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Chee Yap

Publications and source records attributed to Chee Yap.

At least 19 recordsLinked to original sources

Taylor Tube Method for Validated IVP

We recently introduced a novel architecture for the design of validated IVP algorithms. This architecture forms the basis of our complete validated algorithm for IVP. A key subroutine in our algorithm is the \textbf{Euler Tube}: it gave a technique for refining end- and full-enclosures and is also key to deriving a complexity bound of our IVP solver. In this paper, we generalize it to \textbf{Taylor Tube} of degree $p\ge 1$. As expected, higher-degree Taylor Tubes improve accuracy. But surprisingly, our experiments show that it can also lead to an overall speedup when combined with bisection.

math.NA

Bivariate range functions with superior convergence order

Range functions are a fundamental tool for certified computations in geometric modeling, computer graphics, and robotics, but traditional range functions have only quadratic convergence order ($m=2$). For ``superior'' convergence order (i.e., $m>2$), we exploit the Cornelius--Lohner framework in order to introduce new bivariate range functions based on Taylor, Lagrange, and Hermite interpolation. In particular, we focus on practical range functions with cubic and quartic convergence order. We implemented them in Julia and provide experimental validation of their performance in terms of efficiency and efficacy.

math.NA

End Cover for Initial Value Problem: Complete Validated Algorithms with Complexity Analysis

We consider the first-order autonomous ordinary differential equation \[ \mathbf{x}' = \mathbf{f}(\mathbf{x}), \] where $\mathbf{f} : \mathbb{R}^n \to \mathbb{R}^n$ is locally Lipschitz. For a box $B_0 \subseteq \mathbb{R}^n$ and $h > 0$, we denote by $\mathrm{IVP}_{\mathbf{f}}(B_0,h)$ the set of solutions $\mathbf{x} : [0,h] \to \mathbb{R}^n$ satisfying \[ \mathbf{x}'(t) = \mathbf{f}(\mathbf{x}(t)), \qquad \mathbf{x}(0) \in B_0 . \] We present a complete validated algorithm for the following \emph{End Cover Problem}: given $(\mathbf{f}, B_0, \varepsilon, h)$, compute a finite set $\mathcal{C}$ of boxes such that \[ \mathrm{End}_{\mathbf{f}}(B_0,h) \;\subseteq\; \bigcup_{B \in \mathcal{C}} B \;\subseteq\; \mathrm{End}_{\mathbf{f}}(B_0,h) \oplus [-\varepsilon,\varepsilon]^n , \] where \[ \mathrm{End}_{\mathbf{f}}(B_0,h) = \left\{ \mathbf{x}(h) : \mathbf{x} \in \mathrm{IVP}_{\mathbf{f}}(B_0,h) \right\}. \] Moreover, we provide a complexity analysis of our algorithm and introduce a novel technique for computing the end cover $\mathcal{C}$ based on covering the boundary of $\mathrm{End}_{\mathbf{f}}(B_0,h)$. Finally, we present experimental results demonstrating the practicality of our approach.

cs.DS

Distortion Bounds of Subdivision Models for SO(3)

In the subdivision approach to robot path planning, we need to subdivide the configuration space of a robot into nice cells to perform various computations. For a rigid spatial robot, this configuration space is $SE(3)=\mathbb{R}^3\times SO(3)$. The subdivision of $\mathbb{R}^3$ is standard but so far, there are no global subdivision schemes for $SO(3)$. We recently introduced a representation for $SO(3)$ suitable for subdivision. This paper investigates the distortion of the natural metric on $SO(3)$ caused by our representation. The proper framework for this study lies in the Riemannian geometry of $SO(3)$, enabling us to obtain sharp distortion bounds.

cs.RO

A Novel Approach to the Initial Value Problem with a complete validated algorithm

