arXiv subjects

Chiara Vanalli

Publications and source records attributed to Chiara Vanalli.

2 recordsLinked to original sources

arXiv2026

A Geolocation-Aware Multimodal Approach for Ecological Prediction

While integrating multiple modalities has the potential to improve environmental monitoring, current approaches struggle to combine data sources with heterogeneous formats or contents. A central difficulty arises when combining continuous gridded data (e.g., remote sensing) with sparse and irregular point observations such as species records. Existing geostatistical and deep-learning-based approaches typically operate on a single modality or focus on spatially aligned inputs, and thus cannot seamlessly overcome this difficulty. We propose a Geolocation-Aware MultiModal Approach (GAMMA), a transformer-based fusion approach designed to integrate heterogeneous ecological data using explicit spatial context. Instead of interpolating observations into a common grid, GAMMA first represents all inputs as location-aware embeddings that preserve spatial relationships between samples. GAMMA dynamically selects relevant neighbours across modalities and spatial scales, enabling the model to jointly exploit continuous remote sensing imagery and sparse geolocated observations. We evaluate GAMMA on the task of predicting 103 environmental variables from the SWECO25 data cube across Switzerland. Inputs combine aerial imagery with biodiversity observations from GBIF and textual habitat descriptions from Wikipedia, provided by the EcoWikiRS dataset. Experiments show that multimodal fusion consistently improves prediction performance over single-modality baselines and that explicit spatial context further enhances model accuracy. The flexible architecture of GAMMA also allows to analyse the contribution of each modality through controlled ablation experiments. These results demonstrate the potential of location-aware multimodal learning for integrating heterogeneous ecological data and for supporting large-scale environmental mapping tasks and biodiversity monitoring.

cs.CL↗

arXiv2025

MaskSDM with Shapley values to improve flexibility, robustness, and explainability in species distribution modeling

Species Distribution Models (SDMs) play a vital role in biodiversity research, conservation planning, and ecological niche modeling by predicting species distributions based on environmental conditions. The selection of predictors is crucial, strongly impacting both model accuracy and how well the predictions reflect ecological patterns. To ensure meaningful insights, input variables must be carefully chosen to match the study objectives and the ecological requirements of the target species. However, existing SDMs, including both traditional and deep learning-based approaches, often lack key capabilities for variable selection: (i) flexibility to choose relevant predictors at inference without retraining; (ii) robustness to handle missing predictor values without compromising accuracy; and (iii) explainability to interpret and accurately quantify each predictor's contribution. To overcome these limitations, we introduce MaskSDM, a novel deep learning-based SDM that enables flexible predictor selection by employing a masked training strategy. This approach allows the model to make predictions with arbitrary subsets of input variables while remaining robust to missing data. It also provides a clearer understanding of how adding or removing a given predictor affects model performance and predictions. Additionally, MaskSDM leverages Shapley values for precise predictor contribution assessments, improving upon traditional approximations. We evaluate MaskSDM on the global sPlotOpen dataset, modeling the distributions of 12,738 plant species. Our results show that MaskSDM outperforms imputation-based methods and approximates models trained on specific subsets of variables. These findings underscore MaskSDM's potential to increase the applicability and adoption of SDMs, laying the groundwork for developing foundation models in SDMs that can be readily applied to diverse ecological applications.

cs.LG↗