arXiv subjects

Cem Okulmus

Publications and source records attributed to Cem Okulmus.

12 recordsLinked to original sources

arXiv2026

sheval: An RDF data shapes evaluation tool and test-suite for recursive shapes

Two different languages have been developed to validate RDF data based on the concept of a shape: ShEx and SHACL. In each language it is possible to define a shape that refers to itself, which is called a recursive shape. While in the case of ShEx, the semantics of recursive shapes is well defined and is part of the specification, in the case of SHACL, the semantics of recursive shapes is left to the implementation of the different SHACL engines. Consequently, the different SHACL engines show different behaviours when confronted with recursive shapes. In this paper we present sheval: an evaluation framework consisting of a tool and a test suite that can be used to compare the behaviour of different shapes technologies when confronted with recursive definitions. The tool has been used to evaluate and understand the differences in the implementation of recursive shapes in ShEx and SHACL. It provides a framework for testing and comparing the behaviour of different shape engines, helping to identify inconsistencies and potential issues, and providing a basis for further research and development in the field of shape-based validation of RDF data.

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arXiv2026

Rewriting Ontology-Mediated Property Graph Queries into GQL

Ontology-based data access is intended for graph data, but practical support remains limited to SQL-like languages lacking the navigational and path-matching features fundamental to graph querying. Theoretical algorithms for navigational queries have long been available. Still, they have never been implemented, largely because practical graph query languages fell short of their theoretical counterparts and lacked the expressive power needed to support rewriting common ontology languages. The recent standardisation efforts around GQL and SQL/PGQ finally allow us to overcome this barrier and present a practical query rewriting technique for ontology-mediated navigational graph queries. Ontologies are written in a DL-Lite variant tuned to property graphs, and the queries in a GQL fragment with nested two-way regular path queries and which can be evaluated in Cypher. Preliminary experiments with our proof-of-concept prototype suggest that querying graph data with ontological knowledge may finally be within reach.

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arXiv2026

Shapes from Examples: Foundations of Shape Learning in Recursive SHACL

SHACL shapes enable data graph validation, making automatic shape learning essential for knowledge graph applications. We investigate the well-known fitting approach to this task: given sets P and N of positive and negative example nodes from an input graph, compute a shape expression C, possibly using shape names defined in a recursive shape catalogue, that validates at every node in P and none in N. We focus on the case where C is written in a core fragment of SHACL corresponding to the Description Logic ELI. For the catalogue, we consider the well-founded, stable, and supported semantics. We address fitting existence and most specific fitting computation, establish tight exponential-time upper bounds for both problems, and obtain polynomial bounds for relevant special cases.

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arXiv2026

Common Foundations for Recursive Shape Languages

As schema languages for RDF data become more mature, we are seeing efforts to extend them with recursive semantics, applying diverse ideas from logic programming and description logics. While ShEx has an official recursive semantics based on greatest fixpoints (GFP), the discussion for SHACL is ongoing and seems to be converging towards least fixpoints (LFP). A practical study we perform shows that, indeed, ShEx validators implement GFP, whereas SHACL validators are more heterogeneous. This situation creates tension between ShEx and SHACL, as their semantic commitments appear to diverge, potentially undermining interoperability and predictability. We aim to clarify this design space by comparing the main semantic options in a principled yet accessible way, hoping to engage both theoreticians and practitioners, especially those involved in developing tools and standards. We present a unifying formal semantics that treats LFP, GFP, and supported model semantics (SMS), clarifying their relationships and highlighting a duality between LFP and GFP on stratified fragments. Next, we investigate to which extent the directions taken by SHACL and ShEx are compatible. We show that, although ShEx and SHACL seem to be going in different directions, they include large fragments with identical expressive power. Moreover, there is a strong correspondence between these fragments through the aforementioned principle of duality. Finally, we present a complete picture of the data and combined complexity of ShEx and SHACL validation under LFP, GFP, and SMS, showing that SMS comes at a higher computational cost under standard complexity-theoretic assumptions.

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arXiv2025

Selective Use of Yannakakis' Algorithm to Improve Query Performance: Machine Learning to the Rescue

Query optimization has played a central role in database research for decades. However, more often than not, the proposed optimization techniques lead to a performance improvement in some, but not in all, situations. Therefore, we urgently need a methodology for designing a decision procedure that decides for a given query whether the optimization technique should be applied or not. In this work, we propose such a methodology with a focus on Yannakakis-style query evaluation as our optimization technique of interest. More specifically, we formulate this decision problem as an algorithm selection problem and we present a Machine Learning based approach for its solution. Empirical results with several benchmarks on a variety of database systems show that our approach indeed leads to a statistically significant performance improvement.

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arXiv2024

Soft and Constrained Hypertree Width

Hypertree decompositions provide a way to evaluate Conjunctive Queries (CQs) in polynomial time, where the exponent of this polynomial is determined by the width of the decomposition. In theory, the goal of efficient CQ evaluation therefore has to be a minimisation of the width. However, in practical settings, it turns out that there are also other properties of a decomposition that influence the performance of query evaluation. It is therefore of interest to restrict the computation of decompositions by constraints and to guide this computation by preferences. To this end, we propose a novel framework based on candidate tree decompositions, which allows us to introduce soft hypertree width (shw). This width measure is a relaxation of hypertree width (hw); it is never greater than hw and, in some cases, shw may actually be lower than hw. Most importantly, shw preserves the tractability of deciding if a given CQ is below some fixed bound, while offering more algorithmic flexibility. In particular, it provides a natural way to incorporate preferences and constraints into the computation of decompositions. A prototype implementation and preliminary experiments confirm that this novel framework can indeed have a practical impact on query evaluation.

