arXiv subjects

Chenyin Gao

Publications and source records attributed to Chenyin Gao.

13 recordsLinked to original sources

arXiv2025

Causal Inference on Sequential Treatments via Tensor Completion

Marginal Structural Models (MSMs) are popular for causal inference of sequential treatments in longitudinal observational studies, which however are sensitive to model misspecification. To achieve flexible modeling, we envision the potential outcomes to form a three-dimensional tensor indexed by subject, time, and treatment regime and propose a tensorized history-restricted MSM (HRMSM). The semi-parametric tensor factor model allows us to leverage the underlying low-rank structure of the potential outcomes tensor and exploit the pre-treatment covariate information to recover the counterfactual outcomes. We incorporate the inverse probability of treatment weighting in the loss function for tensor completion to adjust for time-varying confounding. Theoretically, a non-asymptotic upper bound on the Frobenius norm error for the proposed estimator is provided. Empirically, simulation studies show that the proposed tensor completion approach outperforms the parametric HRMSM and existing matrix/tensor completion methods. Finally, we illustrate the practical utility of the proposed approach to study the effect of ventilation on organ dysfunction from the Medical Information Mart for Intensive Care database.

stat.ME↗

arXiv2025

Doubly protected estimation for survival outcomes utilizing external controls for randomized clinical trials

Censored survival data are common in clinical trials, but small control groups can pose challenges, particularly in rare diseases or where balanced randomization is impractical. Recent approaches leverage external controls from historical studies or real-world data to strengthen treatment evaluation for survival outcomes. However, using external controls directly may introduce biases due to data heterogeneity. We propose a doubly protected estimator for the treatment-specific restricted mean survival time difference that is more efficient than trial-only estimators and mitigates biases from external data. Our method adjusts for covariate shifts via doubly robust estimation and addresses outcome drift using the DR-Learner for selective borrowing. The approach can incorporate machine learning to approximate survival curves and detect outcome drifts without strict parametric assumptions, borrowing only comparable external controls. Extensive simulation studies and a real-data application evaluating the efficacy of Galcanezumab in mitigating migraine headaches have been conducted to illustrate the effectiveness of our proposed framework.

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arXiv2025

Doubly robust omnibus sensitivity analysis of externally controlled trials with intercurrent events

Externally controlled trials are crucial in clinical development when randomized controlled trials are unethical or impractical. These trials consist of a full treatment arm with the experimental treatment and a full external control arm. However, they present significant challenges in learning the treatment effect due to the lack of randomization and a parallel control group. Besides baseline incomparability, outcome mean non-exchangeability, caused by differences in conditional outcome distributions between external controls and counterfactual concurrent controls, is infeasible to test and may introduce biases in evaluating the treatment effect. Sensitivity analysis of outcome mean non-exchangeability is thus critically important to assess the robustness of the study's conclusions against such assumption violations. Moreover, intercurrent events, which are ubiquitous and inevitable in clinical studies, can further confound the treatment effect and hinder the interpretation of the estimated treatment effects. This paper establishes a semi-parametric framework for externally controlled trials with intercurrent events, offering doubly robust and locally optimal estimators for primary and sensitivity analyses. We develop an omnibus sensitivity analysis that accounts for both outcome mean non-exchangeability and the impacts of intercurrent events simultaneously, ensuring root-n consistency and asymptotic normality under specified conditions. The performance of the proposed sensitivity analysis is evaluated in simulation studies and a real-data problem.

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arXiv2025

On the Role of Surrogates in Conformal Inference of Individual Causal Effects

Learning the Individual Treatment Effect (ITE) is essential for personalized decision-making, yet causal inference has traditionally focused on aggregated treatment effects. While integrating conformal prediction with causal inference can provide valid uncertainty quantification for ITEs, the resulting prediction intervals are often excessively wide, limiting their practical utility. To address this limitation, we introduce \underline{S}urrogate-assisted \underline{C}onformal \underline{I}nference for \underline{E}fficient I\underline{N}dividual \underline{C}ausal \underline{E}ffects (SCIENCE), a framework designed to construct more efficient prediction intervals for ITEs. SCIENCE accommodates the covariate shifts between source data and target data and applies to various data configurations, including semi-supervised and surrogate-assisted semi-supervised learning. Leveraging semi-parametric efficiency theory, SCIENCE produces rate double-robust prediction intervals under mild rate convergence conditions, permitting the use of flexible non-parametric models to estimate nuisance functions. We quantify efficiency gains by comparing semi-parametric efficiency bounds with and without the surrogates. Simulation studies demonstrate that our surrogate-assisted intervals offer substantial efficiency improvements over existing methods while maintaining valid group-conditional coverage. Applied to the phase 3 Moderna COVE COVID-19 vaccine trial, SCIENCE illustrates how multiple surrogate markers can be leveraged to generate more efficient prediction intervals.

