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Catherine Deng

Publications and source records attributed to Catherine Deng.

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Scale-Consistent Learning for Partial Differential Equations

Machine learning (ML) models have emerged as a promising approach for solving partial differential equations (PDEs) in science and engineering. Previous ML models typically cannot generalize outside the training data; for example, a trained ML model for the Navier-Stokes equations only works for a fixed Reynolds number ($Re$) on a pre-defined domain. To overcome these limitations, we propose a data augmentation scheme based on scale-consistency properties of PDEs and design a scale-informed neural operator that can model a wide range of scales. Our formulation leverages the facts: (i) PDEs can be rescaled, or more concretely, a given domain can be re-scaled to unit size, and the parameters and the boundary conditions of the PDE can be appropriately adjusted to represent the original solution, and (ii) the solution operators on a given domain are consistent on the sub-domains. We leverage these facts to create a scale-consistency loss that encourages matching the solutions evaluated on a given domain and the solution obtained on its sub-domain from the rescaled PDE. Since neural operators can fit to multiple scales and resolutions, they are the natural choice for incorporating scale-consistency loss during training of neural PDE solvers. We experiment with scale-consistency loss and the scale-informed neural operator model on the Burgers' equation, Darcy Flow, Helmholtz equation, and Navier-Stokes equations. With scale-consistency, the model trained on $Re$ of 1000 can generalize to $Re$ ranging from 250 to 10000, and reduces the error by 34% on average of all datasets compared to baselines.

cs.LG

Single-shot volumetric fluorescence imaging with neural fields

Single-shot volumetric fluorescence (SVF) imaging offers a significant advantage over traditional imaging methods that require scanning across multiple axial planes as it can capture biological processes with high temporal resolution. The key challenges in SVF imaging include requiring sparsity constraints, eliminating depth ambiguity in the reconstruction, and maintaining high resolution across a large field of view. In this paper, we introduce the QuadraPol point spread function (PSF) combined with neural fields, a novel approach for SVF imaging. This method utilizes a custom polarizer at the back focal plane and a polarization camera to detect fluorescence, effectively encoding the 3D scene within a compact PSF without depth ambiguity. Additionally, we propose a reconstruction algorithm based on the neural fields technique that provides improved reconstruction quality compared to classical deconvolution methods. QuadraPol PSF, combined with neural fields, significantly reduces the acquisition time of a conventional fluorescence microscope by approximately 20 times and captures a 100 mm$^3$ cubic volume in one shot. We validate the effectiveness of both our hardware and algorithm through all-in-focus imaging of bacterial colonies on sand surfaces and visualization of plant root morphology. Our approach offers a powerful tool for advancing biological research and ecological studies.

physics.optics