arXiv subjects

Chaowei Fang

Publications and source records attributed to Chaowei Fang.

At least 37 records · Page 2Linked to original sources

arXiv2022

Combating Noisy Labels in Long-Tailed Image Classification

Most existing methods that cope with noisy labels usually assume that the class distributions are well balanced, which has insufficient capacity to deal with the practical scenarios where training samples have imbalanced distributions. To this end, this paper makes an early effort to tackle the image classification task with both long-tailed distribution and label noise. Existing noise-robust learning methods cannot work in this scenario as it is challenging to differentiate noisy samples from clean samples of tail classes. To deal with this problem, we propose a new learning paradigm based on matching between inferences on weak and strong data augmentations to screen out noisy samples and introduce a leave-noise-out regularization to eliminate the effect of the recognized noisy samples. Furthermore, we incorporate a novel prediction penalty based on online prior distribution to avoid bias towards head classes. This mechanism has superiority in capturing the class fitting degree in realtime compared to the existing long-tail classification methods. Exhaustive experiments demonstrate that the proposed method outperforms state-of-the-art algorithms that address the distribution imbalance problem in long-tailed classification under noisy labels.

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arXiv2022

Deep 3D Vessel Segmentation based on Cross Transformer Network

The coronary microvascular disease poses a great threat to human health. Computer-aided analysis/diagnosis systems help physicians intervene in the disease at early stages, where 3D vessel segmentation is a fundamental step. However, there is a lack of carefully annotated dataset to support algorithm development and evaluation. On the other hand, the commonly-used U-Net structures often yield disconnected and inaccurate segmentation results, especially for small vessel structures. In this paper, motivated by the data scarcity, we first construct two large-scale vessel segmentation datasets consisting of 100 and 500 computed tomography (CT) volumes with pixel-level annotations by experienced radiologists. To enhance the U-Net, we further propose the cross transformer network (CTN) for fine-grained vessel segmentation. In CTN, a transformer module is constructed in parallel to a U-Net to learn long-distance dependencies between different anatomical regions; and these dependencies are communicated to the U-Net at multiple stages to endow it with global awareness. Experimental results on the two in-house datasets indicate that this hybrid model alleviates unexpected disconnections by considering topological information across regions. Our codes, together with the trained models are made publicly available at https://github.com/qibaolian/ctn.

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arXiv2022

Incremental Cross-view Mutual Distillation for Self-supervised Medical CT Synthesis

Due to the constraints of the imaging device and high cost in operation time, computer tomography (CT) scans are usually acquired with low intra-slice resolution. Improving the intra-slice resolution is beneficial to the disease diagnosis for both human experts and computer-aided systems. To this end, this paper builds a novel medical slice synthesis to increase the between-slice resolution. Considering that the ground-truth intermediate medical slices are always absent in clinical practice, we introduce the incremental cross-view mutual distillation strategy to accomplish this task in the self-supervised learning manner. Specifically, we model this problem from three different views: slice-wise interpolation from axial view and pixel-wise interpolation from coronal and sagittal views. Under this circumstance, the models learned from different views can distill valuable knowledge to guide the learning processes of each other. We can repeat this process to make the models synthesize intermediate slice data with increasing inter-slice resolution. To demonstrate the effectiveness of the proposed approach, we conduct comprehensive experiments on a large-scale CT dataset. Quantitative and qualitative comparison results show that our method outperforms state-of-the-art algorithms by clear margins.

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arXiv2022

Cross-Modality High-Frequency Transformer for MR Image Super-Resolution

Improving the resolution of magnetic resonance (MR) image data is critical to computer-aided diagnosis and brain function analysis. Higher resolution helps to capture more detailed content, but typically induces to lower signal-to-noise ratio and longer scanning time. To this end, MR image super-resolution has become a widely-interested topic in recent times. Existing works establish extensive deep models with the conventional architectures based on convolutional neural networks (CNN). In this work, to further advance this research field, we make an early effort to build a Transformer-based MR image super-resolution framework, with careful designs on exploring valuable domain prior knowledge. Specifically, we consider two-fold domain priors including the high-frequency structure prior and the inter-modality context prior, and establish a novel Transformer architecture, called Cross-modality high-frequency Transformer (Cohf-T), to introduce such priors into super-resolving the low-resolution (LR) MR images. Experiments on two datasets indicate that Cohf-T achieves new state-of-the-art performance.

