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Catarina Redshaw Kranich

Publications and source records attributed to Catarina Redshaw Kranich.

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Physics-informed denoising method for image reconstruction in quantitative low-field MRI

Low-field magnetic resonance imaging (MRI) is becoming increasingly important for medical imaging because it can reduce healthcare costs while ensuring high diagnostic output. Nevertheless, quantitative imaging in low-field MRI faces challenges, such as low signal-to-noise ratio and long scan durations. Deep learning approaches have been proposed for image reconstruction to overcome these challenges. Still, deep learning often requires large high-quality training datasets which are usually not available for low-field applications. Here we propose a modular unrolled end-to-end deep learning method for the denoised reconstruction of quantitative parameter maps directly from k-space data for low-field MRI. It consists of three sub-networks that are iteratively applied. They are used for the regularization of the quantitative parameter estimation, as well as for the signal estimation that is based on simulated signal curves. It generalises well and can be applied to different field strengths and even different quantitative MR sequences without the need for new training data. We applied the presented method to noisy data of knees acquired at 0.55 T for the reconstruction of $T_2$-maps and compared it to other classical and deep learning methods. We also applied the proposed approach to $T_1$-mapping of knees at 72 mT and $T_2$-mapping of brains at 0.6 T. The presented approach outperforms the other reconstruction methods with a median difference below 4 ms to the ground truth $T_2$-map. Even though the network was trained with $T_2$-maps acquired at 0.55 T, it successfully denoised data acquired at different field strengths, sequences, and of different anatomies. As a result, the proposed network and its underlying method offer an efficient and flexible solution to denoise low-field MR data and make quantitative low-field MRI a feasible diagnostic tool for clinical applications.

eess.IV

MRpro: open framework for model-based, learned, and quantitative MR imaging

We preseent an open-source image reconstruction package built upon PyTorch, enabling modern deep-learning reconstructions. It uses open data formats for input and output (ISMRMRD, DICOM, NIfTI), allowing easy integration into existing pipelines and support for data from different devices. The framework comprises three main areas. First, it provides unified data structures for the consistent manipulation of MR datasets and their associated metadata (e.g., k-space trajectories). Second, it offers a library of composable operators, proximable functionals, and optimization algorithms, including a unified Fourier operator for all common trajectories and operators specifically developed for low-field applications, such as a B0-correction operator. These components are used to create ready-to-use implementations of key reconstruction algorithms. Third, for deep learning, MRpro includes essential building blocks such as data-consistency layers, differentiable optimization layers, state-of-the-art backbone networks, and access to public datasets to facilitate reproducibility. We demonstrate MRpro across automatic reconstruction, iterative SENSE, deep-learning-based reconstruction, and quantitative parameter estimation. Applications use public and simulated datasets and measured lowfield data acquired at 0.3 T, 0.6 T, and 47 mT.

eess.IV