arXiv subjects

Chenghua Lin

Publications and source records attributed to Chenghua Lin.

At least 55 records · Page 3Linked to original sources

arXiv2025

R-GenIMA: Integrating Neuroimaging and Genetics with Interpretable Multimodal AI for Alzheimer's Disease Progression

Early detection of Alzheimer's disease (AD) requires models capable of integrating macro-scale neuroanatomical alterations with micro-scale genetic susceptibility, yet existing multimodal approaches struggle to align these heterogeneous signals. We introduce R-GenIMA, an interpretable multimodal large language model that couples a novel ROI-wise vision transformer with genetic prompting to jointly model structural MRI and single nucleotide polymorphisms (SNPs) variations. By representing each anatomically parcellated brain region as a visual token and encoding SNP profiles as structured text, the framework enables cross-modal attention that links regional atrophy patterns to underlying genetic factors. Applied to the ADNI cohort, R-GenIMA achieves state-of-the-art performance in four-way classification across normal cognition (NC), subjective memory concerns (SMC), mild cognitive impairment (MCI), and AD. Beyond predictive accuracy, the model yields biologically meaningful explanations by identifying stage-specific brain regions and gene signatures, as well as coherent ROI-Gene association patterns across the disease continuum. Attention-based attribution revealed genes consistently enriched for established GWAS-supported AD risk loci, including APOE, BIN1, CLU, and RBFOX1. Stage-resolved neuroanatomical signatures identified shared vulnerability hubs across disease stages alongside stage-specific patterns: striatal involvement in subjective decline, frontotemporal engagement during prodromal impairment, and consolidated multimodal network disruption in AD. These results demonstrate that interpretable multimodal AI can synthesize imaging and genetics to reveal mechanistic insights, providing a foundation for clinically deployable tools that enable earlier risk stratification and inform precision therapeutic strategies in Alzheimer's disease.

cs.LG↗

arXiv2025

From Code Foundation Models to Agents and Applications: A Comprehensive Survey and Practical Guide to Code Intelligence

Large language models (LLMs) have fundamentally transformed automated software development by enabling direct translation of natural language descriptions into functional code, driving commercial adoption through tools like Github Copilot (Microsoft), Cursor (Anysphere), Trae (ByteDance), and Claude Code (Anthropic). While the field has evolved dramatically from rule-based systems to Transformer-based architectures, achieving performance improvements from single-digit to over 95\% success rates on benchmarks like HumanEval. In this work, we provide a comprehensive synthesis and practical guide (a series of analytic and probing experiments) about code LLMs, systematically examining the complete model life cycle from data curation to post-training through advanced prompting paradigms, code pre-training, supervised fine-tuning, reinforcement learning, and autonomous coding agents. We analyze the code capability of the general LLMs (GPT-4, Claude, LLaMA) and code-specialized LLMs (StarCoder, Code LLaMA, DeepSeek-Coder, and QwenCoder), critically examining the techniques, design decisions, and trade-offs. Further, we articulate the research-practice gap between academic research (e.g., benchmarks and tasks) and real-world deployment (e.g., software-related code tasks), including code correctness, security, contextual awareness of large codebases, and integration with development workflows, and map promising research directions to practical needs. Last, we conduct a series of experiments to provide a comprehensive analysis of code pre-training, supervised fine-tuning, and reinforcement learning, covering scaling law, framework selection, hyperparameter sensitivity, model architectures, and dataset comparisons.

cs.SE↗

arXiv2025

ContrastScore: Towards Higher Quality, Less Biased, More Efficient Evaluation Metrics with Contrastive Evaluation

Evaluating the quality of generated text automatically remains a significant challenge. Conventional reference-based metrics have been shown to exhibit relatively weak correlation with human evaluations. Recent research advocates the use of large language models (LLMs) as source-based metrics for natural language generation (NLG) assessment. While promising, LLM-based metrics, particularly those using smaller models, still fall short in aligning with human judgments. In this work, we introduce ContrastScore, a contrastive evaluation metric designed to enable higher-quality, less biased, and more efficient assessment of generated text. We evaluate ContrastScore on two NLG tasks: machine translation and summarization. Experimental results show that ContrastScore consistently achieves stronger correlation with human judgments than both single-model and ensemble-based baselines. Notably, ContrastScore based on Qwen 3B and 0.5B even outperforms Qwen 7B, despite having only half as many parameters, demonstrating its efficiency. Furthermore, it effectively mitigates common evaluation biases such as length and likelihood preferences, resulting in more robust automatic evaluation.

