arXiv subjects

Carola-Bibiane Schönlieb

Publications and source records attributed to Carola-Bibiane Schönlieb.

At least 91 records · Page 5Linked to original sources

arXiv2025

A study of why we need to reassess full reference image quality assessment with medical images

Image quality assessment (IQA) is indispensable in clinical practice to ensure high standards, as well as in the development stage of machine learning algorithms that operate on medical images. The popular full reference (FR) IQA measures PSNR and SSIM are known and tested for working successfully in many natural imaging tasks, but discrepancies in medical scenarios have been reported in the literature, highlighting the gap between development and actual clinical application. Such inconsistencies are not surprising, as medical images have very different properties than natural images, and PSNR and SSIM have neither been targeted nor properly tested for medical images. This may cause unforeseen problems in clinical applications due to wrong judgment of novel methods. This paper provides a structured and comprehensive overview of examples where PSNR and SSIM prove to be unsuitable for the assessment of novel algorithms using different kinds of medical images, including real-world MRI, CT, OCT, X-Ray, digital pathology and photoacoustic imaging data. Therefore, improvement is urgently needed in particular in this era of AI to increase reliability and explainability in machine learning for medical imaging and beyond. Lastly, we will provide ideas for future research as well as suggesting guidelines for the usage of FR-IQA measures applied to medical images.

eess.IV↗

arXiv2025

Learning Regularization for Graph Inverse Problems

In recent years, Graph Neural Networks (GNNs) have been utilized for various applications ranging from drug discovery to network design and social networks. In many applications, it is impossible to observe some properties of the graph directly; instead, noisy and indirect measurements of these properties are available. These scenarios are coined as Graph Inverse Problems (GRIP). In this work, we introduce a framework leveraging GNNs to solve GRIPs. The framework is based on a combination of likelihood and prior terms, which are used to find a solution that fits the data while adhering to learned prior information. Specifically, we propose to combine recent deep learning techniques that were developed for inverse problems, together with GNN architectures, to formulate and solve GRIP. We study our approach on a number of representative problems that demonstrate the effectiveness of the framework.

cs.LG↗

arXiv2025

Enhanced Denoising and Convergent Regularisation Using Tweedie Scaling

The inherent ill-posed nature of image reconstruction problems, due to limitations in the physical acquisition process, is typically addressed by introducing a regularisation term that incorporates prior knowledge about the underlying image. The iterative framework of Plug-and-Play methods, specifically designed for tackling such inverse problems, achieves state-of-the-art performance by replacing the regularisation with a generic denoiser, which may be parametrised by a neural network architecture. However, these deep learning approaches suffer from a critical limitation: the absence of a control parameter to modulate the regularisation strength, which complicates the design of a convergent regularisation. To address this issue, this work introduces a novel scaling method that explicitly integrates and adjusts the strength of regularisation. The scaling parameter enhances interpretability by reflecting the quality of the denoiser's learning process, and also systematically improves its optimisation. Furthermore, the proposed approach ensures that the resulting family of regularisations is provably stable and convergent.

eess.IV↗

arXiv2025

Lie Algebra Canonicalization: Equivariant Neural Operators under arbitrary Lie Groups

The quest for robust and generalizable machine learning models has driven recent interest in exploiting symmetries through equivariant neural networks. In the context of PDE solvers, recent works have shown that Lie point symmetries can be a useful inductive bias for Physics-Informed Neural Networks (PINNs) through data and loss augmentation. Despite this, directly enforcing equivariance within the model architecture for these problems remains elusive. This is because many PDEs admit non-compact symmetry groups, oftentimes not studied beyond their infinitesimal generators, making them incompatible with most existing equivariant architectures. In this work, we propose Lie aLgebrA Canonicalization (LieLAC), a novel approach that exploits only the action of infinitesimal generators of the symmetry group, circumventing the need for knowledge of the full group structure. To achieve this, we address existing theoretical issues in the canonicalization literature, establishing connections with frame averaging in the case of continuous non-compact groups. Operating within the framework of canonicalization, LieLAC can easily be integrated with unconstrained pre-trained models, transforming inputs to a canonical form before feeding them into the existing model, effectively aligning the input for model inference according to allowed symmetries. LieLAC utilizes standard Lie group descent schemes, achieving equivariance in pre-trained models. Finally, we showcase LieLAC's efficacy on tasks of invariant image classification and Lie point symmetry equivariant neural PDE solvers using pre-trained models.

cs.LG↗

arXiv2025

Towards Graph Foundation Models: A Study on the Generalization of Positional and Structural Encodings

