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Chao Tang

Publications and source records attributed to Chao Tang.

At least 73 records · Page 4Linked to original sources

Stochastic gradient descent introduces an effective landscape-dependent regularization favoring flat solutions

Generalization is one of the most important problems in deep learning (DL). In the overparameterized regime in neural networks, there exist many low-loss solutions that fit the training data equally well. The key question is which solution is more generalizable. Empirical studies showed a strong correlation between flatness of the loss landscape at a solution and its generalizability, and stochastic gradient descent (SGD) is crucial in finding the flat solutions. To understand how SGD drives the learning system to flat solutions, we construct a simple model whose loss landscape has a continuous set of degenerate (or near degenerate) minima. By solving the Fokker-Planck equation of the underlying stochastic learning dynamics, we show that due to its strong anisotropy the SGD noise introduces an additional effective loss term that decreases with flatness and has an overall strength that increases with the learning rate and batch-to-batch variation. We find that the additional landscape-dependent SGD-loss breaks the degeneracy and serves as an effective regularization for finding flat solutions. Furthermore, a stronger SGD noise shortens the convergence time to the flat solutions. However, we identify an upper bound for the SGD noise beyond which the system fails to converge. Our results not only elucidate the role of SGD for generalization they may also have important implications for hyperparameter selection for learning efficiently without divergence.

cond-mat.dis-nn↗

Spontaneous mechanical and energetic state transitions during Caenorhabditis elegans gastrulation

Gastrulation, namely cell internalization, is a significant milestone during the development of metazoans from worm to human, which generates multiple embryonic layers with distinct cell fates and spatial organizations. Although many molecular activities are known to facilitate this process, in this paper, we focus on gastrulation of the nematode Caenorhabditis elegans and theoretically demonstrate that even a group of cells with only isotropic repulsive and attractive interactions can experience such internalization behavior when dividing within a confined space. As the cell number increases and cell size decreases, the cells contacted to the eggshell become closer to each other along with harder lateral compression, and a cell that internalizes could effectively increase the cell neighbor distance and lower the potential energy of the system. The multicellular structure transits from single- to double-layer spontaneously with bistable states existing from 15- to 44-cell stages, near the gastrulation timing in vivo. Specifically, the cells with a larger size or placed near a smaller-curvature boundary are easier to internalize. Actively regulating a few cells' internalizations can make the morphogenesis noise-resistant. Our work successfully recaptures the key characteristics in C. elegans gastrulation and provides a rational interpretation of how this phenomenon emerges and is optimally programmed.

q-bio.CB↗

Primitive Shape Recognition for Object Grasping

Shape informs how an object should be grasped, both in terms of where and how. As such, this paper describes a segmentation-based architecture for decomposing objects sensed with a depth camera into multiple primitive shapes, along with a post-processing pipeline for robotic grasping. Segmentation employs a deep network, called PS-CNN, trained on synthetic data with 6 classes of primitive shapes and generated using a simulation engine. Each primitive shape is designed with parametrized grasp families, permitting the pipeline to identify multiple grasp candidates per shape region. The grasps are rank ordered, with the first feasible one chosen for execution. For task-free grasping of individual objects, the method achieves a 94.2% success rate placing it amongst the top performing grasp methods when compared to top-down and SE(3)-based approaches. Additional tests involving variable viewpoints and clutter demonstrate robustness to setup. For task-oriented grasping, PS-CNN achieves a 93.0% success rate. Overall, the outcomes support the hypothesis that explicitly encoding shape primitives within a grasping pipeline should boost grasping performance, including task-free and task-relevant grasp prediction.

cs.RO↗

Relationship Oriented Affordance Learning through Manipulation Graph Construction

In this paper, we propose Manipulation Relationship Graph (MRG), a novel affordance representation which captures the underlying manipulation relationships of an arbitrary scene. To construct such a graph from raw visual observations, a deep nerual network named AR-Net is introduced. It consists of an Attribute module and a Context module, which guide the relationship learning at object and subgraph level respectively. We quantitatively validate our method on a novel manipulation relationship dataset named SMRD. To evaluate the performance of the proposed model and representation, both visual perception and physical manipulation experiments are conducted. Overall, AR-Net along with MRG outperforms all baselines, achieving the success rate of 88.89% on task relationship recognition (TRR) and 73.33% on task completion (TC)

cs.RO↗

Selective crystal growth of indium selenide compounds from saturated solutions grown in a selenium vapor

