arXiv subjects

ChiYung Yam

Publications and source records attributed to ChiYung Yam.

15 recordsLinked to original sources

arXiv2026

Voltage-embedded equivariant machine learning potential for open system simulations

Modeling electrochemical interfaces under operational non-equilibrium conditions is vital for energy technologies but remains bottlenecked by the expensive cost of ab initio methods. Current machine learning potentials, largely designed for closed systems under homogeneous electric fields, are limited in open quantum transport applications. To overcome this, we present an E(3)-equivariant graph neural network that embeds voltage bias for open-system simulations. Our approach decouples the system energy and forces into zero-bias and bias-dependent contributions, assigning distinct vector encodings to electrode and scattering-region atoms to capture non-equilibrium conditions. Trained on limited discrete bias data, the model achieves high predictive accuracy and robust extrapolation transferability. When applied to a lithium/water interface, our model successfully captures the field-induced dynamic reorientation of water molecules and reproduces asymmetric electrochemical behavior at different electrodes.

physics.chem-ph↗

arXiv2025

A foundation machine learning potential with polarizable long-range interactions for materials modelling

Long-range interactions are essential determinants of chemical system behaviour across diverse environments. We present a foundation framework that integrates explicit polarizable long-range physics with an equivariant graph neural network potential. It employs a physically motivated polarizable charge equilibration scheme that directly optimizes electrostatic interaction energies rather than partial charges. The foundation model, trained across the periodic table up to Pu, demonstrates strong performance across key materials modelling challenges. It effectively captures long-range interactions that are challenging for traditional message-passing mechanisms and accurately reproduces polarization effects under external electric fields. We have applied the model to mechanical properties, ionic diffusivity in solid-state electrolytes, ferroelectric phase transitions, and reactive dynamics at electrode-electrolyte interfaces, highlighting the model's capacity to balance accuracy and computational efficiency. Furthermore, we show that as a foundation model, it can be efficiently finetuned to achieve high-level accuracy for specific challenging systems.

physics.chem-ph↗

arXiv2024

Enhancing Accuracy and Feature Insights in Hydration Free Energy Predictions for Small Molecules with Machine Learning

The accurate prediction of solvation free energy is of significant importance as it governs the behavior of solutes in solution. In this work, we apply a variety of machine learning techniques to predict and analyze the alchemical free energy of small molecules. Our methodology incorporates an ensemble of machine learning models with feature processing using the K-nearest neighbors algorithm. Two training strategies are explored: one based on experimental data, and the other based on the offset between molecular dynamics (MD) simulations and experimental measurements. The latter approach yields a substantial improvement in predictive accuracy, achieving a mean unsigned error (MUE) of 0.64 kcal/mol. Feature analysis identifies molecular geometry and topology as the most critical factors in predicting alchemical free energy, supporting the established theory that surface tension is a key determinant. Furthermore, the feature analysis of offset results highlights the relevance of charge distribution within the system, which correlates with the inaccuracies in force fields employed in MD simulations and may provide guidance for improving force field designs. These results suggest that machine learning approaches can effectively capture the complex features governing solvation free energy, offering novel pathways for enhancing predictive accuracy.

physics.chem-ph↗

arXiv2023

Predictions of photophysical properties of phosphorescent platinum(II) complexes based on ensemble machine learning approach

Phosphorescent metal complexes have been under intense investigations as emissive dopants for energy efficient organic light emitting diodes (OLEDs). Among them, cyclometalated Pt(II) complexes are widespread triplet emitters with color-tunable emissions. To render their practical applications as OLED emitters, it is in great need to develop Pt(II) complexes with high radiative decay rate constant ($k_r$) and photoluminescence (PL) quantum yield. Thus, an efficient and accurate prediction tool is highly desirable. Here, we develop a general protocol for accurate predictions of emission wavelength, radiative decay rate constant, and PL quantum yield for phosphorescent Pt(II) emitters based on the combination of first-principles quantum mechanical method, machine learning (ML) and experimental calibration. A new dataset concerning phosphorescent Pt(II) emitters is constructed, with more than two hundred samples collected from the literature. Features containing pertinent electronic properties of the complexes are chosen. Our results demonstrate that ensemble learning models combined with stacking-based approaches exhibit the best performance, where the values of squared correlation coefficients ($R^2$), mean absolute error (MAE), and root mean square error (RMSE) are 0.96, 7.21 nm and 13.00 nm for emission wavelength prediction, and 0.81, 0.11 and 0.15 for PL quantum yield prediction. For radiative decay rate constant ($k_r$), the obtained value of $R^2$ is 0.67 while MAE and RMSE are 0.21 and 0.25 (both in log scale), respectively. The accuracy of the protocol is further confirmed using 24 recently reported Pt(II) complexes, which demonstrates its reliability for a broad palette of Pt(II) emitters.We expect this protocol will become a valuable tool, accelerating the rational design of novel OLED materials with desired properties.