Recent advances in integrating positional and structural encodings (PSEs) into graph neural networks (GNNs) have significantly enhanced their performance across various graph learning tasks. However, the general applicability of these encodings and their potential to serve as foundational representations for graphs remain uncertain. This paper investigates the fine-tuning efficiency, scalability with sample size, and generalization capability of learnable PSEs across diverse graph datasets. Specifically, we evaluate their potential as universal pre-trained models that can be easily adapted to new tasks with minimal fine-tuning and limited data. Furthermore, we assess the expressivity of the learned representations, particularly, when used to augment downstream GNNs. We demonstrate through extensive benchmarking and empirical analysis that PSEs generally enhance downstream models. However, some datasets may require specific PSE-augmentations to achieve optimal performance. Nevertheless, our findings highlight their significant potential to become integral components of future graph foundation models. We provide new insights into the strengths and limitations of PSEs, contributing to the broader discourse on foundation models in graph learning.

cs.LG↗

arXiv2025

On Oversquashing in Graph Neural Networks Through the Lens of Dynamical Systems

A common problem in Message-Passing Neural Networks is oversquashing -- the limited ability to facilitate effective information flow between distant nodes. Oversquashing is attributed to the exponential decay in information transmission as node distances increase. This paper introduces a novel perspective to address oversquashing, leveraging dynamical systems properties of global and local non-dissipativity, that enable the maintenance of a constant information flow rate. We present SWAN, a uniquely parameterized GNN model with antisymmetry both in space and weight domains, as a means to obtain non-dissipativity. Our theoretical analysis asserts that by implementing these properties, SWAN offers an enhanced ability to transmit information over extended distances. Empirical evaluations on synthetic and real-world benchmarks that emphasize long-range interactions validate the theoretical understanding of SWAN, and its ability to mitigate oversquashing.

cs.LG↗

arXiv2025

Where Do We Stand with Implicit Neural Representations? A Technical and Performance Survey

Implicit Neural Representations (INRs) have emerged as a paradigm in knowledge representation, offering exceptional flexibility and performance across a diverse range of applications. INRs leverage multilayer perceptrons (MLPs) to model data as continuous implicit functions, providing critical advantages such as resolution independence, memory efficiency, and generalisation beyond discretised data structures. Their ability to solve complex inverse problems makes them particularly effective for tasks including audio reconstruction, image representation, 3D object reconstruction, and high-dimensional data synthesis. This survey provides a comprehensive review of state-of-the-art INR methods, introducing a clear taxonomy that categorises them into four key areas: activation functions, position encoding, combined strategies, and network structure optimisation. We rigorously analyse their critical properties, such as full differentiability, smoothness, compactness, and adaptability to varying resolutions while also examining their strengths and limitations in addressing locality biases and capturing fine details. Our experimental comparison offers new insights into the trade-offs between different approaches, showcasing the capabilities and challenges of the latest INR techniques across various tasks. In addition to identifying areas where current methods excel, we highlight key limitations and potential avenues for improvement, such as developing more expressive activation functions, enhancing positional encoding mechanisms, and improving scalability for complex, high-dimensional data. This survey serves as a roadmap for researchers, offering practical guidance for future exploration in the field of INRs. We aim to foster new methodologies by outlining promising research directions for INRs and applications.

cs.CV↗

arXiv2025

On the Effectiveness of Random Weights in Graph Neural Networks

Graph Neural Networks (GNNs) have achieved remarkable success across diverse tasks on graph-structured data, primarily through the use of learned weights in message passing layers. In this paper, we demonstrate that random weights can be surprisingly effective, achieving performance comparable to end-to-end training counterparts, across various tasks and datasets. Specifically, we show that by replacing learnable weights with random weights, GNNs can retain strong predictive power, while significantly reducing training time by up to 6$\times$ and memory usage by up to 3$\times$. Moreover, the random weights combined with our construction yield random graph propagation operators, which we show to reduce the problem of feature rank collapse in GNNs. These understandings and empirical results highlight random weights as a lightweight and efficient alternative, offering a compelling perspective on the design and training of GNN architectures.

