arXiv subjects

Chaomei Chen

Publications and source records attributed to Chaomei Chen.

18 recordsLinked to original sources

arXiv2021

The Boundary-Spanning Mechanisms of Nobel Prize Winning Papers

The breakthrough potentials of research papers can be explained by their boundary-spanning qualities. Here, for the first time, we apply the structural variation analysis (SVA) model and its affiliated metrics to investigate the extent to which such qualities characterize a group of Nobel Prize winning papers. We find that these papers share remarkable boundary-spanning traits, marked by exceptional abilities to connect disparate and topically-diverse clusters of research papers. Further, their publications exert structural variations on the scale that significantly alters the betweenness centrality distributions of existing intellectual space. Overall, SVA not only provides a set of leading indicators for describing future Nobel Prize winning papers, but also broadens our understanding of the similar prize-winning properties that may have been overlooked among other regular publications.

cs.DL↗

arXiv2020

A Glimpse of the First Eight Months of the COVID-19 Literature on Microsoft Academic Graph: Themes, Citation Contexts, and Uncertainties

As scientists worldwide search for answers to the overwhelmingly unknown behind the deadly pandemic, the literature concerning COVID-19 has been growing exponentially. Keeping abreast of the body of literature at such a rapidly advancing pace poses significant challenges not only to active researchers but also to the society as a whole. Although numerous data resources have been made openly available, the analytic and synthetic process that is essential in effectively navigating through the vast amount of information with heightened levels of uncertainty remains a significant bottleneck. We introduce a generic method that facilitates the data collection and sense-making process when dealing with a rapidly growing landscape of a research domain such as COVID-19 at multiple levels of granularity. The method integrates the analysis of structural and temporal patterns in scholarly publications with the delineation of thematic concentrations and the types of uncertainties that may offer additional insights into the complexity of the unknown. We demonstrate the application of the method in a study of the COVID-19 literature.

cs.DL↗

arXiv2019

Convolutional Quantum-Like Language Model with Mutual-Attention for Product Rating Prediction

Recommender systems are designed to help mitigate information overload users experience during online shopping. Recent work explores neural language models to learn user and item representations from user reviews and combines such representations with rating information. Most existing convolutional-based neural models take pooling immediately after convolution and loses the interaction information between the latent dimension of convolutional feature vectors along the way. Moreover, these models usually take all feature vectors at higher levels as equal and do not take into consideration that some features are more relevant to this specific user-item context. To bridge these gaps, this paper proposes a convolutional quantum-like language model with mutual-attention for rating prediction (ConQAR). By introducing a quantum-like density matrix layer, interactions between latent dimensions of convolutional feature vectors are well captured. With the attention weights learned from the mutual-attention layer, final representations of a user and an item absorb information from both itself and its counterparts for making rating prediction. Experiments on two large datasets show that our model outperforms multiple state-of-the-art CNN-based models. We also perform an ablation test to analyze the independent effects of the two components of our model. Moreover, we conduct a case study and present visualizations of the quantum probabilistic distributions in one user and one item review document to show that the learned distributions capture meaningful information about this user and item, and can be potentially used as textual profiling of the user and item.

cs.IR↗

arXiv2019

Visualizing a Field of Research: A Methodology of Systematic Scientometric Reviews

Systematic scientometric reviews, empowered by scientometric and visual analytic techniques, offer opportunities to improve the timeliness, accessibility, and reproducibility of conventional systematic reviews. While increasingly accessible science mapping tools enable end users to visualize the structure and dynamics of a research field, a common bottleneck in the current practice is the construction of a collection of scholarly publications as the input of the subsequent scientometric analysis and visualization. End users often have to face a dilemma in the preparation process: the more they know about a knowledge domain, the easier it is for them to find the relevant data to meet their needs adequately; the little they know, the harder the problem is. What can we do to avoid missing something valuable but beyond our initial description? In this article, we introduce a flexible and generic methodology, cascading citation expansion, to increase the quality of constructing a bibliographic dataset for systematic reviews. Furthermore, the methodology simplifies the conceptualization of globalism and localism in science mapping and unifies them on a consistent and continuous spectrum. We demonstrate an application of the methodology to the research of literature-based discovery and compare five datasets constructed based on three use scenarios, namely a conventional keyword-based search (one dataset), an expansion process starting with a groundbreaking article of the knowledge domain (two datasets), and an expansion process starting with a recently published review article by a prominent expert in the domain (two datasets). The unique coverage of each of the datasets is inspected through network visualization overlays with reference to other datasets in a broad and integrated context.