cs.CL↗

arXiv2025

Seeing isn't Hearing: Benchmarking Vision Language Models at Interpreting Spectrograms

With the rise of Large Language Models (LLMs) and their vision-enabled counterparts (VLMs), numerous works have investigated their capabilities in tasks that fuse the modalities of vision and language. In this work, we benchmark the extent to which VLMs are able to act as highly-trained phoneticians, interpreting spectrograms and waveforms of speech. To do this, we synthesise a novel dataset containing 4k+ English words spoken in isolation alongside stylistically consistent spectrogram and waveform figures. We test the ability of VLMs to understand these representations of speech through a multiple-choice task whereby models must predict the correct phonemic or graphemic transcription of a spoken word when presented amongst 3 distractor transcriptions that have been selected based on their phonemic edit distance to the ground truth. We observe that both zero-shot and finetuned models rarely perform above chance, demonstrating the requirement for specific parametric knowledge of how to interpret such figures, rather than paired samples alone.

cs.CL↗

arXiv2025

Natural Language Generation

This article provides a brief overview of the field of Natural Language Generation. The term Natural Language Generation (NLG), in its broadest definition, refers to the study of systems that verbalize some form of information through natural language. That information could be stored in a large database or knowledge graph (in data-to-text applications), but NLG researchers may also study summarisation (text-to-text) or image captioning (image-to-text), for example. As a subfield of Natural Language Processing, NLG is closely related to other sub-disciplines such as Machine Translation (MT) and Dialog Systems. Some NLG researchers exclude MT from their definition of the field, since there is no content selection involved where the system has to determine what to say. Conversely, dialog systems do not typically fall under the header of Natural Language Generation since NLG is just one component of dialog systems (the others being Natural Language Understanding and Dialog Management). However, with the rise of Large Language Models (LLMs), different subfields of Natural Language Processing have converged on similar methodologies for the production of natural language and the evaluation of automatically generated text.

cs.CL↗

arXiv2025

DocMMIR: A Framework for Document Multi-modal Information Retrieval

The rapid advancement of unsupervised representation learning and large-scale pre-trained vision-language models has significantly improved cross-modal retrieval tasks. However, existing multi-modal information retrieval (MMIR) studies lack a comprehensive exploration of document-level retrieval and suffer from the absence of cross-domain datasets at this granularity. To address this limitation, we introduce DocMMIR, a novel multi-modal document retrieval framework designed explicitly to unify diverse document formats and domains, including Wikipedia articles, scientific papers (arXiv), and presentation slides, within a comprehensive retrieval scenario. We construct a large-scale cross-domain multimodal benchmark, comprising 450K samples, which systematically integrates textual and visual information. Our comprehensive experimental analysis reveals substantial limitations in current state-of-the-art MLLMs (CLIP, BLIP2, SigLIP-2, ALIGN) when applied to our tasks, with only CLIP demonstrating reasonable zero-shot performance. Furthermore, we conduct a systematic investigation of training strategies, including cross-modal fusion methods and loss functions, and develop a tailored approach to train CLIP on our benchmark. This results in a +31% improvement in MRR@10 compared to the zero-shot baseline. All our data and code are released in https://github.com/J1mL1/DocMMIR.

cs.IR↗

arXiv2025

Adversarial Defence without Adversarial Defence: Enhancing Language Model Robustness via Instance-level Principal Component Removal

Pre-trained language models (PLMs) have driven substantial progress in natural language processing but remain vulnerable to adversarial attacks, raising concerns about their robustness in real-world applications. Previous studies have sought to mitigate the impact of adversarial attacks by introducing adversarial perturbations into the training process, either implicitly or explicitly. While both strategies enhance robustness, they often incur high computational costs. In this work, we propose a simple yet effective add-on module that enhances the adversarial robustness of PLMs by removing instance-level principal components, without relying on conventional adversarial defences or perturbing the original training data. Our approach transforms the embedding space to approximate Gaussian properties, thereby reducing its susceptibility to adversarial perturbations while preserving semantic relationships. This transformation aligns embedding distributions in a way that minimises the impact of adversarial noise on decision boundaries, enhancing robustness without requiring adversarial examples or costly training-time augmentation. Evaluations on eight benchmark datasets show that our approach improves adversarial robustness while maintaining comparable before-attack accuracy to baselines, achieving a balanced trade-off between robustness and generalisation.