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arXiv2022

Computer-aided Tuberculosis Diagnosis with Attribute Reasoning Assistance

Although deep learning algorithms have been intensively developed for computer-aided tuberculosis diagnosis (CTD), they mainly depend on carefully annotated datasets, leading to much time and resource consumption. Weakly supervised learning (WSL), which leverages coarse-grained labels to accomplish fine-grained tasks, has the potential to solve this problem. In this paper, we first propose a new large-scale tuberculosis (TB) chest X-ray dataset, namely the tuberculosis chest X-ray attribute dataset (TBX-Att), and then establish an attribute-assisted weakly-supervised framework to classify and localize TB by leveraging the attribute information to overcome the insufficiency of supervision in WSL scenarios. Specifically, first, the TBX-Att dataset contains 2000 X-ray images with seven kinds of attributes for TB relational reasoning, which are annotated by experienced radiologists. It also includes the public TBX11K dataset with 11200 X-ray images to facilitate weakly supervised detection. Second, we exploit a multi-scale feature interaction model for TB area classification and detection with attribute relational reasoning. The proposed model is evaluated on the TBX-Att dataset and will serve as a solid baseline for future research. The code and data will be available at https://github.com/GangmingZhao/tb-attribute-weak-localization.

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arXiv2022

Weakly Supervised Semantic Segmentation via Alternative Self-Dual Teaching

Current weakly supervised semantic segmentation (WSSS) frameworks usually contain the separated mask-refinement model and the main semantic region mining model. These approaches would contain redundant feature extraction backbones and biased learning objectives, making them computational complex yet sub-optimal to addressing the WSSS task. To solve this problem, this paper establishes a compact learning framework that embeds the classification and mask-refinement components into a unified deep model. With the shared feature extraction backbone, our model is able to facilitate knowledge sharing between the two components while preserving a low computational complexity. To encourage high-quality knowledge interaction, we propose a novel alternative self-dual teaching (ASDT) mechanism. Unlike the conventional distillation strategy, the knowledge of the two teacher branches in our model is alternatively distilled to the student branch by a Pulse Width Modulation (PWM), which generates PW wave-like selection signal to guide the knowledge distillation process. In this way, the student branch can help prevent the model from falling into local minimum solutions caused by the imperfect knowledge provided of either teacher branch. Comprehensive experiments on the PASCAL VOC 2012 and COCO-Stuff 10K demonstrate the effectiveness of the proposed alternative self-dual teaching mechanism as well as the new state-of-the-art performance of our approach.

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arXiv2022

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image Segmentation

Semi-supervised learning (SSL), which aims at leveraging a few labeled images and a large number of unlabeled images for network training, is beneficial for relieving the burden of data annotation in medical image segmentation. According to the experience of medical imaging experts, local attributes such as texture, luster and smoothness are very important factors for identifying target objects like lesions and polyps in medical images. Motivated by this, we propose a cross-level contrastive learning scheme to enhance representation capacity for local features in semi-supervised medical image segmentation. Compared to existing image-wise, patch-wise and point-wise contrastive learning algorithms, our devised method is capable of exploring more complex similarity cues, namely the relational characteristics between global and local patch-wise representations. Additionally, for fully making use of cross-level semantic relations, we devise a novel consistency constraint that compares the predictions of patches against those of the full image. With the help of the cross-level contrastive learning and consistency constraint, the unlabelled data can be effectively explored to improve segmentation performance on two medical image datasets for polyp and skin lesion segmentation respectively. Code of our approach is available.

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arXiv2021

MVCNet: Multiview Contrastive Network for Unsupervised Representation Learning for 3D CT Lesions