cs.DL↗

arXiv2018

Cascading Citation Expansion

Digital Science's Dimensions is envisaged as a next-generation research and discovery platform for a better and more efficient access to cross-referenced scholarly publications, grants, patents, and clinical trials. As a new addition to the growing open citation resources, it offers opportunities that may benefit a wide variety of stakeholders of scientific publications from researchers, policy makers, and the general public. In this article, we explore and demonstrate some of the practical potentials in terms of cascading citation expansions. Given a set of publications, the cascading citation expansion process can be successively applied to a set of articles so as to extend the coverage to more and more relevant articles through citation links. Although the conceptual origin can be traced back to Garfield's citation indexing, it has been largely limited, until recently, to the few who have unrestricted access to a citation database that is large enough to sustain such iterative expansions. Building on the open API of Dimensions, we integrate cascading citation expansion functions in CiteSpace and demonstrate how one may benefit from these new capabilities. In conclusion, cascading citation expansion has the potential to improve our understanding of the structure and dynamics of scientific knowledge.

cs.DL↗

arXiv2018

Predictive Effects of Novelty Measured by Temporal Embeddings on the Growth of Scientific Literature

Novel scientific knowledge is constantly produced by the scientific community. Understanding the level of novelty characterized by scientific literature is key for modeling scientific dynamics and analyzing the growth mechanisms of scientific knowledge. Metrics derived from bibliometrics and citation analysis were effectively used to characterize the novelty in scientific development. However, time is required before we can observe links between documents such as citation links or patterns derived from the links, which makes these techniques more effective for retrospective analysis than predictive analysis. In this study, we present a new approach to measuring the novelty of a research topic in a scientific community over a specific period by tracking semantic changes of the terms and characterizing the research topic in their usage context. The semantic changes are derived from the text data of scientific literature by temporal embedding learning techniques. We validated the effects of the proposed novelty metric on predicting the future growth of scientific publications and investigated the relations between novelty and growth by panel data analysis applied in a large-scale publication dataset (MEDLINE/PubMed). Key findings based on the statistical investigation indicate that the novelty metric has significant predictive effects on the growth of scientific literature and the predictive effects may last for more than ten years. We demonstrated the effectiveness and practical implications of the novelty metric in three case studies.

cs.DL↗

arXiv2017

Understanding the Changing Roles of Scientific Publications via Citation Embeddings

Researchers may describe different aspects of past scientific publications in their publications and the descriptions may keep changing in the evolution of science. The diverse and changing descriptions (i.e., citation context) on a publication characterize the impact and contributions of the past publication. In this article, we aim to provide an approach to understanding the changing and complex roles of a publication characterized by its citation context. We described a method to represent the publications' dynamic roles in science community in different periods as a sequence of vectors by training temporal embedding models. The temporal representations can be used to quantify how much the roles of publications changed and interpret how they changed. Our study in the biomedical domain shows that our metric on the changes of publications' roles is stable over time at the population level but significantly distinguish individuals. We also show the interpretability of our methods by a concrete example.

cs.DL↗

arXiv2017

A Scalable and Adaptive Method for Finding Semantically Equivalent Cue Words of Uncertainty

Scientific knowledge is constantly subject to a variety of changes due to new discoveries, alternative interpretations, and fresh perspectives. Understanding uncertainties associated with various stages of scientific inquiries is an integral part of scientists' domain expertise and it serves as the core of their meta-knowledge of science. Despite the growing interest in areas such as computational linguistics, systematically characterizing and tracking the epistemic status of scientific claims and their evolution in scientific disciplines remains a challenge. We present a unifying framework for the study of uncertainties explicitly and implicitly conveyed in scientific publications. The framework aims to accommodate a wide range of uncertain types, from speculations to inconsistencies and controversies. We introduce a scalable and adaptive method to recognize semantically equivalent cues of uncertainty across different fields of research and accommodate individual analysts' unique perspectives. We demonstrate how the new method can be used to expand a small seed list of uncertainty cue words and how the validity of the expanded candidate cue words are verified. We visualize the mixture of the original and expanded uncertainty cue words to reveal the diversity of expressions of uncertainty. These cue words offer a novel resource for the study of uncertainty in scientific assertions.

