimating heterogeneous treatment effects which vary smoothly over a single covariate in the observational data setting. The tsBCF method induces smoothness by parameterizing terminal tree nodes with smooth functions, and allows for separate regularization of treatment effects versus prognostic effect of control covariates. Smoothing parameters for prognostic and treatment effects can be chosen to reflect prior knowledge or tuned in a data-dependent way. We use tsBCF to analyze a new clinical protocol for early medical abortion. Our aim is to assess relative effectiveness of simultaneous versus interval administration of mifepristone and misoprostol over the first nine weeks of gestation. The model reflects our expectation that the relative effectiveness varies smoothly over gestation, but not necessarily over other covariates. We demonstrate the performance of the tsBCF method on benchmarking experiments. Software for tsBCF is available at https://github.com/jestarling/tsbcf/.

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arXiv2019

BART with Targeted Smoothing: An analysis of patient-specific stillbirth risk

This article introduces BART with Targeted Smoothing, or tsBART, a new Bayesian tree-based model for nonparametric regression. The goal of tsBART is to introduce smoothness over a single target covariate t, while not necessarily requiring smoothness over other covariates x. TsBART is based on the Bayesian Additive Regression Trees (BART) model, an ensemble of regression trees. TsBART extends BART by parameterizing each tree's terminal nodes with smooth functions of t, rather than independent scalars. Like BART, tsBART captures complex nonlinear relationships and interactions among the predictors. But unlike BART, tsBART guarantees that the response surface will be smooth in the target covariate. This improves interpretability and helps regularize the estimate. After introducing and benchmarking the tsBART model, we apply it to our motivating example: pregnancy outcomes data from the National Center for Health Statistics. Our aim is to provide patient-specific estimates of stillbirth risk across gestational age (t), based on maternal and fetal risk factors (x). Obstetricians expect stillbirth risk to vary smoothly over gestational age, but not necessarily over other covariates, and tsBART has been designed precisely to reflect this structural knowledge. The results of our analysis show the clear superiority of the tsBART model for quantifying stillbirth risk, thereby providing patients and doctors with better information for managing the risk of perinatal mortality. All methods described here are implemented in the R package tsbart.

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arXiv2016

Regularization and confounding in linear regression for treatment effect estimation

This paper investigates the use of regularization priors in the context of treatment effect estimation using observational data where the number of control variables is large relative to the number of observations. First, the phenomenon of regularization-induced confounding is introduced, which refers to the tendency of regularization priors to adversely bias treatment effect estimates by over-shrinking control variable regression coefficients. Then, a simultaneous regression model is presented which permits regularization priors to be specified in a way that avoids this unintentional re-confounding. The new model is illustrated on synthetic and empirical data.

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arXiv2016

Sparse Mean-Variance Portfolios: A Penalized Utility Approach

This paper considers mean-variance optimization under uncertainty, specifically when one desires a sparsified set of optimal portfolio weights. From the standpoint of a Bayesian investor, our approach produces a small portfolio from many potential assets while acknowledging uncertainty in asset returns and parameter estimates. We demonstrate the procedure using static and dynamic models for asset returns.

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arXiv2015

Optimal ETF Selection for Passive Investing

This paper considers the problem of isolating a small number of exchange traded funds (ETFs) that suffice to capture the fundamental dimensions of variation in U.S. financial markets. First, the data is fit to a vector-valued Bayesian regression model, which is a matrix-variate generalization of the well known stochastic search variable selection (SSVS) of George and McCulloch (1993). ETF selection is then performed using the decoupled shrinkage and selection (DSS) procedure described in Hahn and Carvalho (2015), adapted in two ways: to the vector-response setting and to incorporate stochastic covariates. The selected set of ETFs is obtained under a number of different penalty and modeling choices. Optimal portfolios are constructed from selected ETFs by maximizing the Sharpe ratio posterior mean, and they are compared to the (unknown) optimal portfolio based on the full Bayesian model. We compare our selection results to popular ETF advisor Wealthfront.com. Additionally, we consider selecting ETFs by modeling a large set of mutual funds.

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arXiv2014

Decoupling shrinkage and selection in Bayesian linear models: a posterior summary perspective

Selecting a subset of variables for linear models remains an active area of research. This paper reviews many of the recent contributions to the Bayesian model selection and shrinkage prior literature. A posterior variable selection summary is proposed, which distills a full posterior distribution over regression coefficients into a sequence of sparse linear predictors.

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arXiv2013

A Tractable State-Space Model for Symmetric Positive-Definite Matrices

Bayesian analysis of state-space models includes computing the posterior distribution of the system's parameters as well as filtering, smoothing, and predicting the system's latent states. When the latent states wander around $\mathbb{R}^n$ there are several well-known modeling components and computational tools that may be profitably combined to achieve these tasks. However, there are scenarios, like tracking an object in a video or tracking a covariance matrix of financial assets returns, when the latent states are restricted to a curve within $\mathbb{R}^n$ and these models and tools do not immediately apply. Within this constrained setting, most work has focused on filtering and less attention has been paid to the other aspects of Bayesian state-space inference, which tend to be more challenging. To that end, we present a state-space model whose latent states take values on the manifold of symmetric positive-definite matrices and for which one may easily compute the posterior distribution of the latent states and the system's parameters, in addition to filtered distributions and one-step ahead predictions. Deploying the model within the context of finance, we show how one can use realized covariance matrices as data to predict latent time-varying covariance matrices. This approach out-performs factor stochastic volatility.

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arXiv2013

Efficient Data Augmentation in Dynamic Models for Binary and Count Data

Dynamic linear models with Gaussian observations and Gaussian states lead to closed-form formulas for posterior simulation. However, these closed-form formulas break down when the response or state evolution ceases to be Gaussian. Dynamic, generalized linear models exemplify a class of models for which this is the case, and include, amongst other models, dynamic binomial logistic regression and dynamic negative binomial regression. Finding and appraising posterior simulation techniques for these models is important since modeling temporally correlated categories or counts is useful in a variety of disciplines, including ecology, economics, epidemiology, medicine, and neuroscience. In this paper, we present one such technique, Pólya-Gamma data augmentation, and compare it against two competing methods. We find that the Pólya-Gamma approach works well for dynamic logistic regression and for dynamic negative binomial regression when the count sizes are small. Supplementary files are provided for replicating the benchmarks.

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arXiv2010

Particle Learning and Smoothing

Particle learning (PL) provides state filtering, sequential parameter learning and smoothing in a general class of state space models. Our approach extends existing particle methods by incorporating the estimation of static parameters via a fully-adapted filter that utilizes conditional sufficient statistics for parameters and/or states as particles. State smoothing in the presence of parameter uncertainty is also solved as a by-product of PL. In a number of examples, we show that PL outperforms existing particle filtering alternatives and proves to be a competitor to MCMC.

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arXiv2009

Flexible covariance estimation in graphical Gaussian models

In this paper, we propose a class of Bayes estimators for the covariance matrix of graphical Gaussian models Markov with respect to a decomposable graph $G$. Working with the $W_{P_G}$ family defined by Letac and Massam [Ann. Statist. 35 (2007) 1278--1323] we derive closed-form expressions for Bayes estimators under the entropy and squared-error losses. The $W_{P_G}$ family includes the classical inverse of the hyper inverse Wishart but has many more shape parameters, thus allowing for flexibility in differentially shrinking various parts of the covariance matrix. Moreover, using this family avoids recourse to MCMC, often infeasible in high-dimensional problems. We illustrate the performance of our estimators through a collection of numerical examples where we explore frequentist risk properties and the efficacy of graphs in the estimation of high-dimensional covariance structures.

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