cs.LG↗

arXiv2022

Molecular Dynamics Study of Plasmon-Mediated Chemical Transformations

Heterogeneous catalysis of adsorbates on metallic surfaces mediated by plasmon has potential high photoelectric conversion efficiency and controllable reaction selectivity. Theoretical modeling of dynamical reaction processes provides in-depth analyses complementing experimental investigations. Especially for plasmon-mediated chemical transformations, light absorption, photoelectric conversion, electron-electron scattering, and electron-phonon coupling occur simultaneously at different timescales, rendering it very challenging to delineate the complex interplay of different factors. In this work, a trajectory surface hopping non-adiabatic molecular dynamics method is used to investigate the dynamics of plasmon excitation in an Au$_{20}$-CO system, including hot carrier generation, plasmon energy relaxation, and CO activation induced by electron-vibration coupling. The electronic properties indicate that when Au$_{20}$-CO is excited, a partial charge transfer takes place from Au$_{20}$ to CO. On the other hand, the dynamical simulations show that hot carriers generated after plasmon excitation transfer back and forth between Au$_{20}$ and CO. Meanwhile, the C-O stretching mode is activated due to the non-adiabatic couplings. The efficiency of plasmon-mediated transformation ($\sim$40\%) is obtained based on the ensemble average of these quantities. Our simulations provide important dynamical and atomistic insights into plasmon-mediated chemical transformation from the perspective of non-adiabatic simulations.

physics.chem-ph↗

arXiv2021

Phononic thermal transport along graphene grain boundaries

We reveal that phononic thermal transport in graphene is not immune to grain boundaries (GBs) aligned along the direction of the temperature gradient. Non-equilibrium molecular dynamics simulations uncover a large reduction in the phononic thermal conductivity ($κ_p$) along linear ultra-narrow GBs comprising periodically-repeating pentagon-heptagon dislocations. Green's function calculations and spectral energy density analysis indicate that $κ_p$ is the complex manifestation of the periodic strain field, which behaves as a reflective diffraction grating with both diffuse and specular phonon reflections, and represents a source of anharmonic phonon-phonon scattering. Our findings provide new insights into the integrity of the phononic thermal transport in GB graphene.

cond-mat.mes-hall↗

arXiv2020

Tracking the electronic oscillation in molecule with tunneling microscopy

Visualizing and controlling electron dynamics over femtosecond timescale play a key role in the design of next-generation electronic devices. Using simulations, we demonstrate the electronic oscillation inside the naphthalene molecule can be tracked by means of the tuning of delay time between two identical femtosecond laser pulses. Both the frequency and decay time of the oscillation are detected by the tunneling charge through the junction of scanning tunneling microscopy. And the tunneling charge is sensitive to the carrier-envelope phase (CEP) for few-cycle long optical pulses. While this sensitivity to CEP will disappear with the increase of time-length of pulses. Our simulation results show that it is possible to visualize and control the electron dynamics inside the molecule by one or two femtosecond laser pulses.

quant-ph↗

arXiv2020

Realization of Semiconducting Layered Multiferroic Heterojunctions via Asymmetrical Magnetoelectric Coupling

Two-dimensional (2D) semiconducting multiferroics that can effectively couple magnetic and polarization (P) orders have great interest for both fundamental research and technological applications in nanoscale, which are, however, rare in nature. In this study, we propose a general mechanism to realize semiconducting 2D multiferroics via vdW heterojunction engineering, as demonstrated in a typical heterostructure consisting of magnetic bilayer CrI3 (bi-CrI3) and ferroelectric monolayer In2Se3. Interestingly, the novel indirect orbital coupling between Se 4p and Cr 3d orbitals, intermediated by the interfacial I 5p orbitals, are switchable in the opposite P configurations, resulting in an unexpected mechanism of strong asymmetrical magnetoelectric coupling. Therefore, along with the noticeable ferroelectric energy barrier induced by In2Se3, the realization of opposite magnetic orders in opposite P configurations can eventually result in the novel multiferroicity in bi-CrI3/In2Se3. Finally, we demonstrate that our mechanism can generally be applied to design other vdW multiferroics even with tunable layer thickness.

cond-mat.mtrl-sci↗

arXiv2015

Quantum Mechanical Modeling of Nanoscale Light Emitting Diodes

Understanding of the electroluminescence (EL) mechanism in optoelectronic devices is important for further optimization of their efficiency and effectiveness. Here, a quantum mechanical approach is formulated for modeling EL processes in nanoscale light emitting diodes (LED). Based on nonequilibrium Green's function quantum transport equations, interactions with electromagnetic vacuum environment is included to describe electrically driven light emission in the devices. Numerical studies of a silicon nanowire LED device are presented. EL spectra of the nanowire device under different bias voltages are simulated and, more importantly, propagation and polarization of emitted photon can be determined using the current approach.