cs.DL↗

arXiv2017

Eugene Garfield's Scholarly Impact: A Scientometric Review

The concept of citation indexing has become deeply involved in many parts of research itself and the broad environment in which research plays an integral role, ranging from research evaluation, numerous indicators, to an increasingly wider range of scientific disciplines. In this article, we pay tribute to Eugene Garfield and present a scientometric review of the intellectual assets that he brought to us. In addition, we explore the intellectual landscape that has subsequently evolved in connection to many of his ideas. We illustrate what systematic reviews of the scientific literature may reveal and what we may learn from the rich information conveyed through citation-induced patterns. The study is conducted with CiteSpace, one of many science mapping tools based on data from the Web of Science and Scopus. Without Garfield's inventions, none of these would be possible.

cs.DL↗

arXiv2017

LitStoryTeller: An Interactive System for Visual Exploration of Scientific Papers Leveraging Named entities and Comparative Sentences

The present study proposes LitStoryTeller, an interactive system for visually exploring the semantic structure of a scientific article. We demonstrate how LitStoryTeller could be used to answer some of the most fundamental research questions, such as how a new method was built on top of existing methods, based on what theoretical proof and experimental evidences. More importantly, LitStoryTeller can assist users to understand the full and interesting story a scientific paper, with a concise outline and important details. The proposed system borrows a metaphor from screen play, and visualizes the storyline of a scientific paper by arranging its characters (scientific concepts or terminologies) and scenes (paragraphs/sentences) into a progressive and interactive storyline. Such storylines help to preserve the semantic structure and logical thinking process of a scientific paper. Semantic structures, such as scientific concepts and comparative sentences, are extracted using existing named entity recognition APIs and supervised classifiers, from a scientific paper automatically. Two supplementary views, ranked entity frequency view and entity co-occurrence network view, are provided to help users identify the "main plot" of such scientific storylines. When collective documents are ready, LitStoryTeller also provides a temporal entity evolution view and entity community view for collection digestion.

cs.HC↗

arXiv2017

Video Highlights Detection and Summarization with Lag-Calibration based on Concept-Emotion Mapping of Crowd-sourced Time-Sync Comments

With the prevalence of video sharing, there are increasing demands for automatic video digestion such as highlight detection. Recently, platforms with crowdsourced time-sync video comments have emerged worldwide, providing a good opportunity for highlight detection. However, this task is non-trivial: (1) time-sync comments often lag behind their corresponding shot; (2) time-sync comments are semantically sparse and noisy; (3) to determine which shots are highlights is highly subjective. The present paper aims to tackle these challenges by proposing a framework that (1) uses concept-mapped lexical-chains for lag calibration; (2) models video highlights based on comment intensity and combination of emotion and concept concentration of each shot; (3) summarize each detected highlight using improved SumBasic with emotion and concept mapping. Experiments on large real-world datasets show that our highlight detection method and summarization method both outperform other benchmarks with considerable margins.

cs.CL↗

arXiv2016

Grand Challenges in Measuring and Characterizing Scholarly Impact

The constantly growing body of scholarly knowledge of science, technology, and humanities is an asset of the mankind. While new discoveries expand the existing knowledge, they may simultaneously render some of it obsolete. It is crucial for scientists and other stakeholders to keep their knowledge up to date. Policy makers, decision makers, and the general public also need an efficient communication of scientific knowledge. Several grand challenges concerning the creation, adaptation, and diffusion of scholarly knowledge, and advance quantitative and qualitative approaches to the study of scholarly knowledge are identified.

cs.DL↗

arXiv2013

Interactive Overlays of Journals and the Measurement of Interdisciplinarity on the basis of Aggregated Journal-Journal Citations

Using "Analyze Results" at the Web of Science, one can directly generate overlays onto global journal maps of science. The maps are based on the 10,000+ journals contained in the Journal Citation Reports (JCR) of the Science and Social Science Citation Indices (2011). The disciplinary diversity of the retrieval is measured in terms of Rao-Stirling's "quadratic entropy." Since this indicator of interdisciplinarity is normalized between zero and one, the interdisciplinarity can be compared among document sets and across years, cited or citing. The colors used for the overlays are based on Blondel et al.'s (2008) community-finding algorithms operating on the relations journals included in JCRs. The results can be exported from VOSViewer with different options such as proportional labels, heat maps, or cluster density maps. The maps can also be web-started and/or animated (e.g., using PowerPoint). The "citing" dimension of the aggregated journal-journal citation matrix was found to provide a more comprehensive description than the matrix based on the cited archive. The relations between local and global maps and their different functions in studying the sciences in terms of journal litteratures are further discussed: local and global maps are based on different assumptions and can be expected to serve different purposes for the explanation.