We consider the first order autonomous differential equation (ODE) ${\bf x}'={\bf f}({\bf x})$ where ${\bf f}: {\mathbb R}^n\to{\mathbb R}^n$ is locally Lipschitz. For ${\bf x}_0\in{\mathbb R}^n$ and $h>0$, the initial value problem (IVP) for $({\bf f},{\bf x}_0,h)$ is to determine if there is a unique solution, i.e., a function ${\bf x}:[0,h]\to{\mathbb R}^n$ that satisfies the ODE with ${\bf x}(0)={\bf x}_0$. Write ${\bf x} ={\tt IVP}_{\bf f}({\bf x}_0,h)$ for this unique solution. We pose a corresponding computational problem, called the End Enclosure Problem: given $({\bf f},B_0,h,\varepsilon_0)$ where $B_0\subseteq{\mathbb R}^n$ is a box and $\varepsilon_0>0$, to compute a pair of non-empty boxes $(\underline{B}_0,B_1)$ such that $\underline{B}_0\subseteq B_0$, width of $B_1$ is $<\varepsilon_0$, and for all ${\bf x}_0\in \underline{B}_0$, ${\bf x}={\tt IVP}_{\bf f}({\bf x}_0,h)$ exists and ${\bf x}(h)\in B_1$. We provide a complete validated algorithm for this problem. Under the assumption (promise) that for all ${\bf x}_0\in B_0$, ${\tt IVP}_{\bf f}({\bf x}_0,h)$ exists, we prove the halting of our algorithm. This is the first halting algorithm for IVP problems in such a general setting. We also introduce novel techniques for subroutines such as StepA and StepB, and a scaffold datastructure to support our End Enclosure algorithm. Among the techniques are new ways refine full- and end-enclosures based on a {\bf radical transform} combined with logarithm norms. Our preliminary implementation and experiments show considerable promise, and compare well with current validated algorithms.

cs.SC

Theory and Explicit Design of a Path Planner for an SE(3) Robot

We consider path planning for a rigid spatial robot with 6 degrees of freedom (6 DOFs), moving amidst polyhedral obstacles. A correct, complete and practical path planner for such a robot has never been achieved, although this is widely recognized as a key challenge in robotics. This paper provides a complete "explicit" design, down to explicit geometric primitives that are easily implementable. Our design is within an algorithmic framework for path planners, called Soft Subdivision Search (SSS). The framework is based on the twin foundations of $\epsilon$-exactness and soft predicates, which are critical for rigorous numerical implementations. The practicality of SSS has been previously demonstrated for various robots including 5-DOF spatial robots. In this paper, we solve several significant technical challenges for SE(3) robots: (1) We first ensure the correct theory by proving a general form of the Fundamental Theorem of the SSS theory. We prove this within an axiomatic framework, thus making it easy for future applications of this theory. (2) One component of $SE(3) = R^3 \times SO(3)$ is the non-Euclidean space SO(3). We design a novel topologically correct data structure for SO(3). Using the concept of subdivision charts and atlases for SO(3), we can now carry out subdivision of SO(3). (3) The geometric problem of collision detection takes place in $R^3$, via the footprint map. Unlike sampling-based approaches, we must reason with the notion of footprints of configuration boxes, which is much harder to characterize. Exploiting the theory of soft predicates, we design suitable approximate footprints which, when combined with the highly effective feature-set technique, lead to soft predicates. (4) Finally, we make the underlying geometric computation "explicit", i.e., avoiding a general solver of polynomial systems, in order to allow a direct implementation.

cs.RO

Robust Parameter Estimation for Rational Ordinary Differential Equations

We present a new approach for estimating parameters in rational ODE models from given (measured) time series data. In typical existing approaches, an initial guess for the parameter values is made from a given search interval. Then, in a loop, the corresponding outputs are computed by solving the ODE numerically, followed by computing the error from the given time series data. If the error is small, the loop terminates and the parameter values are returned. Otherwise, heuristics/theories are used to possibly improve the guess and continue the loop. These approaches tend to be non-robust in the sense that their accuracy depend on the search interval and the true parameter values; furthermore, they cannot handle the case where the parameters are locally identifiable. In this paper, we propose a new approach, which does not suffer from the above non-robustness. In particular, it does not require making good initial guesses for the parameter values or specifying search intervals. Instead, it uses differential algebra, interpolation of the data using rational functions, and multivariate polynomial system solving. We also compare the performance of the resulting software with several other estimation software packages.