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arXiv2024

Improving randomized controlled trial analysis via data-adaptive borrowing

In recent years, real-world external controls have grown in popularity as a tool to empower randomized placebo-controlled trials, particularly in rare diseases or cases where balanced randomization is unethical or impractical. However, as external controls are not always comparable to the trials, direct borrowing without scrutiny may heavily bias the treatment effect estimator. Our paper proposes a data-adaptive integrative framework capable of preventing unknown biases of the external controls. The adaptive nature is achieved by dynamically sorting out a comparable subset of the external controls via bias penalization. Our proposed method can simultaneously achieve (a) the semiparametric efficiency bound when the external controls are comparable and (b) selective borrowing that mitigates the impact of the existence of incomparable external controls. Furthermore, we establish statistical guarantees, including consistency, asymptotic distribution, and inference, providing type-I error control and good power. Extensive simulations and two real-data applications show that the proposed method leads to improved performance over the trial-only estimator across various bias-generating scenarios.

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arXiv2024

Enhancing convolutional neural network generalizability via low-rank weight approximation

Noise is ubiquitous during image acquisition. Sufficient denoising is often an important first step for image processing. In recent decades, deep neural networks (DNNs) have been widely used for image denoising. Most DNN-based image denoising methods require a large-scale dataset or focus on supervised settings, in which single/pairs of clean images or a set of noisy images are required. This poses a significant burden on the image acquisition process. Moreover, denoisers trained on datasets of limited scale may incur over-fitting. To mitigate these issues, we introduce a new self-supervised framework for image denoising based on the Tucker low-rank tensor approximation. With the proposed design, we are able to characterize our denoiser with fewer parameters and train it based on a single image, which considerably improves the model's generalizability and reduces the cost of data acquisition. Extensive experiments on both synthetic and real-world noisy images have been conducted. Empirical results show that our proposed method outperforms existing non-learning-based methods (e.g., low-pass filter, non-local mean), single-image unsupervised denoisers (e.g., DIP, NN+BM3D) evaluated on both in-sample and out-sample datasets. The proposed method even achieves comparable performances with some supervised methods (e.g., DnCNN).

cs.CV↗

arXiv2024

Estimating spatially varying health effects of wildland fire smoke using mobile health data

Wildland fire smoke exposures are an increasing threat to public health, and thus there is a growing need for studying the effects of protective behaviors on reducing health outcomes. Emerging smartphone applications provide unprecedented opportunities to deliver health risk communication messages to a large number of individuals when and where they experience the exposure and subsequently study the effectiveness, but also pose novel methodological challenges. Smoke Sense, a citizen science project, provides an interactive smartphone app platform for participants to engage with information about air quality and ways to protect their health and record their own health symptoms and actions taken to reduce smoke exposure. We propose a new, doubly robust estimator of the structural nested mean model parameter that accounts for spatially- and time-varying effects via a local estimating equation approach with geographical kernel weighting. Moreover, our analytical framework is flexible enough to handle informative missingness by inverse probability weighting of estimating functions. We evaluate the new method using extensive simulation studies and apply it to Smoke Sense data reported by the citizen scientists to increase the knowledge base about the relationship between health preventive measures and improved health outcomes. Our results estimate how the protective behaviors effects vary over space and time and find that protective behaviors have more significant effects on reducing health symptoms in the Southwest than the Northwest region of the USA.

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arXiv2024

Causal Customer Churn Analysis with Low-rank Tensor Block Hazard Model

This study introduces an innovative method for analyzing the impact of various interventions on customer churn, using the potential outcomes framework. We present a new causal model, the tensorized latent factor block hazard model, which incorporates tensor completion methods for a principled causal analysis of customer churn. A crucial element of our approach is the formulation of a 1-bit tensor completion for the parameter tensor. This captures hidden customer characteristics and temporal elements from churn records, effectively addressing the binary nature of churn data and its time-monotonic trends. Our model also uniquely categorizes interventions by their similar impacts, enhancing the precision and practicality of implementing customer retention strategies. For computational efficiency, we apply a projected gradient descent algorithm combined with spectral clustering. We lay down the theoretical groundwork for our model, including its non-asymptotic properties. The efficacy and superiority of our model are further validated through comprehensive experiments on both simulated and real-world applications.

stat.ML↗

arXiv2023

Real Effect or Bias? Best Practices for Evaluating the Robustness of Real-World Evidence through Quantitative Sensitivity Analysis for Unmeasured Confounding

