SearcharxivSearch

arXiv subjects

Carson Chow

Publications and source records attributed to Carson Chow.

5 recordsLinked to original sources

Perturbative adaptive importance sampling for Bayesian LOO cross-validation

Importance sampling (IS) is an efficient stand-in for model refitting in performing (LOO) cross-validation (CV) on a Bayesian model. IS inverts the Bayesian update for a single observation by reweighting posterior samples. The so-called importance weights have high variance -- we resolve this issue through adaptation by transformation. We observe that removing a single observation perturbs the posterior by $\mathcal{O}(1/n)$, motivating bijective transformations of the form $T(\theta)=\theta + h Q(\theta)$ for $0<h\ll 1.$ We introduce several such transformations: partial moment matching, which generalizes prior work on affine moment-matching with a tunable step size; log-likelihood descent, which partially invert the Bayesian update for an observation; and gradient flow steps that minimize the KL divergence or IS variance. The gradient flow and likelihood descent transformations require Jacobian determinants, which are available via auto-differentiation; we additionally derive closed-form expressions for logistic regression and shallow ReLU networks. We tested the methodology on classification ($n\ll p$), count regression (Poisson and zero-inflated negative binomial), and survival analysis problems, finding that no single transformation dominates but their combination nearly eliminates the need to refit.

stat.ME

Finite size effects for spiking neural networks with spatially dependent coupling

We study finite-size fluctuations in a network of spiking deterministic neurons coupled with non-uniform synaptic coupling. We generalize a previously developed theory of finite size effects for uniform globally coupled neurons. In the uniform case, mean field theory is well defined by averaging over the network as the number of neurons in the network goes to infinity. However, for nonuniform coupling it is no longer possible to average over the entire network if we are interested in fluctuations at a particular location within the network. We show that if the coupling function approaches a continuous function in the infinite system size limit then an average over a local neighborhood can be defined such that mean field theory is well defined for a spatially dependent field. We then derive a perturbation expansion in the inverse system size around the mean field limit for the covariance of the input to a neuron (synaptic drive) and firing rate fluctuations due to dynamical deterministic finite-size effects.

q-bio.NC

Learning recurrent dynamics in spiking networks

Spiking activity of neurons engaged in learning and performing a task show complex spatiotemporal dynamics. While the output of recurrent network models can learn to perform various tasks, the possible range of recurrent dynamics that emerge after learning remains unknown. Here we show that modifying the recurrent connectivity with a recursive least squares algorithm provides sufficient flexibility for synaptic and spiking rate dynamics of spiking networks to produce a wide range of spatiotemporal activity. We apply the training method to learn arbitrary firing patterns, stabilize irregular spiking activity of a balanced network, and reproduce the heterogeneous spiking rate patterns of cortical neurons engaged in motor planning and movement. We identify sufficient conditions for successful learning, characterize two types of learning errors, and assess the network capacity. Our findings show that synaptically-coupled recurrent spiking networks possess a vast computational capability that can support the diverse activity patterns in the brain.

q-bio.NC

Field theory for biophysical neural networks

The human brain is a complex system composed of a network of hundreds of billions of discrete neurons that are coupled through time dependent synapses. Simulating the entire brain is a daunting challenge. Here, we show how ideas from quantum field theory can be used to construct an effective reduced theory, which may be analyzed with lattice computations. We give some examples of how the formalism can be applied to biophysically plausible neural network models.

q-bio.NC

Dynamics of Acute Inflammation

When the body is infected, it mounts an acute inflammatory response to rid itself of the pathogens and restore health. Uncontrolled acute inflammation due to infection is defined clinically as Sepsis and can culminate in organ failure and death. We consider a three dimensional ordinary differential equation model of inflammation consisting of a pathogen, and two inflammatory mediators. The model reproduces the healthy outcome and diverse negative outcomes, depending on initial conditions and parameters.when key parameters are changed and suggest various therapeutic strategies. We suggest that the clinical condition of sepsis can arise from several distinct physiological states, each of which requires a different treatment approach. We analyze the various bifurcations between the different outcomes

q-bio.TO