cs.MS

Complexity Analysis of Root Clustering for a Complex Polynomial

Let $F(z)$ be an arbitrary complex polynomial. We introduce the local root clustering problem, to compute a set of natural $\varepsilon$-clusters of roots of $F(z)$ in some box region $B_0$ in the complex plane. This may be viewed as an extension of the classical root isolation problem. Our contribution is two-fold: we provide an efficient certified subdivision algorithm for this problem, and we provide a bit-complexity analysis based on the local geometry of the root clusters. Our computational model assumes that arbitrarily good approximations of the coefficients of $F$ are provided by means of an oracle at the cost of reading the coefficients. Our algorithmic techniques come from a companion paper (Becker et al., 2018) and are based on the Pellet test, Graeffe and Newton iterations, and are independent of Sch\"onhage's splitting circle method. Our algorithm is relatively simple and promises to be efficient in practice.

cs.SC

Isotopic Arrangement of Simple Curves: an Exact Numerical Approach based on Subdivision

This paper presents the first purely numerical (i.e., non-algebraic) subdivision algorithm for the isotopic approximation of a simple arrangement of curves. The arrangement is "simple" in the sense that any three curves have no common intersection, any two curves intersect transversally, and each curve is non-singular. A curve is given as the zero set of an analytic function $f:\mathbb{R}^2\rightarrow \mathbb{R}^2$, and effective interval forms of $f, \frac{\partial{f}}{\partial{x}}, \frac{\partial{f}}{\partial{y}}$ are available. Our solution generalizes the isotopic curve approximation algorithms of Plantinga-Vegter (2004) and Lin-Yap (2009). We use certified numerical primitives based on interval methods. Such algorithms have many favorable properties: they are practical, easy to implement, suffer no implementation gaps, integrate topological with geometric computation, and have adaptive as well as local complexity. A version of this paper without the appendices appeared in Lien et al. (2014).

cs.CG

Soft Subdivision Motion Planning for Complex Planar Robots

The design and implementation of theoretically-sound robot motion planning algorithms is challenging. Within the framework of resolution-exact algorithms, it is possible to exploit soft predicates for collision detection. The design of soft predicates is a balancing act between easily implementable predicates and their accuracy/effectivity. In this paper, we focus on the class of planar polygonal rigid robots with arbitrarily complex geometry. We exploit the remarkable decomposability property of soft collision-detection predicates of such robots. We introduce a general technique to produce such a decomposition. If the robot is an m-gon, the complexity of this approach scales linearly in m. This contrasts with the O(m^3) complexity known for exact planners. It follows that we can now routinely produce soft predicates for any rigid polygonal robot. This results in resolution-exact planners for such robots within the general Soft Subdivision Search (SSS) framework. This is a significant advancement in the theory of sound and complete planners for planar robots. We implemented such decomposed predicates in our open-source Core Library. The experiments show that our algorithms are effective, perform in real time on non-trivial environments, and can outperform many sampling-based methods.

cs.CG

Effective Subdivision Algorithm for Isolating Zeros of Real Systems of Equations, with Complexity Analysis

We describe a new algorithm \texttt{Miranda} for isolating the simple zeros of a function $\boldsymbol{f}:{\mathbb R}^n\to{\mathbb R}^n$ within a box $B_0\subseteq {\mathbb R}^n$. The function $\boldsymbol{f}$ and its partial derivatives must have interval forms, but need not be polynomial. Our subdivision-based algorithm is "effective" in the sense that our algorithmic description also specifies the numerical precision hat is sufficient to certify an implementation with any standard BigFloat number type. The main predicate is the Moore-Kioustelides (MK) test, based on Miranda's Theorem (1940). Although the MK test is well-known, this paper appears to be the first synthesis of this test into a complete root isolation algorithm. We provide a complexity analysis of our algorithm based on intrinsic geometric parameters of the system. Our algorithm and complexity analysis are developed using 3 levels of description (Abstract, Interval, Effective). This methodology provides a systematic pathway for achieving effective subdivision algorithms in general.

math.NA

An Algorithmic Approach to Limit Cycles of Nonlinear Differential Systems: the Averaging Method Revisited

This paper introduces an algorithmic approach to the analysis of bifurcation of limit cycles from the centers of nonlinear continuous differential systems via the averaging method. We develop three algorithms to implement the averaging method. The first algorithm allows to transform the considered differential systems to the normal formal of averaging. Here, we restricted the unperturbed term of the normal form of averaging to be identically zero. The second algorithm is used to derive the computational formulae of the averaged functions at any order. The third algorithm is based on the first two algorithms that determines the exact expressions of the averaged functions for the considered differential systems. The proposed approach is implemented in Maple and its effectiveness is shown by several examples. Moreover, we report some incorrect results in published papers on the averaging method.