cs.CL↗

arXiv2025

Drivel-ology: Challenging LLMs with Interpreting Nonsense with Depth

We introduce Drivelology, a unique linguistic phenomenon characterised as "nonsense with depth" - utterances that are syntactically coherent yet pragmatically paradoxical, emotionally loaded, or rhetorically subversive. While such expressions may resemble surface-level nonsense, they encode implicit meaning requiring contextual inference, moral reasoning, or emotional interpretation. We find that current large language models (LLMs), despite excelling at many natural language processing (NLP) tasks, consistently fail to grasp the layered semantics of Drivelological text. To investigate this, we construct a benchmark dataset of over 1,200+ meticulously curated and diverse examples across English, Mandarin, Spanish, French, Japanese, and Korean. Each example underwent careful expert review to verify its Drivelological characteristics, involving multiple rounds of discussion and adjudication to address disagreements. Using this dataset, we evaluate a range of LLMs on classification, generation, and reasoning tasks. Our results reveal clear limitations of LLMs: models often confuse Drivelology with shallow nonsense, produce incoherent justifications, or miss implied rhetorical functions altogether. These findings highlight a deep representational gap in LLMs' pragmatic understanding and challenge the assumption that statistical fluency implies cognitive comprehension. We release our dataset and code to facilitate further research in modelling linguistic depth beyond surface-level coherence.

cs.CL↗

arXiv2025

COIG-Writer: A High-Quality Dataset for Chinese Creative Writing with Thought Processes

Large language models exhibit systematic deficiencies in creative writing, particularly in non-English contexts where training data is scarce and lacks process-level supervision. We present COIG-Writer, a novel Chinese creative writing dataset that captures both diverse outputs and their underlying thought processes through systematic reverse-engineering of high-quality texts. Unlike existing datasets that provide only input-output pairs, COIG-Writer comprises 1,665 meticulously curated triplets spanning 51 genres, each containing: (1) a reverse-engineered prompt, (2) detailed creative reasoning documenting decision-making processes, and (3) the final text. Through comprehensive experiments, we identify a two-component model of creative writing: narrative logic (provided by process supervision) and linguistic expression (maintained by general-purpose data). Our findings reveal three critical insights: (1) Process supervision is highly effective but requires stabilization with general data. A ratio of at least one creative sample to twelve general samples is needed to achieve optimal performance; below this threshold, the win rate progressively degrades (from 62.75% down to 35.78%)., (2) creative capabilities are culturally-bound with no cross-lingual transfer (89.26pp gap between Chinese and English performance), and (3) lexical diversity inversely correlates with creative quality (TTR paradox), suggesting high diversity signals compensatory behavior for logical deficiencies. These findings establish that creative excellence emerges from the interaction between logical scaffolding and linguistic grounding, analogous to how mathematical reasoning enhances but cannot replace linguistic competence in foundation models.

cs.CL↗

arXiv2025

Who's Laughing Now? An Overview of Computational Humour Generation and Explanation

The creation and perception of humour is a fundamental human trait, positioning its computational understanding as one of the most challenging tasks in natural language processing (NLP). As an abstract, creative, and frequently context-dependent construct, humour requires extensive reasoning to understand and create, making it a pertinent task for assessing the common-sense knowledge and reasoning abilities of modern large language models (LLMs). In this work, we survey the landscape of computational humour as it pertains to the generative tasks of creation and explanation. We observe that, despite the task of understanding humour bearing all the hallmarks of a foundational NLP task, work on generating and explaining humour beyond puns remains sparse, while state-of-the-art models continue to fall short of human capabilities. We bookend our literature survey by motivating the importance of computational humour processing as a subdiscipline of NLP and presenting an extensive discussion of future directions for research in the area that takes into account the subjective and ethically ambiguous nature of humour.

cs.CL↗

arXiv2025

Audio Contrastive-based Fine-tuning: Decoupling Representation Learning and Classification

Standard fine-tuning of pre-trained audio models couples representation learning with classifier training, which can obscure the true quality of the learned representations. In this work, we advocate for a disentangled two-stage framework that separates representation refinement from downstream evaluation. First, we employ a "contrastive-tuning" stage to explicitly improve the geometric structure of the model's embedding space. Subsequently, we introduce a dual-probe evaluation protocol to assess the quality of these refined representations from a geometric perspective. This protocol uses a linear probe to measure global linear separability and a k-Nearest Neighbours probe to investigate the local structure of class clusters. Our experiments on a diverse set of audio classification tasks show that our framework provides a better foundation for classification, leading to improved accuracy. Our newly proposed dual-probing framework acts as a powerful analytical lens, demonstrating why contrastive learning is more effective by revealing a superior embedding space. It significantly outperforms vanilla fine-tuning, particularly on single-label datasets with a large number of classes, and also surpasses strong baselines on multi-label tasks using a Jaccard-weighted loss. Our findings demonstrate that decoupling representation refinement from classifier training is a broadly effective strategy for unlocking the full potential of pre-trained audio models. Our code will be publicly available.