cs.LG↗

arXiv2025

Inverse Evolution Data Augmentation for Neural PDE Solvers

Neural networks have emerged as promising tools for solving partial differential equations (PDEs), particularly through the application of neural operators. Training neural operators typically requires a large amount of training data to ensure accuracy and generalization. In this paper, we propose a novel data augmentation method specifically designed for training neural operators on evolution equations. Our approach utilizes insights from inverse processes of these equations to efficiently generate data from random initialization that are combined with original data. To further enhance the accuracy of the augmented data, we introduce high-order inverse evolution schemes. These schemes consist of only a few explicit computation steps, yet the resulting data pairs can be proven to satisfy the corresponding implicit numerical schemes. In contrast to traditional PDE solvers that require small time steps or implicit schemes to guarantee accuracy, our data augmentation method employs explicit schemes with relatively large time steps, thereby significantly reducing computational costs. Accuracy and efficacy experiments confirm the effectiveness of our approach. Additionally, we validate our approach through experiments with the Fourier Neural Operator and UNet on three common evolution equations that are Burgers' equation, the Allen-Cahn equation and the Navier-Stokes equation. The results demonstrate a significant improvement in the performance and robustness of the Fourier Neural Operator when coupled with our inverse evolution data augmentation method.

cs.LG↗

arXiv2025

Review and Recommendations for using Artificial Intelligence in Intracoronary Optical Coherence Tomography Analysis

Artificial intelligence (AI) methodologies hold great promise for the rapid and accurate diagnosis of coronary artery disease (CAD) from intravascular optical coherent tomography (IVOCT) images. Numerous papers have been published describing AI-based models for different diagnostic tasks, yet it remains unclear which models have potential clinical utility and have been properly validated. This systematic review considered published literature between January 2015 and February 2023 describing AI-based diagnosis of CAD using IVOCT. Our search identified 5,576 studies, with 513 included after initial screening and 35 studies included in the final systematic review after quality screening. Our findings indicate that most of the identified models are not currently suitable for clinical use, primarily due to methodological flaws and underlying biases. To address these issues, we provide recommendations to improve model quality and research practices to enhance the development of clinically useful AI products.

eess.IV↗

arXiv2025

GRAMA: Adaptive Graph Autoregressive Moving Average Models

Graph State Space Models (SSMs) have recently been introduced to enhance Graph Neural Networks (GNNs) in modeling long-range interactions. Despite their success, existing methods either compromise on permutation equivariance or limit their focus to pairwise interactions rather than sequences. Building on the connection between Autoregressive Moving Average (ARMA) and SSM, in this paper, we introduce GRAMA, a Graph Adaptive method based on a learnable Autoregressive Moving Average (ARMA) framework that addresses these limitations. By transforming from static to sequential graph data, GRAMA leverages the strengths of the ARMA framework, while preserving permutation equivariance. Moreover, GRAMA incorporates a selective attention mechanism for dynamic learning of ARMA coefficients, enabling efficient and flexible long-range information propagation. We also establish theoretical connections between GRAMA and Selective SSMs, providing insights into its ability to capture long-range dependencies. Extensive experiments on 14 synthetic and real-world datasets demonstrate that GRAMA consistently outperforms backbone models and performs competitively with state-of-the-art methods.

cs.LG↗

arXiv2025

Unsupervised Training of Convex Regularizers using Maximum Likelihood Estimation

Imaging is a standard example of an inverse problem, where the task of reconstructing a ground truth from a noisy measurement is ill-posed. Recent state-of-the-art approaches for imaging use deep learning, spearheaded by unrolled and end-to-end models and trained on various image datasets. However, many such methods require the availability of ground truth data, which may be unavailable or expensive, leading to a fundamental barrier that can not be bypassed by choice of architecture. Unsupervised learning presents an alternative paradigm that bypasses this requirement, as they can be learned directly on noisy data and do not require any ground truths. A principled Bayesian approach to unsupervised learning is to maximize the marginal likelihood with respect to the given noisy measurements, which is intrinsically linked to classical variational regularization. We propose an unsupervised approach using maximum marginal likelihood estimation to train a convex neural network-based image regularization term directly on noisy measurements, improving upon previous work in both model expressiveness and dataset size. Experiments demonstrate that the proposed method produces priors that are near competitive when compared to the analogous supervised training method for various image corruption operators, maintaining significantly better generalization properties when compared to end-to-end methods. Moreover, we provide a detailed theoretical analysis of the convergence properties of our proposed algorithm.

stat.ME↗

arXiv2024

Towards Foundation Models on Graphs: An Analysis on Cross-Dataset Transfer of Pretrained GNNs

To develop a preliminary understanding towards Graph Foundation Models, we study the extent to which pretrained Graph Neural Networks can be applied across datasets, an effort requiring to be agnostic to dataset-specific features and their encodings. We build upon a purely structural pretraining approach and propose an extension to capture feature information while still being feature-agnostic. We evaluate pretrained models on downstream tasks for varying amounts of training samples and choices of pretraining datasets. Our preliminary results indicate that embeddings from pretrained models improve generalization only with enough downstream data points and in a degree which depends on the quantity and properties of pretraining data. Feature information can lead to improvements, but currently requires some similarities between pretraining and downstream feature spaces.