cs.SC

Rods and Rings: Soft Subdivision Planner for R^3 x S^2

We consider path planning for a rigid spatial robot moving amidst polyhedral obstacles. Our robot is either a rod or a ring. Being axially-symmetric, their configuration space is R^3 x S^2 with 5 degrees of freedom (DOF). Correct, complete and practical path planning for such robots is a long standing challenge in robotics. While the rod is one of the most widely studied spatial robots in path planning, the ring seems to be new, and a rare example of a non-simply-connected robot. This work provides rigorous and complete algorithms for these robots with theoretical guarantees. We implemented the algorithms in our open-source Core Library. Experiments show that they are practical, achieving near real-time performance. We compared our planner to state-of-the-art sampling planners in OMPL. Our subdivision path planner is based on the twin foundations of \epsilon-exactness and soft predicates. Correct implementation is relatively easy. The technical innovations include subdivision atlases for S^2, introduction of \Sigma_2 representations for footprints, and extensions of our feature-based technique for "opening up the blackbox of collision detection".

cs.CG

SIAN: software for structural identifiability analysis of ODE models

Biological processes are often modeled by ordinary differential equations with unknown parameters. The unknown parameters are usually estimated from experimental data. In some cases, due to the structure of the model, this estimation problem does not have a unique solution even in the case of continuous noise-free data. It is therefore desirable to check the uniqueness a priori before carrying out actual experiments. We present a new software SIAN (Structural Identifiability ANalyser) that does this. Our software can tackle problems that could not be tackled by previously developed packages.

cs.SC

Implementation of a Near-Optimal Complex Root Clustering Algorithm

We describe Ccluster, a software for computing natural $\epsilon$-clusters of complex roots in a given box of the complex plane. This algorithm from Becker et al.~(2016) is near-optimal when applied to the benchmark problem of isolating all complex roots of an integer polynomial. It is one of the first implementations of a near-optimal algorithm for complex roots. We describe some low level techniques for speeding up the algorithm. Its performance is compared with the well-known MPSolve library and Maple.

cs.MS

Clustering Complex Zeros of Triangular Systems of Polynomials

This paper gives the first algorithm for finding a set of natural $\epsilon$-clusters of complex zeros of a triangular system of polynomials within a given polybox in $\mathbb{C}^n$, for any given $\epsilon>0$. Our algorithm is based on a recent near-optimal algorithm of Becker et al (2016) for clustering the complex roots of a univariate polynomial where the coefficients are represented by number oracles. Our algorithm is numeric, certified and based on subdivision. We implemented it and compared it with two well-known homotopy solvers on various triangular systems. Our solver always gives correct answers, is often faster than the homotopy solver that often gives correct answers, and sometimes faster than the one that gives sometimes correct results.

cs.CG

Global Identifiability of Differential Models

Many real-world processes and phenomena are modeled using systems of ordinary differential equations with parameters. Given such a system, we say that a parameter is globally identifiable if it can be uniquely recovered from input and output data. The main contribution of this paper is to provide theory, an algorithm, and software for deciding global identifiability. First, we rigorously derive an algebraic criterion for global identifiability (this is an analytic property), which yields a deterministic algorithm. Second, we improve the efficiency by randomizing the algorithm while guaranteeing the probability of correctness. With our new algorithm, we can tackle problems that could not be tackled before. A software based on the algorithm (called SIAN) is available at https://github.com/pogudingleb/SIAN.

math.CA

Root-finding with Implicit Deflation

Functional iterations such as Newton's are a popular tool for polynomial root-finding. We consider realistic situation where some (e.g., better-conditioned) roots have already been approximated and where further computations is directed to approximation of the remaining roots. Such situation is also realistic for root-finding by means of subdivision. A natural approach of applying explicit deflation has been much studied and recently advanced by one of the authors of this paper, but presently we contribute to the alternative approach of applying implicit deflation, which we combine with mapping the variable and reversion of an input polynomial. We also show another unexplored direction for substantial further progress in this long and extensively studied area. Namely we dramatically increase their local efficiency by means of the incorporation of fast algorithms for multipoint polynomial evaluation and Fast Multipole Method.

math.NA