\emph{Objective and Impact Statement}. With the renaissance of deep learning, automatic diagnostic systems for computed tomography (CT) have achieved many successful applications. However, they are mostly attributed to careful expert annotations, which are often scarce in practice. This drives our interest to the unsupervised representation learning. \emph{Introduction}. Recent studies have shown that self-supervised learning is an effective approach for learning representations, but most of them rely on the empirical design of transformations and pretext tasks. \emph{Methods}. To avoid the subjectivity associated with these methods, we propose the MVCNet, a novel unsupervised three dimensional (3D) representation learning method working in a transformation-free manner. We view each 3D lesion from different orientations to collect multiple two dimensional (2D) views. Then, an embedding function is learned by minimizing a contrastive loss so that the 2D views of the same 3D lesion are aggregated, and the 2D views of different lesions are separated. We evaluate the representations by training a simple classification head upon the embedding layer. \emph{Results}. Experimental results show that MVCNet achieves state-of-the-art accuracies on the LIDC-IDRI (89.55\%), LNDb (77.69\%) and TianChi (79.96\%) datasets for \emph{unsupervised representation learning}. When fine-tuned on 10\% of the labeled data, the accuracies are comparable to the supervised learning model (89.46\% vs. 85.03\%, 73.85\% vs. 73.44\%, 83.56\% vs. 83.34\% on the three datasets, respectively). \emph{Conclusion}. Results indicate the superiority of MVCNet in \emph{learning representations with limited annotations}.

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arXiv2021

Trash to Treasure: Harvesting OOD Data with Cross-Modal Matching for Open-Set Semi-Supervised Learning

Open-set semi-supervised learning (open-set SSL) investigates a challenging but practical scenario where out-of-distribution (OOD) samples are contained in the unlabeled data. While the mainstream technique seeks to completely filter out the OOD samples for semi-supervised learning (SSL), we propose a novel training mechanism that could effectively exploit the presence of OOD data for enhanced feature learning while avoiding its adverse impact on the SSL. We achieve this goal by first introducing a warm-up training that leverages all the unlabeled data, including both the in-distribution (ID) and OOD samples. Specifically, we perform a pretext task that enforces our feature extractor to obtain a high-level semantic understanding of the training images, leading to more discriminative features that can benefit the downstream tasks. Since the OOD samples are inevitably detrimental to SSL, we propose a novel cross-modal matching strategy to detect OOD samples. Instead of directly applying binary classification, we train the network to predict whether the data sample is matched to an assigned one-hot class label. The appeal of the proposed cross-modal matching over binary classification is the ability to generate a compatible feature space that aligns with the core classification task. Extensive experiments show that our approach substantially lifts the performance on open-set SSL and outperforms the state-of-the-art by a large margin.

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arXiv2021

Deep Transformers for Fast Small Intestine Grounding in Capsule Endoscope Video

Capsule endoscopy is an evolutional technique for examining and diagnosing intractable gastrointestinal diseases. Because of the huge amount of data, analyzing capsule endoscope videos is very time-consuming and labor-intensive for gastrointestinal medicalists. The development of intelligent long video analysis algorithms for regional positioning and analysis of capsule endoscopic video is therefore essential to reduce the workload of clinicians and assist in improving the accuracy of disease diagnosis. In this paper, we propose a deep model to ground shooting range of small intestine from a capsule endoscope video which has duration of tens of hours. This is the first attempt to attack the small intestine grounding task using deep neural network method. We model the task as a 3-way classification problem, in which every video frame is categorized into esophagus/stomach, small intestine or colorectum. To explore long-range temporal dependency, a transformer module is built to fuse features of multiple neighboring frames. Based on the classification model, we devise an efficient search algorithm to efficiently locate the starting and ending shooting boundaries of the small intestine. Without searching the small intestine exhaustively in the full video, our method is implemented via iteratively separating the video segment along the direction to the target boundary in the middle. We collect 113 videos from a local hospital to validate our method. In the 5-fold cross validation, the average IoU between the small intestine segments located by our method and the ground-truths annotated by broad-certificated gastroenterologists reaches 0.945.