Indium selenide compounds are promising materials for energy conversion, spintronic applications, and chemical sensing. However, it is difficult to grow stoichiometric indium selenide crystals due to the high equilibrium selenium vapor pressure and the complicated phase equilibrium system of indium selenide compounds. In this paper, we apply a novel and convenient crystal growth method, in which the saturated solution is grown by the application of a selenium vapor. In this method, selenium vapor at a pressure higher than the saturated vapor pressure is applied to molten indium, such that the selenium continuously dissolves into the indium solution until the solubility at the growth temperature is reached; then a slow cooling process results in crystallization. The selenium dose is matched to its solubility so that indium selenide compounds can be selectively grown just by controlling the temperature without the need to consider the chemical ratio in the solution. The pressure of the vapor is controlled during the whole growth process so that any deviation from a stoichiometric composition in the crystal can be controlled. Both InSe and In2Se3 were successfully grown using this method, and we have investigated the growth mechanism and found the growth window for each compound. This study presents a novel and convenient approach to fabricating transitional metal chalcogenides without deficiencies in the chalcogen element.

cond-mat.mtrl-sci↗

Ground state configuration of hydrogenated Biphenylene sheet: structure, stabilities, electronic and mechanical properties from first-principles calculations

Based on first-principles calculations, the ground state configuration (Cmma-CH) of hydrogenated Biphenylene sheet (Science, 372, 852, 2021) is carefully identified from hundreds of possible candidates generated by RG2 code (Phys. Rev. B., 97, 014104, 2018). Cmma-CH contains four benzene molecules in its crystalline cell and all of them are inequivalent due to its Cmma symmetry. The hydrogen atoms in Cmma-CH bond to carbon atoms in each benzene with a boat-like (boat-1:DDUDDU) up/down sequence and reversed boat-1 (UUDUUD) sequence in adjacent benzene rings. It is energetically less stable than the previously proposed allotropes (chair, tricycle, stirrup, boat-1, boat-2 and twist-boat) of hydrogenated graphene, but its formation energy from hydrogenating Biphenylene sheet is remarkably lower than those for hydrogenating graphene to graphane. Our results confirm that Cmma-CH is mechanically and dynamically stable 2D hydrocarbon phase which is expectable to be experimentally realized by hydrogenating the synthesized Biphenylene sheet. The HSE06 based band structures show that Cmma-CH is an indirect band gap insulators with a gap of 4.645 eV.

cond-mat.mtrl-sci↗

Photon Conversion and Interaction on Chip

The conversion and interaction between quantum signals at a single-photon level are essential for scalable quantum photonic information technology. Using a fully-optimized, periodically-poled lithium niobate microring, we demonstrate ultra-efficient sum-frequency generation on chip. The external quantum efficiency reaches $(65\pm3)\%$ with only $(104\pm4)$ $μ$W pump power, improving the state-of-the-art by over one order of magnitude. At the peak conversion, $3\times10^{-5}$ noise photon is created during the cavity lifetime, which meets the requirement of quantum applications using single-photon pulses. Using pump and signal in single-photon coherent states, we directly measure the conversion probability produced by a single pump photon to be $10^{-5}$ -- breaking the record by 100 times -- and the photon-photon coupling strength to be 9.1 MHz. Our results mark a new milestone toward quantum nonlinear optics at the ultimate single photon limit, creating new background in highly integrated photonics and quantum optical computing.

physics.optics↗

Speed and fate diversity tradeoff in nematode's early embryogenesis

Nematode species are well-known for their invariant cell lineage pattern during development. Combining knowledge about the fate specification induced by asymmetric division and the anti-correlation between cell cycle length and cell volume in Caenorhabditis elegans, we propose a model to simulate lineage initiation by altering cell volume segregation ratio in each division, and quantify the derived pattern's performance in proliferation speed, fate diversity and space robustness. The stereotypic pattern in C. elegans embryo is found to be one of the most optimal solutions taking minimum time to achieve the cell number before gastrulation, by programming asymmetric division as a strategy.

