arXiv subjects

Chia-Hao Liu

Publications and source records attributed to Chia-Hao Liu.

8 recordsLinked to original sources

arXiv2026

diffpy.morph: Python tools for model independent comparisons between sets of 1D functions

diffpy$.$morph addresses a need to gain scientific insights from 1D scientific spectra in model independent ways. A powerful approach for this is to take differences between pairs of spectra and look for meaningful changes that might indicate underlying chemical, structural, or other modifications. The challenge is that the difference curve may contain uninteresting differences such as experimental inconsistencies and benign physical changes such as the effects of thermal expansion. diffpy$.$morph allows researchers to apply simple transformations, or "morphs", to one of the datasets to remove the unwanted differences revealing, when they are present, non-trivial differences. diffpy$.$morph is an open-source Python package available on the Python Package Index and conda-forge. Here, we describe its functionality and apply it to solve a range of experimental challenges on diffraction and PDF data from x-rays and neutrons, though we note that it may be applied to any 1D function in principle.

physics.comp-ph↗

arXiv2022

Robustness test of the spacegroupMining model for determining space groups from atomic pair distribution function data

Machine learning models based on convolutional neural networks have been used for predicting space groups of crystal structures from their atomic pair distribution function (PDF). However, the PDFs used to train the model are calculated using a fixed set of parameters that reflect specific experimental conditions, and the accuracy of the model when given PDFs generated with different choices of these parameters is unknown. In this paper, we report that the results of the top-1 accuracy and top-6 accuracy are robust when applied to PDFs of different choices of experimental parameters $r_\text{max}$, $Q_\text{max}$, $Q_\text{damp}$ and atomic displacement parameters.

cond-mat.mtrl-sci↗

arXiv2021

nmfMapping: a cloud-based web application for non-negative matrix factorization of powder diffraction and pair distribution function datasets

A cloud-hosted web-based software application, nmfMapping, for carrying out a nonnegative matrix factorization of a set of powder diffraction or atomic pair distribution function datasets is described. This app allows structure scientists to rapidly find trends in sets of related data such as from in situ and operando diffraction experiments. The application is easy to use and does not require any programming expertise. It is available at the pdfitc.org website.

cond-mat.mtrl-sci↗

arXiv2021

Towards scanning nanostructure x-ray microscopy

We demonstrate spatial mapping of the local and nano-scale structure of thin film objects using spatially resolved PDF analysis of synchrotron x-ray diffraction data. This is demonstrated in a lab-on-chip combinatorial array of sample spots containing catalytically interesting nanoparticles deposited from liquid precursors using an ink-jet liquid handling system. We present a software implementation of the whole protocol including an approach for automated data acquisition and analyis using the atomic pair distribution function (PDF) method. The protocol software can handle semi-automated data reduction, normalization and modelling, with user-defined recipes generating a comprehensive collection of metadata and analysis results. By slicing the collection using included functions it was possible to build images of the 2D object containing using different quantities for contrast, allowing us to determine the spatial map relating to different aspects of the local structure on the array.

cond-mat.mtrl-sci↗

arXiv2020

Validation of non-negative matrix factorization for assessment of atomic pair-distribution function (PDF) data in a real-time streaming context

We validate the use of matrix factorization for the automatic identification of relevant components from atomic pair distribution function (PDF) data. We also present a newly developed software infrastructure for analyzing the PDF data arriving in streaming manner. We then apply two matrix factorization techniques, Principal Component Analysis (PCA) and Non-negative Matrix Factorization (NMF), to study simulated and experiment datasets in the context of in situ experiment.

cond-mat.mtrl-sci↗

arXiv2020

sasPDF: pair distribution function analysis of nanoparticle assemblies from small-angle-scattering data

We extends pair distribution function (PDF) analysis into the small-angle scattering (SAS) regime and describe the data collection protocol for optimum data quality. We also present the PDFgetS3 software package that can be readily used to extract the PDF from small-angle scattering data. We then apply the sasPDF method to investigate structures of some representative nanoparticle assemblies (NPA) samples with different levels of structural order.

cond-mat.mtrl-sci↗

arXiv2019

Using a machine learning approach to determine the space group of a structure from the atomic pair distribution function (PDF)

We present a method for predicting the space group of a structure given a calculated or measured atomic pair distribution function (PDF) from that structure. The method utilizes machine learning models trained on more than 100,000 PDFs calculated from structures in the 45 most heavily represented space groups. In particular, we present a convolutional neural network (CNN) model which yields a promising result that it correctly identifies the space group among the top-6 estimates 91.9~\% of the time. The CNN model also successfully identifies space groups on 12 out of 15 experimental PDFs. We discuss interesting aspects of the failed estimates, which indicate that the CNN is failing in similar ways as conventional indexing algorithms applied to conventional powder diffraction data. This preliminary success of the CNN model shows the possibility of model-independent assessment of PDF data on a wide class of materials.

cond-mat.mtrl-sci↗

arXiv2019

Cluster-mining: An approach for determining core structures of metallic nanoparticles from atomic pair distribution function data

We present a novel approach for finding and evaluating structural models of small metallic nanoparticles. Rather than fitting a single model with many degrees of freedom, the approach algorithmically builds libraries of nanoparticle clusters from multiple structural motifs, and individually fits them to experimental PDFs. Each cluster-fit is highly constrained. The approach, called cluster-mining, returns all candidate structure models that are consistent with the data as measured by a goodness of fit. It is highly automated, easy to use, and yields models that are more physically realistic and result in better agreement to the data than models based on cubic close-packed crystallographic cores, often reported in the literature for metallic nanoparticles.

cond-mat.mtrl-sci↗