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arXiv2021

Densely Nested Top-Down Flows for Salient Object Detection

With the goal of identifying pixel-wise salient object regions from each input image, salient object detection (SOD) has been receiving great attention in recent years. One kind of mainstream SOD methods is formed by a bottom-up feature encoding procedure and a top-down information decoding procedure. While numerous approaches have explored the bottom-up feature extraction for this task, the design on top-down flows still remains under-studied. To this end, this paper revisits the role of top-down modeling in salient object detection and designs a novel densely nested top-down flows (DNTDF)-based framework. In every stage of DNTDF, features from higher levels are read in via the progressive compression shortcut paths (PCSP). The notable characteristics of our proposed method are as follows. 1) The propagation of high-level features which usually have relatively strong semantic information is enhanced in the decoding procedure; 2) With the help of PCSP, the gradient vanishing issues caused by non-linear operations in top-down information flows can be alleviated; 3) Thanks to the full exploration of high-level features, the decoding process of our method is relatively memory efficient compared against those of existing methods. Integrating DNTDF with EfficientNet, we construct a highly light-weighted SOD model, with very low computational complexity. To demonstrate the effectiveness of the proposed model, comprehensive experiments are conducted on six widely-used benchmark datasets. The comparisons to the most state-of-the-art methods as well as the carefully-designed baseline models verify our insights on the top-down flow modeling for SOD. The code of this paper is available at https://github.com/new-stone-object/DNTD.

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arXiv2020

Contralaterally Enhanced Networks for Thoracic Disease Detection

Identifying and locating diseases in chest X-rays are very challenging, due to the low visual contrast between normal and abnormal regions, and distortions caused by other overlapping tissues. An interesting phenomenon is that there exist many similar structures in the left and right parts of the chest, such as ribs, lung fields and bronchial tubes. This kind of similarities can be used to identify diseases in chest X-rays, according to the experience of broad-certificated radiologists. Aimed at improving the performance of existing detection methods, we propose a deep end-to-end module to exploit the contralateral context information for enhancing feature representations of disease proposals. First of all, under the guidance of the spine line, the spatial transformer network is employed to extract local contralateral patches, which can provide valuable context information for disease proposals. Then, we build up a specific module, based on both additive and subtractive operations, to fuse the features of the disease proposal and the contralateral patch. Our method can be integrated into both fully and weakly supervised disease detection frameworks. It achieves 33.17 AP50 on a carefully annotated private chest X-ray dataset which contains 31,000 images. Experiments on the NIH chest X-ray dataset indicate that our method achieves state-of-the-art performance in weakly-supervised disease localization.

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arXiv2020

A Single Frame and Multi-Frame Joint Network for 360-degree Panorama Video Super-Resolution

Spherical videos, also known as \ang{360} (panorama) videos, can be viewed with various virtual reality devices such as computers and head-mounted displays. They attract large amount of interest since awesome immersion can be experienced when watching spherical videos. However, capturing, storing and transmitting high-resolution spherical videos are extremely expensive. In this paper, we propose a novel single frame and multi-frame joint network (SMFN) for recovering high-resolution spherical videos from low-resolution inputs. To take advantage of pixel-level inter-frame consistency, deformable convolutions are used to eliminate the motion difference between feature maps of the target frame and its neighboring frames. A mixed attention mechanism is devised to enhance the feature representation capability. The dual learning strategy is exerted to constrain the space of solution so that a better solution can be found. A novel loss function based on the weighted mean square error is proposed to emphasize on the super-resolution of the equatorial regions. This is the first attempt to settle the super-resolution of spherical videos, and we collect a novel dataset from the Internet, MiG Panorama Video, which includes 204 videos. Experimental results on 4 representative video clips demonstrate the efficacy of the proposed method. The dataset and code are available at https://github.com/lovepiano/SMFN_For_360VSR.

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arXiv2020

PNEN: Pyramid Non-Local Enhanced Networks

Existing neural networks proposed for low-level image processing tasks are usually implemented by stacking convolution layers with limited kernel size. Every convolution layer merely involves in context information from a small local neighborhood. More contextual features can be explored as more convolution layers are adopted. However it is difficult and costly to take full advantage of long-range dependencies. We propose a novel non-local module, Pyramid Non-local Block, to build up connection between every pixel and all remain pixels. The proposed module is capable of efficiently exploiting pairwise dependencies between different scales of low-level structures. The target is fulfilled through first learning a query feature map with full resolution and a pyramid of reference feature maps with downscaled resolutions. Then correlations with multi-scale reference features are exploited for enhancing pixel-level feature representation. The calculation procedure is economical considering memory consumption and computational cost. Based on the proposed module, we devise a Pyramid Non-local Enhanced Networks for edge-preserving image smoothing which achieves state-of-the-art performance in imitating three classical image smoothing algorithms. Additionally, the pyramid non-local block can be directly incorporated into convolution neural networks for other image restoration tasks. We integrate it into two existing methods for image denoising and single image super-resolution, achieving consistently improved performance.