q-bio.CB↗

Efficient Frequency Doubling with Active Stabilization on Chip

Thin-film lithium niobate (TFLN) is superior for integrated nanophotonics due to its outstanding properties in nearly all aspects: strong second-order nonlinearity, fast and efficient electro-optic effects, wide transparency window, and little two photon absorption and free carrier scattering. Together, they permit highly integrated nanophotonic circuits capable of complex photonic processing by incorporating disparate elements on the same chip. Yet, there has to be a demonstration that synergizes those superior properties for system advantage. Here we demonstrate such a chip that capitalizes on TFLNs favorable ferroelectricity, high second-order nonlinearity, and strong electro-optic effects. It consists of a monolithic circuit integrating a Z-cut, quasi-phase matched microring with high quality factor and a phase modulator used in active feedback control. By Pound-Drever-Hall locking, it realizes stable frequency doubling at about 50% conversion with only milliwatt pump, marking the highest by far among all nanophotonic platforms with milliwatt pumping. Our demonstration addresses a long-outstanding challenge facing cavity-based optical processing, including frequency conversion, frequency comb generation, and all-optical switching, whose stable performance is hindered by photorefractive or thermal effects. Our results further establish TFLN as an excellent material capable of optical multitasking, as desirable to build multi-functional chip devices.

physics.optics↗

Photon Conversion in Thin-film Lithium Niobate Nanowaveguides: A Noise Analysis

Wavelength transduction of single-photon signals is indispensable to networked quantum applications, particularly those incorporating quantum memories. Lithium niobate nanophotonic devices have demonstrated favorable linear, nonlinear, and electro-optical properties to deliver this crucial function while offering superiror efficiency, integrability, and scalability. Yet, their quantum noise level--an crucial metric for any single-photon based application--has yet to be understood. In this work, we report the first study with the focus on telecom to near-visible conversion driven by a telecom pump of small detuning, for practical considerations in distributed quantum processing over fiber networks. Our results find the noise level to be on the order of $10^{-4}$ photons per time-frequency mode for high conversion, allowing faithful pulsed operations. Through carefully analyzing the origins of such noise and each's dependence on the pump power and wavelength detuning, we have also identified a formula for noise suppression to $10^{-5}$ photons per mode. Our results assert a viable, low-cost, and modular approach to networked quantum processing and beyond using lithium niobate nanophotonics.

physics.optics↗

Dual-energy CT Reconstruction from Dual Quarter Scans

Compared with conventional single-energy computed tomography (CT), dual-energy CT (DECT) provides better material differentiation but most DECT imaging systems require dual full-angle projection data at different X-ray spectra. Relaxing the requirement of data acquisition is a particularly attractive research to promote the applications of DECT in a wide range of imaging areas. In this work, we design a novel DECT imaging scheme with dual quarter scans and propose an efficient method to reconstruct the desired DECT images from dual limited-angle projection data, which enables DECT on imaging configurations with half-scan and largely reduces scanning angles and radiation doses. We first study the characteristics of image artifacts under dual quarter scans scheme, and find that the directional limited-angle artifacts of DECT images are complementarily distributed in image domain because the corresponding X-rays of high- and low-energy scans are orthogonal. Inspired by this finding, a fusion CT image is generated by integrating the limited-angle DECT images of dual quarter scans. This strategy largely reduces the limited-angle artifacts and preserves the image edges and inner structures. Utilizing the capability of neural network in the modeling of nonlinear problem, a novel Anchor network with single-entry double-out architecture is designed in this work to yield the desired DECT images from the generated fusion CT image. Experimental results on the simulated and real data verify the effectiveness of the proposed method.

