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Charles-Antoine Collins-Fekete

Publications and source records attributed to Charles-Antoine Collins-Fekete.

6 recordsLinked to original sources

Mitosis Detection in the Wild: Multi-Tumor and Context-Aware Generalization in the MIDOG 2025 Challenge

Automated mitosis detection is a well-established task in computational pathology. While previous benchmarks focused on scanner-induced domain shift, clinical "real-world" application requires models to be robust across the vast variance to be expected in the histological landscape. The MItosis DOmain Generalization (MIDOG) 2025 challenge was designed to evaluate algorithmic performance across unprecedented biological and contextual diversity. We curated a test dataset of 365 cases, encompassing 12 distinct human, canine and feline tumor types, digitized across multiple scanning platforms. Moving beyond hand-selected hotspots, the challenge required detection also in random tissue areas (representative of the whole slide detection situation) and challenging areas (areas rich in hard negatives). In the second track, we introduced the classification of atypical mitotic figures (AMFs). There were 18 teams submitting to the detection track, with F1 scores ranging up to 0.740. In the AMF detection track, we had 21 submissions with balanced accuracy values up to 0.908. Our analysis reveals that while most models perform reliably in traditional hotspots, significant performance degradation occurs in challenging ROIs, where false positive rates tripled. Furthermore, performance varied significantly across the 12 tumor types, highlighting "blind spots" in current state-of-the-art architectures when encountering rare or highly pleomorphic malignancies. Moreover, we evaluated the effectiveness of ensembling and found a mean increases of 1.5 and 1.3 percentage points in F1 score and balanced accuracy, respectively. In contrast, TTA showed no relevant improvement. MIDOG 2025 demonstrates that "in the wild" mitosis detection remains a significant hurdle. The transition from hotspot-only evaluation to a multi-contextual framework provides a more realistic proxy for clinical reliability.

cs.CV↗

Mixed Ion Beams Enable Simultaneous Treatment and Real-Time Imaging in Carbon Ion Therapy

Carbon ion therapy is one of the most advanced forms of radiotherapy, promising improved efficacy against resistant cancers. However, the high precision offered by the carbon ion Bragg peak requires precise knowledge of the beam range inside the patient. We report the first experimental realization of range monitoring and portal imaging with a mixed ion beam, where carbon ions are treating the tumor while helium ions simultaneously accelerated to the same velocity fully traverse the patient and provide treatment feedback. Using the GSI synchrotron, a beam of 12C3+ and 4He1+ ions is accelerated, exploiting their nearly identical charge-to-mass ratios. Stable extraction with controlled helium fractions down to 7% is demonstrated. Beam characterization reveals that the helium ion Bragg peak can be cleanly separated from the carbon ion fragment background which enables accurate detection of sub-millimeter Bragg peak displacements. Mixed-beam radiographs of a lung-cancer-like phantom offer target position detection to better than 0.5 mm accuracy. This establishes mixed beams as a powerful modality for real-time image guidance in carbon ion therapy, uniquely providing simultaneous treatment delivery, range probing, and portal imaging. By overcoming range uncertainty inside the patient, mixed beams will enable to fully exploit the precision of carbon ion therapy.

physics.med-ph↗

Pan-Cancer mitotic figures detection and domain generalization: MIDOG 2025 Challenge

This report details our submission to the Mitotic Domain Generalization (MIDOG) 2025 challenge, which addresses the critical task of mitotic figure detection in histopathology for cancer prognostication. Following the "Bitter Lesson"\cite{sutton2019bitterlesson} principle that emphasizes data scale over algorithmic novelty, we have publicly released two new datasets to bolster training data for both conventional \cite{Shen2024framework} and atypical mitoses \cite{shen_2025_16780587}. Besides, we implement up-to-date training methodologies for both track and reach a Track-1 F1-Score of 0.8407 on our test set, as well as a Track-2 balanced accuracy of 0.9107 for atypical mitotic cell classification.