cs.SD↗

arXiv2025

Emphasising Structured Information: Integrating Abstract Meaning Representation into LLMs for Enhanced Open-Domain Dialogue Evaluation

Automatic open-domain dialogue evaluation has attracted increasing attention, yet remains challenging due to the complexity of assessing response appropriateness. Traditional evaluation metrics, typically trained with true positive and randomly selected negative responses, tend to assign higher scores to responses that share greater content similarity with contexts. However, adversarial negative responses, despite possessing high lexical overlap with contexts, can be semantically incongruous. Consequently, existing metrics struggle to effectively evaluate such responses, resulting in low correlations with human judgments. While recent studies have demonstrated the effectiveness of Large Language Models (LLMs) for open-domain dialogue evaluation, they still face challenges in handling adversarial negative examples. We propose a novel evaluation framework that integrates Abstract Meaning Representation (AMR) enhanced domain-specific language models (SLMs) with LLMs. Our SLMs explicitly incorporate AMR graph information through a gating mechanism for enhanced semantic representation learning, while both SLM predictions and AMR knowledge are integrated into LLM prompts for robust evaluation. Extensive experiments on open-domain dialogue evaluation tasks demonstrate the superiority of our method compared to state-of-the-art baselines. Our comprehensive ablation studies reveal that AMR graph information contributes substantially more to performance improvements. Our framework achieves strong correlations with human judgments across multiple datasets, establishing a new benchmark for dialogue evaluation. Our code and data are publicly available.

cs.CL↗

arXiv2025

Crafting Customisable Characters with LLMs: A Persona-Driven Role-Playing Agent Framework

Large Language Models (LLMs) demonstrate remarkable ability to comprehend instructions and generate human-like text, enabling sophisticated agent simulation beyond basic behavior replication. However, the potential for creating freely customisable characters remains underexplored. We introduce the Customisable Conversation Agent Framework, which employs LLMs to simulate real-world characters through personalised characteristic feature injection, enabling diverse character creation according to user preferences. We propose the SimsConv dataset, comprising 68 customised characters and 13,971 multi-turn role-playing dialogues across 1,360 real-world scenes. Characters are initially customised using pre-defined elements (career, aspiration, traits, skills), then expanded through personal and social profiles. Building on this, we present SimsChat, a freely customisable role-playing agent incorporating various realistic settings and topic-specified character interactions. Experimental results on both SimsConv and WikiRoleEval datasets demonstrate SimsChat's superior performance in maintaining character consistency, knowledge accuracy, and appropriate question rejection compared to existing models. Our framework provides valuable insights for developing more accurate and customisable human simulacra. Our data and code are publicly available at https://github.com/Bernard-Yang/SimsChat.

cs.CL↗

arXiv2025

YuE: Scaling Open Foundation Models for Long-Form Music Generation

We tackle the task of long-form music generation--particularly the challenging \textbf{lyrics-to-song} problem--by introducing YuE, a family of open foundation models based on the LLaMA2 architecture. Specifically, YuE scales to trillions of tokens and generates up to five minutes of music while maintaining lyrical alignment, coherent musical structure, and engaging vocal melodies with appropriate accompaniment. It achieves this through (1) track-decoupled next-token prediction to overcome dense mixture signals, (2) structural progressive conditioning for long-context lyrical alignment, and (3) a multitask, multiphase pre-training recipe to converge and generalize. In addition, we redesign the in-context learning technique for music generation, enabling versatile style transfer (e.g., converting Japanese city pop into an English rap while preserving the original accompaniment) and bidirectional generation. Through extensive evaluation, we demonstrate that YuE matches or even surpasses some of the proprietary systems in musicality and vocal agility. In addition, fine-tuning YuE enables additional controls and enhanced support for tail languages. Furthermore, beyond generation, we show that YuE's learned representations can perform well on music understanding tasks, where the results of YuE match or exceed state-of-the-art methods on the MARBLE benchmark. Keywords: lyrics2song, song generation, long-form, foundation model, music generation

eess.AS↗

arXiv2025

Comparing Apples to Oranges: A Dataset & Analysis of LLM Humour Understanding from Traditional Puns to Topical Jokes