physics.med-ph↗

Ultra-bright Quantum Photon Sources on Chip

Quantum photon sources of high rate, brightness, and purity are increasingly desirable as quantum information systems are quickly scaled up and applied to many fields. Using a periodically poled lithium niobate microresonator on chip, we demonstrate photon-pair generation at high rates of 8.5 MHz and 36.3 MHz using only 3.4-$μ$W and 13.4-$μ$W pump power, respectively, marking orders of magnitude improvement over the state-of-the-art. The measured coincidence to accidental ratio is well above 100 at those high rates and reaches $14,682\pm 4427$ at a lower pump power. The same chip enables heralded single-photon generation at tens of megahertz rates, each with low auto-correlation $g^{(2)}_{H}(0)=0.008$ and $0.097$ for the microwatt pumps. Such distinct performance, facilitated by the chip device's noiseless and giant optical nonlinearity, will contribute to the forthcoming pervasive adoption of quantum optical information technologies.

physics.optics↗

Recognizing Object Affordances to Support Scene Reasoning for Manipulation Tasks

Affordance information about a scene provides important clues as to what actions may be executed in pursuit of meeting a specified goal state. Thus, integrating affordance-based reasoning into symbolic action plannning pipelines would enhance the flexibility of robot manipulation. Unfortunately, the top performing affordance recognition methods use object category priors to boost the accuracy of affordance detection and segmentation. Object priors limit generalization to unknown object categories. This paper describes an affordance recognition pipeline based on a category-agnostic region proposal network for proposing instance regions of an image across categories. To guide affordance learning in the absence of category priors, the training process includes the auxiliary task of explicitly inferencing existing affordances within a proposal. Secondly, a self-attention mechanism trained to interpret each proposal learns to capture rich contextual dependencies through the region. Visual benchmarking shows that the trained network, called AffContext, reduces the performance gap between object-agnostic and object-informed affordance recognition. AffContext is linked to the Planning Domain Definition Language (PDDL) with an augmented state keeper for action planning across temporally spaced goal-oriented tasks. Manipulation experiments show that AffContext can successfully parse scene content to seed a symbolic planner problem specification, whose execution completes the target task. Additionally, task-oriented grasping for cutting and pounding actions demonstrate the exploitation of multiple affordances for a given object to complete specified tasks.

cs.RO↗

Generative Adversarial Network-Based Sinogram Super-Resolution for Computed Tomography Imaging

Compared with the conventional 1*1 acquisition mode of projection in computed tomography (CT) image reconstruction, the 2*2 acquisition mode improves the collection efficiency of the projection and reduces the X-ray exposure time. However, the collected projection based on the 2*2 acquisition mode has low resolution (LR) and the reconstructed image quality is poor, thus limiting the use of this mode in CT imaging systems. In this study, a novel sinogram-super-resolution generative adversarial network (SSR-GAN) model is proposed to obtain high-resolution (HR) sinograms from LR sinograms, thereby improving the reconstruction image quality under the 2*2 acquisition mode. The proposed generator is based on the residual network for LR sinogram feature extraction and super-resolution (SR) sinogram generation. A relativistic discriminator is designed to render the network capable of obtaining more realistic SR sinograms. Moreover, we combine the cycle consistency loss, sinogram domain loss, and reconstruction image domain loss in the total loss function to supervise SR sinogram generation. Then, a trained model can be obtained by inputting the paired LR/HR sinograms into the network. Finally, the classic FBP reconstruction algorithm is used for CT image reconstruction based on the generated SR sinogram. The qualitative and quantitative results of evaluations on digital and real data illustrate that the proposed model not only obtains clean SR sinograms from noisy LR sinograms but also outperforms its counterparts.

physics.med-ph↗

New structure canditates for the experimentally synthesized heptazine-based and triazine-based two dimensional graphitic carbon nitride