eess.IV↗

Immunocto: a massive immune cell database auto-generated for histopathology

With the advent of novel cancer treatment options such as immunotherapy, studying the tumour immune micro-environment (TIME) is crucial to inform on prognosis and understand potential response to therapeutic agents. A key approach to characterising the TIME may be through combining (1) digitised microscopic high-resolution optical images of hematoxylin and eosin (H&E) stained tissue sections obtained in routine histopathology examinations with (2) automated immune cell detection and classification methods. In this work, we introduce a workflow to automatically generate robust single cell contours and labels from dually stained tissue sections with H&E and multiplexed immunofluorescence (IF) markers. The approach harnesses the Segment Anything Model and requires minimal human intervention compared to existing single cell databases. With this methodology, we create Immunocto, a massive, multi-million automatically generated database of 6,848,454 human cells and objects, including 2,282,818 immune cells distributed across 4 subtypes: CD4$^+$ T cell lymphocytes, CD8$^+$ T cell lymphocytes, CD20$^+$ B cell lymphocytes, and CD68$^+$/CD163$^+$ macrophages. For each cell, we provide a 64$\times$64 pixels$^2$ H&E image at $\mathbf{40}\times$ magnification, along with a binary mask of the nucleus and a label. The database, which is made publicly available, can be used to train models to study the TIME on routine H&E slides. We show that deep learning models trained on Immunocto result in state-of-the-art performance for lymphocyte detection. The approach demonstrates the benefits of using matched H&E and IF data to generate robust databases for computational pathology applications.

q-bio.QM↗

Optimal particle type and projection number in multi-modality relative stopping power acquisition

Proton radiography combined with X-ray computed tomography (CT) has been proposed to obtain a patient-specific calibration curve and reduce range uncertainties in cancer treatment with charged particles. The main aim of this study was to identify the optimal charged particle for the generation of the radiographies and to determine the optimal number of projections necessary to obtain minimal range errors. Three charged particles were considered to generate the radiographies: proton (p-rad), helium ions (α-rad) and carbon ions (c-rad). The problem formulation was viewed as a least square optimization, argmin_x (||Ax -b||_2^2 ), where the projection matrix A represents the cumulative path crossed by each particle in each material, b is the charged particle list-mode radiography expressed as the crossed water equivalent thickness (WET) and x is the relative stopping power (RSP) map to be optimized. The charged particle radiographies were simulated using the Geant4 Monte Carlo (MC) toolkit and an anthropomorphic adult head phantom. A was determined by calculating the particles trajectory through the X-ray CT employing a convex hull detection combined with a cubic spline path. For all particle types, the impact of using multiple projections was assessed (from 1 to 6 projections). In this study, tissue segmentation methods were also investigated in terms of achievable accuracy. The best results (mean RSP error below 0.7% and range errors below 1 mm) were obtained for a-rad when 3 projections were used. The dose delivered to the phantom by a single α-rad was 8 \muGy, lower than the dose of X-ray radiography.

physics.med-ph↗

A theoretical framework to predict the most likely ion path in particle imaging

In this work, a generic rigorous Bayesian formalism is introduced to predict the most likely path of any ion crossing a medium between two detection points. The path is predicted based on a combination of the particle scattering in the material and measurements of its initial and final position, direction and energy. The path estimate's precision is compared to the Monte Carlo simulated path. Every ion from hydrogen to carbon is simulated in two scenarios to estimate the accuracy achievable: one where the range is fixed and one where the initial velocity is fixed. In the scenario where the range is kept constant, the maximal root-mean-square error between the estimated path and the Monte Carlo path drops significantly between the proton path estimate (0.50 mm) and the helium path estimate (0.18 mm), but less so up to the carbon path estimate (0.09 mm). In the scenario where the initial velocity is kept constant, helium have systematically the minimal root-mean-square error throughout the path. As a result, helium is found to be the optimal particle for ion imaging.

physics.med-ph↗