cs.LG↗

arXiv2024

Cross-Modal Few-Shot Learning with Second-Order Neural Ordinary Differential Equations

We introduce SONO, a novel method leveraging Second-Order Neural Ordinary Differential Equations (Second-Order NODEs) to enhance cross-modal few-shot learning. By employing a simple yet effective architecture consisting of a Second-Order NODEs model paired with a cross-modal classifier, SONO addresses the significant challenge of overfitting, which is common in few-shot scenarios due to limited training examples. Our second-order approach can approximate a broader class of functions, enhancing the model's expressive power and feature generalization capabilities. We initialize our cross-modal classifier with text embeddings derived from class-relevant prompts, streamlining training efficiency by avoiding the need for frequent text encoder processing. Additionally, we utilize text-based image augmentation, exploiting CLIP's robust image-text correlation to enrich training data significantly. Extensive experiments across multiple datasets demonstrate that SONO outperforms existing state-of-the-art methods in few-shot learning performance.

cs.CV↗

arXiv2024

A study on the adequacy of common IQA measures for medical images

Image quality assessment (IQA) is standard practice in the development stage of novel machine learning algorithms that operate on images. The most commonly used IQA measures have been developed and tested for natural images, but not in the medical setting. Reported inconsistencies arising in medical images are not surprising, as they have different properties than natural images. In this study, we test the applicability of common IQA measures for medical image data by comparing their assessment to manually rated chest X-ray (5 experts) and photoacoustic image data (2 experts). Moreover, we include supplementary studies on grayscale natural images and accelerated brain MRI data. The results of all experiments show a similar outcome in line with previous findings for medical images: PSNR and SSIM in the default setting are in the lower range of the result list and HaarPSI outperforms the other tested measures in the overall performance. Also among the top performers in our experiments are the full reference measures FSIM, LPIPS and MS-SSIM. Generally, the results on natural images yield considerably higher correlations, suggesting that additional employment of tailored IQA measures for medical imaging algorithms is needed.

eess.IV↗

arXiv2024

A sparse optimization approach to infinite infimal convolution regularization

In this paper we introduce the class of infinite infimal convolution functionals and apply these functionals to the regularization of ill-posed inverse problems. The proposed regularization involves an infimal convolution of a continuously parametrized family of convex, positively one-homogeneous functionals defined on a common Banach space $X$. We show that, under mild assumptions, this functional admits an equivalent convex lifting in the space of measures with values in $X$. This reformulation allows us to prove well-posedness of a Tikhonov regularized inverse problem and opens the door to a sparse analysis of the solutions. In the case of finite-dimensional measurements we prove a representer theorem, showing that there exists a solution of the inverse problem that is sparse, in the sense that it can be represented as a linear combination of the extremal points of the ball of the lifted infinite infimal convolution functional. Then, we design a generalized conditional gradient method for computing solutions of the inverse problem without relying on an a priori discretization of the parameter space and of the Banach space $X$. The iterates are constructed as linear combinations of the extremal points of the lifted infinite infimal convolution functional. We prove a sublinear rate of convergence for our algorithm and apply it to denoising of signals and images using, as regularizer, infinite infimal convolutions of fractional-Laplacian-type operators with adaptive orders of smoothness and anisotropies.

math.OC↗

arXiv2024

TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets

Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.

physics.med-ph↗

arXiv2024

Benchmarking learned algorithms for computed tomography image reconstruction tasks

Computed tomography (CT) is a widely used non-invasive diagnostic method in various fields, and recent advances in deep learning have led to significant progress in CT image reconstruction. However, the lack of large-scale, open-access datasets has hindered the comparison of different types of learned methods. To address this gap, we use the 2DeteCT dataset, a real-world experimental computed tomography dataset, for benchmarking machine learning based CT image reconstruction algorithms. We categorize these methods into post-processing networks, learned/unrolled iterative methods, learned regularizer methods, and plug-and-play methods, and provide a pipeline for easy implementation and evaluation. Using key performance metrics, including SSIM and PSNR, our benchmarking results showcase the effectiveness of various algorithms on tasks such as full data reconstruction, limited-angle reconstruction, sparse-angle reconstruction, low-dose reconstruction, and beam-hardening corrected reconstruction. With this benchmarking study, we provide an evaluation of a range of algorithms representative for different categories of learned reconstruction methods on a recently published dataset of real-world experimental CT measurements. The reproducible setup of methods and CT image reconstruction tasks in an open-source toolbox enables straightforward addition and comparison of new methods later on. The toolbox also provides the option to load the 2DeteCT dataset differently for extensions to other problems and different CT reconstruction tasks.

eess.IV↗