arXiv subjects

Chanabasayya . M. Vastrad

Publications and source records attributed to Chanabasayya . M. Vastrad.

5 recordsLinked to original sources

arXiv2013

Predictive Comparative QSAR Analysis Of As 5-Nitofuran-2-YL Derivatives Myco bacterium tuberculosis H37RV Inhibitors Bacterium Tuberculosis H37RV Inhibitors

Antitubercular activity of 5-nitrofuran-2-yl Derivatives series were subjected to Quantitative Structure Activity Relationship (QSAR) Analysis with an effort to derive and understand a correlation between the biological activity as response variable and different molecular descriptors as independent variables. QSAR models are built using 40 molecular descriptor dataset. Different statistical regression expressions were got using Partial Least Squares (PLS),Multiple Linear Regression (MLR) and Principal Component Regression (PCR) techniques. The among these technique, Partial Least Square Regression (PLS) technique has shown very promising result as compared to MLR technique A QSAR model was build by a training set of 30 molecules with correlation coefficient ($r^2$) of 0.8484, significant cross validated correlation coefficient ($q^2$) is 0.0939, F test is 48.5187, ($r^2$) for external test set (pred$_r^2$) is -0.5604, coefficient of correlation of predicted data set (pred$_r^2se$) is 0.7252 and degree of freedom is 26 by Partial Least Squares Regression technique.

cs.CE↗

arXiv2013

A Robust Missing Value Imputation Method MifImpute For Incomplete Molecular Descriptor Data And Comparative Analysis With Other Missing Value Imputation Methods

Missing data imputation is an important research topic in data mining. Large-scale Molecular descriptor data may contains missing values (MVs). However, some methods for downstream analyses, including some prediction tools, require a complete descriptor data matrix. We propose and evaluate an iterative imputation method MiFoImpute based on a random forest. By averaging over many unpruned regression trees, random forest intrinsically constitutes a multiple imputation scheme. Using the NRMSE and NMAE estimates of random forest, we are able to estimate the imputation error. Evaluation is performed on two molecular descriptor datasets generated from a diverse selection of pharmaceutical fields with artificially introduced missing values ranging from 10% to 30%. The experimental result demonstrates that missing values has a great impact on the effectiveness of imputation techniques and our method MiFoImpute is more robust to missing value than the other ten imputation methods used as benchmark. Additionally, MiFoImpute exhibits attractive computational efficiency and can cope with high-dimensional data.

cs.CE↗

arXiv2013

Performance Analysis Of Regularized Linear Regression Models For Oxazolines And Oxazoles Derivitive Descriptor Dataset

Regularized regression techniques for linear regression have been created the last few ten years to reduce the flaws of ordinary least squares regression with regard to prediction accuracy. In this paper, new methods for using regularized regression in model choice are introduced, and we distinguish the conditions in which regularized regression develops our ability to discriminate models. We applied all the five methods that use penalty-based (regularization) shrinkage to handle Oxazolines and Oxazoles derivatives descriptor dataset with far more predictors than observations. The lasso, ridge, elasticnet, lars and relaxed lasso further possess the desirable property that they simultaneously select relevant predictive descriptors and optimally estimate their effects. Here, we comparatively evaluate the performance of five regularized linear regression methods The assessment of the performance of each model by means of benchmark experiments is an established exercise. Cross-validation and resampling methods are generally used to arrive point evaluates the efficiencies which are compared to recognize methods with acceptable features. Predictive accuracy was evaluated using the root mean squared error (RMSE) and Square of usual correlation between predictors and observed mean inhibitory concentration of antitubercular activity (R square). We found that all five regularized regression models were able to produce feasible models and efficient capturing the linearity in the data. The elastic net and lars had similar accuracies as well as lasso and relaxed lasso had similar accuracies but outperformed ridge regression in terms of the RMSE and R square metrics.

cs.LG↗

arXiv2013

Identification Of Outliers In Oxazolines AND Oxazoles High Dimension Molecular Descriptor Dataset Using Principal Component Outlier Detection Algorithm And Comparative Numerical Study Of Other Robust Estimators

From the past decade outlier detection has been in use. Detection of outliers is an emerging topic and is having robust applications in medical sciences and pharmaceutical sciences. Outlier detection is used to detect anomalous behaviour of data. Typical problems in Bioinformatics can be addressed by outlier detection. A computationally fast method for detecting outliers is shown, that is particularly effective in high dimensions. PrCmpOut algorithm make use of simple properties of principal components to detect outliers in the transformed space, leading to significant computational advantages for high dimensional data. This procedure requires considerably less computational time than existing methods for outlier detection. The properties of this estimator (Outlier error rate (FN), Non-Outlier error rate(FP) and computational costs) are analyzed and compared with those of other robust estimators described in the literature through simulation studies. Numerical evidence based Oxazolines and Oxazoles molecular descriptor dataset shows that the proposed method performs well in a variety of situations of practical interest. It is thus a valuable companion to the existing outlier detection methods.

cs.CE↗

arXiv2013

Performance Analysis Of Neural Network Models For Oxazolines And Oxazoles Derivatives Descriptor Dataset

Neural networks have been used successfully to a broad range of areas such as business, data mining, drug discovery and biology. In medicine, neural networks have been applied widely in medical diagnosis, detection and evaluation of new drugs and treatment cost estimation. In addition, neural networks have begin practice in data mining strategies for the aim of prediction, knowledge discovery. This paper will present the application of neural networks for the prediction and analysis of antitubercular activity of Oxazolines and Oxazoles derivatives. This study presents techniques based on the development of Single hidden layer neural network (SHLFFNN), Gradient Descent Back propagation neural network (GDBPNN), Gradient Descent Back propagation with momentum neural network (GDBPMNN), Back propagation with Weight decay neural network (BPWDNN) and Quantile regression neural network (QRNN) of artificial neural network (ANN) models Here, we comparatively evaluate the performance of five neural network techniques. The evaluation of the efficiency of each model by ways of benchmark experiments is an accepted application. Cross-validation and resampling techniques are commonly used to derive point estimates of the performances which are compared to identify methods with good properties. Predictive accuracy was evaluated using the root mean squared error (RMSE), Coefficient determination(???), mean absolute error(MAE), mean percentage error(MPE) and relative square error(RSE). We found that all five neural network models were able to produce feasible models. QRNN model is outperforms with all statistical tests amongst other four models.

cs.CE↗