The assumption of no unmeasured confounders is a critical but unverifiable assumption required for causal inference yet quantitative sensitivity analyses to assess robustness of real-world evidence remains underutilized. The lack of use is likely in part due to complexity of implementation and often specific and restrictive data requirements required for application of each method. With the advent of sensitivity analyses methods that are broadly applicable in that they do not require identification of a specific unmeasured confounder, along with publicly available code for implementation, roadblocks toward broader use are decreasing. To spur greater application, here we present a best practice guidance to address the potential for unmeasured confounding at both the design and analysis stages, including a set of framing questions and an analytic toolbox for researchers. The questions at the design stage guide the research through steps evaluating the potential robustness of the design while encouraging gathering of additional data to reduce uncertainty due to potential confounding. At the analysis stage, the questions guide researchers to quantifying the robustness of the observed result and providing researchers with a clearer indication of the robustness of their conclusions. We demonstrate the application of the guidance using simulated data based on a real-world fibromyalgia study, applying multiple methods from our analytic toolbox for illustration purposes.

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arXiv2023

Pretest estimation in combining probability and non-probability samples

Multiple heterogeneous data sources are becoming increasingly available for statistical analyses in the era of big data. As an important example in finite-population inference, we develop a unified framework of the test-and-pool approach to general parameter estimation by combining gold-standard probability and non-probability samples. We focus on the case when the study variable is observed in both datasets for estimating the target parameters, and each contains other auxiliary variables. Utilizing the probability design, we conduct a pretest procedure to determine the comparability of the non-probability data with the probability data and decide whether or not to leverage the non-probability data in a pooled analysis. When the probability and non-probability data are comparable, our approach combines both data for efficient estimation. Otherwise, we retain only the probability data for estimation. We also characterize the asymptotic distribution of the proposed test-and-pool estimator under a local alternative and provide a data-adaptive procedure to select the critical tuning parameters that target the smallest mean square error of the test-and-pool estimator. Lastly, to deal with the non-regularity of the test-and-pool estimator, we construct a robust confidence interval that has a good finite-sample coverage property.

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arXiv2023

Soft calibration for selection bias problems under mixed-effects models

Calibration weighting has been widely used to correct selection biases in non-probability sampling, missing data, and causal inference. The main idea is to calibrate the biased sample to the benchmark by adjusting the subject weights. However, hard calibration can produce enormous weights when an exact calibration is enforced on a large set of extraneous covariates. This article proposes a soft calibration scheme, in which the outcome and the selection indicator follow mixed-effects models. The scheme imposes an exact calibration on the fixed effects and an approximate calibration on the random effects. On the one hand, our soft calibration has an intrinsic connection with best linear unbiased prediction, which results in a more efficient estimation compared to hard calibration. On the other hand, soft calibration weighting estimation can be envisioned as penalized propensity score weight estimation, with the penalty term motivated by the mixed-effects structure. The asymptotic distribution and a valid variance estimator are derived for soft calibration. We demonstrate the superiority of the proposed estimator over other competitors in simulation studies and a real-data application.

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arXiv2022

Elastic Integrative Analysis of Randomized Trial and Real-World Data for Treatment Heterogeneity Estimation

We propose a test-based elastic integrative analysis of the randomized trial and real-world data to estimate treatment effect heterogeneity with a vector of known effect modifiers. When the real-world data are not subject to bias, our approach combines the trial and real-world data for efficient estimation. Utilizing the trial design, we construct a test to decide whether or not to use real-world data. We characterize the asymptotic distribution of the test-based estimator under local alternatives. We provide a data-adaptive procedure to select the test threshold that promises the smallest mean square error and an elastic confidence interval with a good finite-sample coverage property.

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arXiv2022

Nearest neighbor ratio imputation with incomplete multi-nomial outcome in survey sampling

Nonresponse is a common problem in survey sampling. Appropriate treatment can be challenging, especially when dealing with detailed breakdowns of totals. Often, the nearest neighbor imputation method is used to handle such incomplete multinomial data. In this article, we investigate the nearest neighbor ratio imputation estimator, in which auxiliary variables are used to identify the closest donor and the vector of proportions from the donor is applied to the total of the recipient to implement ratio imputation. To estimate the asymptotic variance, we first treat the nearest neighbor ratio imputation as a special case of predictive matching imputation and apply the linearization method of \cite{yang2020asymptotic}. To account for the non-negligible sampling fractions, parametric and generalized additive models are employed to incorporate the smoothness of the imputation estimator, which results in a valid variance estimator. We apply the proposed method to estimate expenditures detail items based on empirical data from the 2018 collection of the Service Annual Survey, conducted by the United States Census Bureau. Our simulation results demonstrate the validity of our proposed estimators and also confirm that the derived variance estimators have good performance even when the sampling fraction is non-negligible.

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