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arXiv2024

Towards Practicable Algorithms for Rewriting Graph Queries beyond DL-Lite

Despite the many advantages that ontology-based data access (OBDA) has brought to a range of application domains, state-of-the-art OBDA systems still do not support popular graph database management systems such as Neo4j. Algorithms for query rewriting focus on languages like conjunctive queries and their unions, which are fragments of first-order logic and were developed for relational data. Such query languages are poorly suited for querying graph data. Moreover, they also limit the expressiveness of the ontology languages that admit rewritings, restricting them to those where the data complexity of reasoning is not higher than it is in first-order logic. In this paper, we propose a technique for rewriting a family of navigational queries for a suitably restricted fragment of ELHI that extends DL-Lite and that is NL-complete in data complexity. We implemented a proof-of-concept prototype that rewrites into Cypher queries, and tested it on a real-world cognitive neuroscience use case with promising results.

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arXiv2023

Expressive Power and Complexity Results for SIGNAL, an Industry-scale Process Query Language

With the increased adoption of process mining, there is also a need for practical solutions that work at industry scales. In this context, process querying methods (PQMs) have emerged as an important tool for drawing inferences from event logs. Here, it can be expected that industry approaches differ from academic ones, due to practical engineering and business considerations. To understand what is at the core of industry-scale PQMs, a formal analysis of the underlying languages can provide a solid foundation. To this end, we formally analyse SIGNAL, an industry-scale language for querying business process event logs developed by a large enterprise software vendor. The formal analysis shows that the core capabilities of SIGNAL, which we refer to as the SIGNAL Conjunctive Core, are more expressive than relational algebra and thus not captured by standard relational databases. We provide an upper-bound on the expressiveness via a reduction to semi-positive Datalog, which also leads to an upper bound of P-hard for the data complexity of evaluating SIGNAL Conjunctive Core queries. The findings provide first insights into how (real-world) process query languages are fundamentally different from the more generally prevalent structured query languages for querying relational databases and provide a rigorous foundation for extending the existing capabilities of the industry-scale state-of-the-art of process data querying.

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arXiv2023

Structure-Guided Query Evaluation: Towards Bridging the Gap from Theory to Practice

Join queries involving many relations pose a severe challenge to today's query optimisation techniques. To some extent, this is due to the fact that these techniques do not pay sufficient attention to structural properties of the query. In stark contrast, the Database Theory community has intensively studied structural properties of queries (such as acyclicity and various notions of width) and proposed efficient query evaluation techniques through variants of Yannakakis' algorithm. However, although most queries in practice actually are acyclic or have low width, structure-guided query evaluation techniques based on Yannakakis' algorithm have not found their way into mainstream database technology yet. The goal of this work is to address this gap between theory and practice and to demonstrate that the consideration of query structure can improve query evaluation performance on modern DBMSs significantly in cases that have been traditionally challenging. In particular, we study the performance of structure-guided query evaluation in three architecturally distinct DBMSs by rewriting SQL queries into a sequence of SQL statements that express an execution of Yannakakis' algorithm. Moreover, we identify a class of queries that is particularly well suited for our approach and allows query answering in a variety of common scenarios without materializing any join. Through empirical evaluation we show that structure-guided query evaluation can make the evaluation of many difficult join queries feasible whereas their evaluation requires a prohibitive amount of time and memory on current DBMSs.

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arXiv2022

Incremental Updates of Generalized Hypertree Decompositions

Structural decomposition methods, such as generalized hypertree decompositions, have been successfully used for solving constraint satisfaction problems (CSPs). As decompositions can be reused to solve CSPs with the same constraint scopes, investing resources in computing good decompositions is beneficial, even though the computation itself is hard. Unfortunately, current methods need to compute a completely new decomposition even if the scopes change only slightly. In this paper, we make the first steps toward solving the problem of updating the decomposition of a CSP $P$ so that it becomes a valid decomposition of a new CSP $P'$ produced by some modification of $P$. Even though the problem is hard in theory, we propose and implement a framework for effectively updating GHDs. The experimental evaluation of our algorithm strongly suggests practical applicability.

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arXiv2021

Fast Parallel Hypertree Decompositions in Logarithmic Recursion Depth

Modern trends in data collection are bringing current mainstream techniques for database query processing to their limits. Consequently, various novel approaches for efficient query processing are being actively studied. One such approach is based on hypertree decompositions (HDs), which have been shown to carry great potential to process complex queries more efficiently and with stronger theoretical guarantees. However, using HDs for query execution relies on the difficult task of computing decompositions of the query structure, which guides the efficient execution of the query. From theoretical results we know that the performance of purely sequential methods is inherently limited, yet the problem is susceptible to parallelisation. In this paper we propose the first algorithm for computing hypertree decompositions that is well-suited for parallelisation. The proposed algorithm log-k-decomp requires only a logarithmic number of recursion levels and additionally allows for highly parallelised pruning of the search space by restriction to balanced separators. We provide detailed experimental evaluation over the HyperBench benchmark and demonstrate that our approach is highly effective especially for complex queries.

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arXiv2020

The HyperTrac Project: Recent Progress and Future Research Directions on Hypergraph Decompositions

Constraint Satisfaction Problems (CSPs) play a central role in many applications in Artificial Intelligence and Operations Research. In general, solving CSPs is NP-complete. The structure of CSPs is best described by hypergraphs. Therefore, various forms of hypergraph decompositions have been proposed in the literature to identify tractable fragments of CSPs. However, also the computation of a concrete hypergraph decomposition is a challenging task in itself. In this paper, we report on recent progress in the study of hypergraph decompositions and we outline several directions for future research.

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