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Carlos M. Marques

Publications and source records attributed to Carlos M. Marques.

15 recordsLinked to original sources

Ripple-like instability in the simulated gel phase of finite size phosphocholine bilayers

Atomistic molecular dynamics simulations have reached a degree of maturity that makes it possible to investigate the lipid polymorphism of model bilayers over a wide range of temperatures. However if both the fluid $L_α$ and tilted gel $L_{β'}$ states are routinely obtained, the $P_{β'}$ ripple phase of phosphatidylcholine lipid bilayers is still unsatifactorily described. Performing simulations of lipid bilayers made of different numbers of DPPC (1,2-dipalmitoylphosphatidylcholine) molecules ranging from 32 to 512, we demonstrate that the tilted gel phase $L_{β'}$ expected below the pre-transition cannot be obtained for large systems ($>$ 94 DPPC molecules) through common simulations settings or temperature treatments. Large systems are instead found in a disordered gel phase which display configurations, topography and energies reminiscent from the ripple phase $P_{β'}$ observed between the pretransition and the main melting transition. We show how the state of the bilayers below the pretransition can be controlled and depends on thermal history and conditions of preparations. A mechanism for the observed topographic instability is suggested.

cond-mat.soft

Tear of Lipid Membranes by Nanoparticles

Health concerns associated with the advent of nanotechnologies have risen sharply when it was found that particles of nanoscopic dimensions reach the cell lumina. Plasma and organelle lipid membranes, which are exposed to both the incoming and the engulfed nanoparticles, are the primary targets of possible disruptions. However, reported adhesion, invagination and embedment of nanoparticles (NPs) do not compromise the membrane integrity, precluding direct bilayer damage as a mechanism for toxicity. Here it is shown that a lipid membrane can be torn by small enough nanoparticles, thus unveiling mechanisms for how lipid membrane can be compromised by tearing from nanoparticles. Surprisingly, visualization by cryo transmission electron microscopy (cryo-TEM) of liposomes exposed to nanoparticles revealed also that liposomal laceration is prevented by particle abundance. Membrane destruction results thus from a subtle particle-membrane interplay that is here elucidated. This brings into a firmer molecular basis the theorized mechanisms of nanoparticle effects on lipid bilayers and paves the way for a better assessment of nanoparticle toxicity.

cond-mat.soft

A machine learning assessment of the two states model for lipid bilayer phase transitions

We have adapted a set of classification algorithms, also known as Machine Learning, to the identification of fluid and gel domains close to the main transition of dipalmitoyl-phosphatidylcholine (DPPC) bilayers. Using atomistic molecular dynamics conformations in the low and high temperature phases as learning sets, the algorithm was trained to categorize individual lipid configurations as fluid or gel, in relation with the usual two-states phenomenological description of the lipid melting transition. We demonstrate that our machine can learn and sort lipids according to their most likely state without prior assumption regarding the nature of the order parameter of the transition. Results from our machine learning approach provides strong support in favor of a two-states model approach of membrane fluidity.

cond-mat.soft

A fluid bilayer phase in aqueous mixtures of fatty alcohol and cationic surfactant

The $L_α$ phase of lipid bilayers is a fluid self-assembled state, key to the formulation of cosmetics, detergents and pharmaceutics. Despite having been extensively scrutinized in self-assembled phospholipid or surfactant bilayers, the formation of a fluid $L_α$ state has defied understanding in mixtures of fatty alcohols, surfactants and water, where is viewed as the essential step for the preparation of creamy dispersions. Here, atomistic molecular dynamics simulations show the existence of a fluid bilayer in aqueous mixtures of cetyl (C$_{16}$OH) and stearyl (C$_{18}$OH) alcohols, and cetyl-trimethylammonium chloride (CTAC). These simulated bilayer systems display not only a rich temperature phase diagram with many of the features seen in experiments but carry also the unambigous signature of fluid bilayer behavior.

cond-mat.soft

The role of shape disorder in the collective behaviour of aligned fibrous matter

We study the compression of bundles of aligned macroscopic fibers with intrinsic shape disorder, as found in human hair and in many other natural and man-made systems. We show by a combination of experiments, numerical simulations and theory how the statistical properties of the shapes of the fibers control the collective mechanical behaviour of the bundles. This work paves the way for designing aligned fibrous matter with pre-required properties from large numbers of individual strands of selected geometry and rigidity.

cond-mat.soft

Depleted Depletion Drives Polymer Swelling in Poor Solvent Mixtures

Macromolecular solubility in solvent mixtures often exhibit striking and paradoxical nature. For example, when two well miscible poor solvents for a given polymer are mixed together, the same polymer may swell within intermediate mixing ratios. We combine computer simulations and theoretical arguments to unveil the first microscopic, generic origin of this collapse-swelling-collapse scenario. We show that this phenomenon naturally emerges at constant pressure in mixtures of purely repulsive components, especially when a delicate balance of the entropically driven depletion interactions is achieved.

cond-mat.soft

Co-non-solvency: Mean-field polymer theory does not describe polymer collapse transition in a mixture of two competing good solvents