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arXiv2020

Graph Neural Networks for UnsupervisedDomain Adaptation of Histopathological ImageAnalytics

Annotating histopathological images is a time-consuming andlabor-intensive process, which requires broad-certificated pathologistscarefully examining large-scale whole-slide images from cells to tissues.Recent frontiers of transfer learning techniques have been widely investi-gated for image understanding tasks with limited annotations. However,when applied for the analytics of histology images, few of them can effec-tively avoid the performance degradation caused by the domain discrep-ancy between the source training dataset and the target dataset, suchas different tissues, staining appearances, and imaging devices. To thisend, we present a novel method for the unsupervised domain adaptationin histopathological image analysis, based on a backbone for embeddinginput images into a feature space, and a graph neural layer for propa-gating the supervision signals of images with labels. The graph model isset up by connecting every image with its close neighbors in the embed-ded feature space. Then graph neural network is employed to synthesizenew feature representation from every image. During the training stage,target samples with confident inferences are dynamically allocated withpseudo labels. The cross-entropy loss function is used to constrain thepredictions of source samples with manually marked labels and targetsamples with pseudo labels. Furthermore, the maximum mean diversityis adopted to facilitate the extraction of domain-invariant feature repre-sentations, and contrastive learning is exploited to enhance the categorydiscrimination of learned features. In experiments of the unsupervised do-main adaptation for histopathological image classification, our methodachieves state-of-the-art performance on four public datasets

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arXiv2020

Meta Corrupted Pixels Mining for Medical Image Segmentation

Deep neural networks have achieved satisfactory performance in piles of medical image analysis tasks. However the training of deep neural network requires a large amount of samples with high-quality annotations. In medical image segmentation, it is very laborious and expensive to acquire precise pixel-level annotations. Aiming at training deep segmentation models on datasets with probably corrupted annotations, we propose a novel Meta Corrupted Pixels Mining (MCPM) method based on a simple meta mask network. Our method is targeted at automatically estimate a weighting map to evaluate the importance of every pixel in the learning of segmentation network. The meta mask network which regards the loss value map of the predicted segmentation results as input, is capable of identifying out corrupted layers and allocating small weights to them. An alternative algorithm is adopted to train the segmentation network and the meta mask network, simultaneously. Extensive experimental results on LIDC-IDRI and LiTS datasets show that our method outperforms state-of-the-art approaches which are devised for coping with corrupted annotations.

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arXiv2019

Globally Guided Progressive Fusion Network for 3D Pancreas Segmentation

Recently 3D volumetric organ segmentation attracts much research interest in medical image analysis due to its significance in computer aided diagnosis. This paper aims to address the pancreas segmentation task in 3D computed tomography volumes. We propose a novel end-to-end network, Globally Guided Progressive Fusion Network, as an effective and efficient solution to volumetric segmentation, which involves both global features and complicated 3D geometric information. A progressive fusion network is devised to extract 3D information from a moderate number of neighboring slices and predict a probability map for the segmentation of each slice. An independent branch for excavating global features from downsampled slices is further integrated into the network. Extensive experimental results demonstrate that our method achieves state-of-the-art performance on two pancreas datasets.

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arXiv2019

Self-Enhanced Convolutional Network for Facial Video Hallucination

As a domain-specific super-resolution problem, facial image hallucination has enjoyed a series of breakthroughs thanks to the advances of deep convolutional neural networks. However, the direct migration of existing methods to video is still difficult to achieve good performance due to its lack of alignment and consistency modelling in temporal domain. Taking advantage of high inter-frame dependency in videos, we propose a self-enhanced convolutional network for facial video hallucination. It is implemented by making full usage of preceding super-resolved frames and a temporal window of adjacent low-resolution frames. Specifically, the algorithm first obtains the initial high-resolution inference of each frame by taking into consideration a sequence of consecutive low-resolution inputs through temporal consistency modelling. It further recurrently exploits the reconstructed results and intermediate features of a sequence of preceding frames to improve the initial super-resolution of the current frame by modelling the coherence of structural facial features across frames. Quantitative and qualitative evaluations demonstrate the superiority of the proposed algorithm against state-of-the-art methods. Moreover, our algorithm also achieves excellent performance in the task of general video super-resolution in a single-shot setting.

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