arXiv subjects

Cedric Chauve

Publications and source records attributed to Cedric Chauve.

22 records · Page 2Linked to original sources

arXiv2009

Hardness Results for the Gapped Consecutive-Ones Property

Motivated by problems of comparative genomics and paleogenomics, in [Chauve et al., 2009], the authors introduced the Gapped Consecutive-Ones Property Problem (k,delta)-C1P: given a binary matrix M and two integers k and delta, can the columns of M be permuted such that each row contains at most k blocks of ones and no two consecutive blocks of ones are separated by a gap of more than delta zeros. The classical C1P problem, which is known to be polynomial is equivalent to the (1,0)-C1P problem. They showed that the (2,delta)-C1P Problem is NP-complete for all delta >= 2 and that the (3,1)-C1P problem is NP-complete. They also conjectured that the (k,delta)-C1P Problem is NP-complete for k >= 2, delta >= 1 and (k,delta) =/= (2,1). Here, we prove that this conjecture is true. The only remaining case is the (2,1)-C1P Problem, which could be polynomial-time solvable.

cs.CC↗

arXiv2009

A 3-approximation algorithm for computing a parsimonious first speciation in the gene duplication model

We consider the following problem: from a given set of gene families trees on a set of genomes, find a first speciation, that splits these genomes into two subsets, that minimizes the number of gene duplications that happened before this speciation. We call this problem the Minimum Duplication Bipartition Problem. Using a generalization of the Minimum Edge-Cut Problem, known as Submodular Function Minimization, we propose a polynomial time and space 3-approximation algorithm for the Minimum Duplication Bipartition Problem.

cs.DM↗

arXiv2009

Average-case analysis of perfect sorting by reversals

A sequence of reversals that takes a signed permutation to the identity is perfect if at no step a common interval is broken. Determining a parsimonious perfect sequence of reversals that sorts a signed permutation is NP-hard. Here we show that, despite this worst-case analysis, with probability one, sorting can be done in polynomial time. Further, we find asymptotic expressions for the average length and number of reversals in commuting permutations, an interesting sub-class of signed permutations.

math.CO↗

arXiv2005

Combinatorial operators for Kronecker powers of representations of $§_n$

We present combinatorial operators for the expansion of the Kronecker product of irreducible representations of the symmetric group. These combinatorial operators are defined in the ring of symmetric functions and act on the Schur functions basis. This leads to a combinatorial description of the Kronecker powers of the irreducible representations indexed with the partition (n-1,1) which specializes the concept of oscillating tableaux in Young's lattice previously defined by S. Sundaram. We call our specialization {\it Kronecker tableaux}. Their combinatorial analysis leads to enumerative results for the multiplicity of any irreducible representation in the Kronecker powers of the form ${\c^{(n-1,1)}}^{\otimes k}$.

math.RT↗