cs.DL↗

arXiv2011

The Use of Scientific Data: A Content Analysis

Nowadays, science has been coming into a new paradigm, called data-intensive science. While current studies of the new phenomenon focused on building up infrastructure for this new paradigm, yet a few studies concern users of scientific data, particularly their usage practices in the newly emerging paradigm, even though the importance of understanding users' work flow and practices has been summoned. This study endeavors to improve our understanding of users' data usage behavior through a content analysis of publications in a frequently cited new paradigm-related project, Sloan Digital Sky Survey (SDSS). We found that (1) nearly half studies used one data source only. A few studies exploited three or more data sources; (2) the number of objects that were analyzed in SDSS publications is in all scales from one digit to millions; (3) different paper types may affect the data usage patterns; (4) Users are not only consumers of scientific data. They are producers too; (5) studies that can use multiple large scale data sources are relative rare. Issues of data provenance, trust, and usability may prevent researchers from doing this kind of research.

astro-ph.IM↗

arXiv2010

The Structure and Dynamics of Co-Citation Clusters: A Multiple-Perspective Co-Citation Analysis

A multiple-perspective co-citation analysis method is introduced for characterizing and interpreting the structure and dynamics of co-citation clusters. The method facilitates analytic and sense making tasks by integrating network visualization, spectral clustering, automatic cluster labeling, and text summarization. Co-citation networks are decomposed into co-citation clusters. The interpretation of these clusters is augmented by automatic cluster labeling and summarization. The method focuses on the interrelations between a co-citation cluster's members and their citers. The generic method is applied to a three-part analysis of the field of Information Science as defined by 12 journals published between 1996 and 2008: 1) a comparative author co-citation analysis (ACA), 2) a progressive ACA of a time series of co-citation networks, and 3) a progressive document co-citation analysis (DCA). Results show that the multiple-perspective method increases the interpretability and accountability of both ACA and DCA networks.

cs.CY↗

arXiv2010

Making Sense of the Evolution of a Scientific Domain: A Visual Analytic Study of the Sloan Digital Sky Survey Research

We introduce a new visual analytic approach to the study of scientific discoveries and knowledge diffusion. Our approach enhances contemporary co-citation network analysis by enabling analysts to identify co-citation clusters of cited references intuitively, synthesize thematic contexts in which these clusters are cited, and trace how research focus evolves over time. The new approach integrates and streamlines a few previously isolated techniques such as spectral clustering and feature selection algorithms. The integrative procedure is expected to empower and strengthen analytical and sense making capabilities of scientists, learners, and researchers to understand the dynamics of the evolution of scientific domains in a wide range of scientific fields, science studies, and science policy evaluation and planning. We demonstrate the potential of our approach through a visual analysis of the evolution of astronomical research associated with the Sloan Digital Sky Survey (SDSS) using bibliographic data between 1994 and 2008. In addition, we also demonstrate that the approach can be consistently applied to a set of heterogeneous data sources such as e-prints on arXiv, publications on ADS, and NSF awards related to the same topic of SDSS.

cs.GL↗

arXiv2010

Collaboration in an Open Data eScience: A Case Study of Sloan Digital Sky Survey

Current science and technology has produced more and more publically accessible scientific data. However, little is known about how the open data trend impacts a scientific community, specifically in terms of its collaboration behaviors. This paper aims to enhance our understanding of the dynamics of scientific collaboration in the open data eScience environment via a case study of co-author networks of an active and highly cited open data project, called Sloan Digital Sky Survey. We visualized the co-authoring networks and measured their properties over time at three levels: author, institution, and country levels. We compared these measurements to a random network model and also compared results across the three levels. The study found that 1) the collaboration networks of the SDSS community transformed from random networks to small-world networks; 2) the number of author-level collaboration instances has not changed much over time, while the number of collaboration instances at the other two levels has increased over time; 3) pairwise institutional collaboration become common in recent years. The open data trend may have both positive and negative impacts on scientific collaboration.

cs.DL↗

arXiv2009

Towards an explanatory and computational theory of scientific discovery

We propose an explanatory and computational theory of transformative discoveries in science. The theory is derived from a recurring theme found in a diverse range of scientific change, scientific discovery, and knowledge diffusion theories in philosophy of science, sociology of science, social network analysis, and information science. The theory extends the concept of structural holes from social networks to a broader range of associative networks found in science studies, especially including networks that reflect underlying intellectual structures such as co-citation networks and collaboration networks. The central premise is that connecting otherwise disparate patches of knowledge is a valuable mechanism of creative thinking in general and transformative scientific discovery in particular.

cs.GL↗