Humour, as a complex language form, is derived from myriad aspects of life. Whilst existing work on computational humour has focussed almost exclusively on short pun-based jokes, we investigate whether the ability of Large Language Models (LLMs) to explain humour depends on the particular form. We compare models' joke explanation abilities from simple puns to complex topical humour that requires esoteric knowledge of real-world entities and events. To this end, we curate a dataset of 600 jokes across 4 joke types and manually write high-quality explanations. These jokes include heterographic and homographic puns, contemporary internet humour, and topical jokes. Using this dataset, we compare the zero-shot abilities of a range of LLMs to accurately and comprehensively explain jokes of different types, identifying key research gaps in the task of humour explanation. We find that none of the tested models (including reasoning models) are capable of reliably generating adequate explanations of all joke types, further highlighting the narrow focus of most existing works on overly simple joke forms.

cs.CL↗

arXiv2025

Beyond One-Size-Fits-All: Inversion Learning for Highly Effective NLG Evaluation Prompts

Evaluating natural language generation systems is challenging due to the diversity of valid outputs. While human evaluation is the gold standard, it suffers from inconsistencies, lack of standardisation, and demographic biases, limiting reproducibility. LLM-based evaluators offer a scalable alternative but are highly sensitive to prompt design, where small variations can lead to significant discrepancies. In this work, we propose an inversion learning method that learns effective reverse mappings from model outputs back to their input instructions, enabling the automatic generation of highly effective, model-specific evaluation prompts. Our method requires only a single evaluation sample and eliminates the need for time-consuming manual prompt engineering, thereby improving both efficiency and robustness. Our work contributes toward a new direction for more robust and efficient LLM-based evaluation.

cs.CL↗

arXiv2025

Benchmarking for Domain-Specific LLMs: A Case Study on Academia and Beyond

The increasing demand for domain-specific evaluation of large language models (LLMs) has led to the development of numerous benchmarks. These efforts often adhere to the principle of data scaling, relying on large corpora or extensive question-answer (QA) sets to ensure broad coverage. However, the impact of corpus and QA set design on the precision and recall of domain-specific LLM performance remains poorly understood. In this paper, we argue that data scaling is not always the optimal principle for domain-specific benchmark construction. Instead, we introduce Comp-Comp, an iterative benchmarking framework grounded in the principle of comprehensiveness and compactness. Comprehensiveness ensures semantic recall by covering the full breadth of the domain, while compactness improves precision by reducing redundancy and noise. To demonstrate the effectiveness of our approach, we present a case study conducted at a well-renowned university, resulting in the creation of PolyBench, a large-scale, high-quality academic benchmark. Although this study focuses on academia, the Comp-Comp framework is domain-agnostic and readily adaptable to a wide range of specialized fields. The source code and datasets can be accessed at https://github.com/Anya-RB-Chen/COMP-COMP.

cs.AI↗

arXiv2025

Advancing Dialectal Arabic to Modern Standard Arabic Machine Translation

Dialectal Arabic (DA) poses a persistent challenge for natural language processing (NLP), as most everyday communication in the Arab world occurs in dialects that diverge significantly from Modern Standard Arabic (MSA). This linguistic divide impedes progress in Arabic machine translation. This paper presents two core contributions to advancing DA-MSA translation for the Levantine, Egyptian, and Gulf dialects, particularly in low-resource and computationally constrained settings: (i) a comprehensive evaluation of training-free prompting techniques, and (ii) the development of a resource-efficient fine-tuning pipeline. Our evaluation of prompting strategies across six large language models (LLMs) found that few-shot prompting consistently outperformed zero-shot, chain-of-thought, and our proposed Ara-TEaR method. Ara-TEaR is designed as a three-stage self-refinement prompting process, targeting frequent meaning-transfer and adaptation errors in DA-MSA translation. In this evaluation, GPT-4o achieved the highest performance across all prompting settings. For fine-tuning LLMs, a quantized Gemma2-9B model achieved a chrF++ score of 49.88, outperforming zero-shot GPT-4o (44.58). Joint multi-dialect trained models outperformed single-dialect counterparts by over 10% chrF++, and 4-bit quantization reduced memory usage by 60% with less than 1% performance loss. The results and insights of our experiments offer a practical blueprint for improving dialectal inclusion in Arabic NLP, showing that high-quality DA-MSA machine translation is achievable even with limited resources and paving the way for more inclusive language technologies.

cs.CL↗