cond-mat.mtrl-sci↗

arXiv2015

Dissipative time-dependent quantum transport theory: quantum interference and phonon induced decoherence dynamics

A time-dependent inelastic electron transport theory for strong electron-phonon interaction is established via the equations of motion method combined with the small polaron transformation. In this work, the dissipation via electron-phonon coupling is taken into account in the strong coupling regime, which validates the small polaron transformation. The corresponding equations of motion are developed, which are used to study the quantum interference effect and phonon-induced decoherence dynamics in molecular junctions. Numerical studies show clearly quantum interference effect of the transport electrons through two quasi-degenerate states with different coupling to the leads. We also found that the quantum interference can be suppressed by the electron-phonon interaction where the phase coherence is destroyed by phonon scattering. This indicates the importance of electron-phonon interaction in systems with prominent quantum interference effect.

cond-mat.mes-hall↗

arXiv2015

Dissipative quantum transport at arbitrary parameter regime: a variational method

Recent development of theoretical method for dissipative quantum transport have achieved notable progresses in the weak or strong electron-phonon coupling regime. However, a generalized theory for dissipative quantum transport at arbitrary parameter regime is not figured out until now. In this work, a variational method for dissipative quantum transport at arbitrary electron-phonon coupling regime is developed by employing variational polaron theory. The optimal polaron transformation is determined by the optimization of the Feynman-Bogoliubov upper bound of free energy. % which is variational in nature. The free energy minimization ends up with an optimal mean-field Hamiltonian and a minimal interaction Hamiltonian. Hence, second-order perturbation can be applied to the transformed system, resulting an accurate and efficient method for the treatment of dissipative quantum transport with arbitrary electron-phonon coupling strength. Numerical benchmark calculation on an single site model with coupling to one phonon mode is also presented.

cond-mat.mes-hall↗

arXiv2013

A gauge-invariant and current-continuous microscopic ac quantum transport theory

There had been consensus on what the accurate ac quantum transport theory was until some recent works challenged the conventional wisdom. Basing on the non-equilibrium Green's function formalism for time-dependent quantum transport, we derive an expression for the dynamic admittance that satisfies gauge invariance and current continuity, and clarify the key concept in the field. The validity of our now formalism is verified by first-principles calculation of the transient current through a carbon-nanotube-based device under the time-dependent bias voltage. Moreover, the previously well-accepted expression for dynamic admittance is recovered only when the device is a perfect conductor at a specific potential.

cond-mat.mes-hall↗

arXiv2011

Time-dependent versus static quantum transport simulations beyond linear response

To explore whether the density-functional theory non-equilibrium Green's function formalism (DFT-NEGF) provides a rigorous framework for quantum transport, we carried out time-dependent density functional theory (TDDFT) calculations of the transient current through two realistic molecular devices, a carbon chain and a benzenediol molecule inbetween two aluminum electrodes. The TDDFT simulations for the steady state current exactly reproduce the results of fully self-consistent DFT-NEGF calculations even beyond linear response. In contrast, sizable differences are found with respect to an equilibrium, non-self-consistent treatment which are related here to differences in the Kohn-Sham and fully interacting susceptibility of the device region. Moreover, earlier analytical conjectures on the equivalence of static and time-dependent approaches in the low bias regime are confirmed with high numerical precision.

cond-mat.mtrl-sci↗

arXiv2010

Time-dependent density functional theory for quantum transport

Based on our earlier works [Phys. Rev. B 75, 195127 (2007) & J. Chem. Phys. 128, 234703 (2008)], we propose a formally exact and numerically convenient approach to simulate time-dependent quantum transport from first-principles. The proposed approach combines time-dependent density functional theory with quantum dissipation theory, and results in a useful tool for studying transient dynamics of electronic systems. Within the proposed exact theoretical framework, we construct a number of practical schemes for simulating realistic systems such as nanoscopic electronic devices. Computational cost of each scheme is analyzed, with the expected level of accuracy discussed. As a demonstration, a simulation based on the adiabatic wide-band limit approximation scheme is carried out to characterize the transient current response of a carbon nanotube based electronic device under time-dependent external voltages.

physics.chem-ph↗

arXiv2008

Equivalent electric circuit of a carbon nanotube based molecular conductor

We apply our first-principles method to simulate the transient electrical response through carbon nanotube based conductors under time-dependent bias voltages, and report the dynamic conductance for a specific system. We find that the electrical response of the carbon nanotube device can be mapped onto an equivalent classical electric circuit. This is confirmed by studying the electric response of a simple model system and its equivalent circuit.

physics.chem-ph↗