Searcharxiv⌕ Search

arXiv subjects

Cassandra Tong Ye

Publications and source records attributed to Cassandra Tong Ye.

2 recordsLinked to original sources

QUTCC: Quantile Uncertainty Training and Conformal Calibration for Imaging Inverse Problems

While deep learning offers tremendous promise for scientific and medical imaging, any failures and hallucinations (predictions that do not coincide with reality) are hard to pinpoint and can have serious downstream consequences. Uncertainty estimation techniques, such as conformal prediction, can help by predicting statistically valid error bars for a model's prediction. However, popular conformal prediction methods were not designed for high-dimensional image-valued problems and do not take into account spatial correlations within an image during conformal calibration, resulting in larger-than-necessary uncertainty intervals. We propose a practical simultaneous quantile regression method that enables non-linear, spatially-adaptive scaling during conformal calibration. Our method, QUTCC uses a U-Net architecture with a quantile embedding to learn a full conditional quantile distribution during training, and then leverages this non-linear, learned function for spatially-adaptive conformal calibration. At test time, our method can efficiently estimate uncertainty intervals with pixel-marginal coverage guarantees. In addition, QUTCC can also predict pixel-wise conditional probability density estimates without any built-in distributional assumptions. We evaluate our method on several denoising problems, accelerated magnetic resonance imaging, and quantitative phase microscopy. Our method consistently produces tighter uncertainty intervals than prior conformal methods at the same coverage level, can predict plausible conditional distributions for different tasks, and in some cases, high-uncertainty regions can help us locate hallucinations in a model's prediction.

eess.IV↗

Learned, uncertainty-driven adaptive acquisition for photon-efficient scanning microscopy

Scanning microscopy systems, such as confocal and multiphoton microscopy, are powerful imaging tools for probing deep into biological tissue. However, scanning systems have an inherent trade-off between acquisition time, field of view, phototoxicity, and image quality, often resulting in noisy measurements when fast, large field of view, and/or gentle imaging is needed. Deep learning could be used to denoise noisy microscopy measurements, but these algorithms can be prone to hallucination, which can be disastrous for medical and scientific applications. We propose a method to simultaneously denoise and predict pixel-wise uncertainty for scanning microscopy systems, improving algorithm trustworthiness and providing statistical guarantees for deep learning predictions. Furthermore, we propose to leverage this learned, pixel-wise uncertainty to drive an adaptive acquisition technique that rescans only the most uncertain regions of a sample, saving time and reducing the total light dose to the sample. We demonstrate our method on experimental confocal and multiphoton microscopy systems, showing that our uncertainty maps can pinpoint hallucinations in the deep learned predictions. Finally, with our adaptive acquisition technique, we demonstrate up to 16X reduction in acquisition time and total light dose while successfully recovering fine features in the sample and reducing hallucinations. We are the first to demonstrate distribution-free uncertainty quantification for a denoising task with real experimental data and the first to propose adaptive acquisition based on reconstruction uncertainty.

eess.IV↗