The widely used crystal structures for both heptazine-based and triazine-based two-dimensional (2D) graphitic carbon nitride (g-C$_3$N$_4$) are the flat P-6m2 configurations. However, the experimentally synthesized 2D g-C$_3$N$_4$ possess thickness ranging in 0.2-0.5 nm, indicating that the theoretically used flat P-6m2 configurations are not the correct ground states. In this work, we propose three new corrugated structures P321, P3m1 and Pca21 with energies of 66 (86), 77 (87) and 78 (89) meV/atom lower than that of the corresponding heptazine-based (triazine-based) g-C$_3$N$_4$ in flat P-6m2 configuration, respectively. These corrugated structures have very similar periodic patterns to the flat P-6m2 ones and they are difficult to be distinguished from each other according to their top-views. The optimized thicknesses of the three corrugated structures ranging in 1.347-3.142 Å are in good agreement with the experimental results. The first-principles results show that these corrugated structural candidates are also semiconductors with band gaps slightly larger than those of the correspondingly flat P-6m2 ones. Furthermore, they possess also suitable band edge positions for sun-light-driven water-splitting at both $pH=0$ and $pH=7$ environments. Our results show that these three new structures are more promising candidates for the experimentally synthesized g-C$_3$N$_4$.

cond-mat.mtrl-sci↗

Ultra-efficient and highly-tunable second-harmonic generation in Z-cut periodically poled lithium niobate nanowaveguides

Thin-film lithium niobate on insulator (LNOI) has emerged as a superior integrated-photonics platform for linear, nonlinear, and electro-optics. Here we combine quasi-phase-matching, dispersion engineering, and tight mode confinement to realize nonlinear parametric processes with both high efficiency and wide wavelength tunability. On a millimeter-long, Z-cut LNOI waveguide, we demonstrate ultra-efficient ($1900\pm500 \% $W$^{-1}$cm$^{-2}$) and highly tunable (-1.71 nm/K) second-harmonic generation from 1530 to 1583 nm by type-0 quasi-phase-matching. Our technique is applicable to optical harmonic generation, quantum light sources, frequency conversion, and many other photonic information processing across visible to mid-IR spectral bands.

physics.optics↗

Deciphering gene regulation from gene expression dynamics using deep neural network

Complex biological functions are carried out by the interaction of genes and proteins. Uncovering the gene regulation network behind a function is one of the central themes in biology. Typically, it involves extensive experiments of genetics, biochemistry and molecular biology. In this paper, we show that much of the inference task can be accomplished by a deep neural network (DNN), a form of machine learning or artificial intelligence. Specifically, the DNN learns from the dynamics of the gene expression. The learnt DNN behaves like an accurate simulator of the system, on which one can perform in-silico experiments to reveal the underlying gene network. We demonstrate the method with two examples: biochemical adaptation and the gap-gene patterning in fruit fly embryogenesis. In the first example, the DNN can successfully find the two basic network motifs for adaptation - the negative feedback and the incoherent feed-forward. In the second and much more complex example, the DNN can accurately predict behaviors of essentially all the mutants. Furthermore, the regulation network it uncovers is strikingly similar to the one inferred from experiments. In doing so, we develop methods for deciphering the gene regulation network hidden in the DNN "black box". Our interpretable DNN approach should have broad applications in genotype-phenotype mapping.

q-bio.QM↗

Theoretical prediction of a low-energy Stone-Wales graphene with intrinsic type-III Dirac-cone

Based on first-principles method we predict a new low-energy Stone-Wales graphene SW40, which has an orthorhombic lattice with Pbam symmetry and 40 carbon atoms in its crystalline cell forming well-arranged Stone-Wales patterns. The calculated total energy of SW40 is just about 133 meV higher than that of graphene, indicating its excellent stability exceeds all the previously proposed graphene allotropes. We find that SW40 processes intrinsic Type-III Dirac-cone (Phys. Rev. Lett., 120, 237403, 2018) formed by band-crossing of a local linear-band and a local flat-band, which can result in highly anisotropic Fermions in the system. Interestingly, such intrinsic type-III Dirac-cone can be effectively tuned by inner-layer strains and it will be transferred into Type-II and Type-I Dirac-cones under tensile and compressed strains, respectively. Finally, a general tight-binding model was constructed to understand the electronic properties nearby the Fermi-level in SW40. The results show that type-III Dirac-cone feature can be well understood by the $π$-electron interactions between adjacent Stone-Wales defects.

physics.comp-ph↗