Smart polymers are a modern class of polymeric materials that often exhibit unpredictable behavior in mixtures of solvents. One such phenomenon is co-non-solvency. Co-non-solvency occurs when two (perfectly) miscible and competing good solvents, for a given polymer, are mixed together. As a result, the same polymer collapses into a compact globule within intermediate mixing ratios. More interestingly, polymer collapses when the solvent quality remains good and even gets increasingly better by the addition of the better cosolvent. This is a puzzling phenomenon that is driven by strong local concentration fluctuations. Because of the discrete particle based nature of the interactions, Flory-Huggins type mean field arguments become unsuitable. In this work, we extend the analysis of the co-non-solvency effect presented earlier [Nature Communications 5, 4882 (2014)]. We explain why co-non-solvency is a generic phenomenon that can be understood by the thermodynamic treatment of the competitive displacement of (co)solvent components. This competition can result in a polymer collapse upon improvement of the solvent quality. Specific chemical details are not required to understand these complex conformational transitions. Therefore, a broad range of polymers are expected to exhibit similar reentrant coil-globule-coil transitions in competing good solvents.

cond-mat.soft

Pressure exerted by a grafted polymer on the limiting line of a semi-infinite square lattice

Using exact enumerations of self-avoiding walks (SAWs) we compute the inhomogeneous pressure exerted by a two-dimensional end-grafted polymer on the grafting line which limits a semi-infinite square lattice. The results for SAWs show that the asymptotic decay of the pressure as a function of the distance to the grafting point follows a power-law with an exponent similar to that of gaussian chains and is, in this sense, independent of excluded volume effects.

cond-mat.stat-mech

Thermodynamic Approach to Phase Coexistence in Ternary Phospholipi-Cholesterol Mixtures

We introduce a simple and predictive model for determining the phase stability of ternary phospholipid-cholesterol mixtures. Assuming that competition between the liquid and gel order of the phospholipids is the main driving force behind lipid segregation, we derive a Gibbs free-energy of mixing, based on the thermodynamic properties of the lipids main transition. A numerical approach was devised that enable the fast and efficient determination of the ternary diagrams associated with our Gibbs free-energy. The computed phase coexistence diagram of DOPC/DPPC/cholesterol reproduces well known features for this system at 10\circ C, as well as its evolution with temperature.

cond-mat.soft

Collision induced spatial organization of microtubules

The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls or other structures. We examine here a microtubule growth model where the increase in size of the plus-end is perturbed by collisions with other microtubules. We show that such a simple mechanism of constrained growth can induce ordered structures and patterns from an initially isotropic and homogeneous suspension. First, microtubules self-organize locally in randomly oriented domains that grow and compete with each other. By imposing even a weak orientation bias, external forces like gravity or cellular boundaries may bias the domain distribution eventually leading to a macroscopic sample orientation.

cond-mat.soft

Micellization of Sliding Polymer Surfactants

Following up a recent paper on grafted sliding polymer layers (Macromolecules 2005, 38, 1434-1441), we investigated the influence of the sliding degree of freedom on the self-assembly of sliding polymeric surfactants that can be obtained by complexation of polymers with cyclodextrins. In contrast to the micelles of quenched block copolymer surfactants, the free energy of micelles of sliding surfactants can have two minima: the first corresponding to small micelles with symmetric arm lengths, and the second corresponding to large micelles with asymmetric arm lengths. The relative sizes and concentrations of small and large micelles in the solution depend on the molecular parameters of the system. The appearance of small micelles drastically reduces the kinetic barrier signifying the fast formation of equilibrium micelles.

cond-mat.soft

Sliding grafted polymer layers

We study theoretically the structure of sliding grafted polymer layers or SGP layers. These interfacial structures are built by attaching each polymer to the substrate with a ring-like molecule such as cyclodextrins. Such a topological grafting mode allows the chains to freely slide along the attachment point. Escape from the sliding link is prevented by bulky capping groups. We show that grafts in the mushroom regime adopt mainly symmetric configurations (with comparable branch sizes) while grafts in dense layers are highly dissymmetric so that only one branch per graft participates in the layer. Sliding layers on small colloids or star-like sliding micelles exhibit an intermediate behavior where the number of longer branches participating in the corona is independent of the total number of branches. This regime also exists for sliding surface-micelles comprising less chains but it is narrower.

cond-mat.soft

Fluctuating diffusion-limited aggregates

We study the structure and growth of a difusion-limited aggregate (DLA) for which the constitutive units remain mobile during the aggregation process. Contrary to DLA where far from equilibrium conditions are the prevalent factor for growth, the structure of the aggregate is here determined by a combination of annealed and quenched processes. The internal flexibility allows the aggregate to span the equilibrium configurational space, and such thermally driven motion further modifies the connectivity statistics of the growing branched structure.

cond-mat.stat-mech

Scattering from supramacromolecular structures

We study theoretically the scattering imprint of a number of branched supramacromolecular architectures, namely, polydisperse stars and dendrimeric, hyperbranched structures. We show that polydispersity and nature of branching highly influence the intermediate wavevector region of the scattering structure factor, thus providing insight into the morphology of different aggregates formed in polymer solutions.

cond-mat.soft

Scale-dependent rigidity of polymer-ornamented membranes

We study the fluctuation spectrum of fluid membranes carrying grafted polymers. Contrary to usual descriptions, we find that the modifications induced by the polymers cannot be reduced to the renormalization of the membrane bending rigidity. Instead we show that the ornamented membrane exhibits a scale-dependent elastic modulus that we evaluate. In ornamented lamellar stacks, we further show that this leads to a modification of the Caille parameter characterizing the power-law singularities of the Bragg peaks.

cond-mat.soft