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Chikashi Arita

Publications and source records attributed to Chikashi Arita.

At least 19 recordsLinked to original sources

Bidirectional Non-Markovian Exclusion Processes

Bidirectional transport in (quasi) one-dimensional systems generically leads to cluster-formation and small particle currents. This kind of transport can be described by the asymmetric simple exclusion process (ASEP) with two species of particles. In this work, we consider the effect of non-Markovian site exchange times between particles. Different realizations of the exchange process can be considered: The exchange times can be assigned to the lattice bonds or each particle. In the latter case we specify additionally which of the two exchange times is executed, the earlier one (minimum rule) or the later one (maximum rule). In a combined numerical and analytical approach we find evidence that we recover the same asymptotic behavior as for unidirectional transport for most realizations of the exchange process. Differences in the asymptotic behavior of the system have been found for the minimum rule which is more efficient for fast decaying exchange time distributions.

nlin.CG

Interacting elephant random walks

The elephant random walk is a history-dependent random walk. We study a class of interacting elephant random walks. Our model includes the exclusion process as a special case. By means of Monte Carlo simulations and mean-field arguments, we find that it exhibits a condensation phenomenon with a phase transition that is manifestly of first order. The transition point depends on the initial configuration.

cond-mat.stat-mech

Bulk diffusion in a kinetically constrained lattice gas

In the hydrodynamic regime, the evolution of a stochastic lattice gas with symmetric hopping rules is described by a diffusion equation with density-dependent diffusion coefficient encapsulating all microscopic details of the dynamics. This diffusion coefficient is, in principle, determined by a Green-Kubo formula. In practice, even when the equilibrium properties of a lattice gas are analytically known, the diffusion coefficient cannot be computed except when a lattice gas additionally satisfies the gradient condition. We develop a procedure to systematically obtain analytical approximations for the diffusion coefficient for non-gradient lattice gases with known equilibrium. The method relies on a variational formula found by Varadhan and Spohn which is a version of the Green-Kubo formula particularly suitable for diffusive lattice gases. Restricting the variational formula to finite-dimensional sub-spaces allows one to perform the minimization and gives upper bounds for the diffusion coefficient. We apply this approach to a kinetically constrained non-gradient lattice gas, viz. to the Kob-Andersen model on the square lattice.

cond-mat.stat-mech

Localization of a microtubule organizing center by kinesin motors

The microtubule (MT) motor Kip3p is very processive kinesin that promotes catastrophes and pausing in particular on cortical contact. These properties explain the role of Kip3p in positioning the mitotic spindle in budding yeast and potentially other processes controlled by kinesin-8 family members. We present a theoretical approach to positioning of a MT network in a cell. In order to explore the underlying mechanism we introduce an idealized system of two MTs connected by a microtubule organizing center (MTOC). The dynamics of Kip3p is modeled by interacting stochastic particles, which allows us to study the effects of motor-induced depolymerization under spatial confinement. We find that localization in the middle of the system is realized in a parameter regime where the motor densities on the MTs are increasing with the distance from the MTOC. Localization at an asymmetric position is also possible by tuning the kinesin input rates at the MT minus ends or attachment rates depending on different compartments of the cell.

q-bio.QM

Variational calculation of transport coefficients in diffusive lattice gases

A diffusive lattice gas is characterized by the diffusion coefficient depending only on the density. The Green-Kubo formula for diffusivity can be represented as a variational formula, but even when the equilibrium properties of a lattice gas are analytically known the diffusion coefficient can be computed only in the exceptional situation when the lattice gas is gradient. In the general case, minimization over an infinite-dimensional space is required. We propose an approximation scheme based on minimizing over finite-dimensional subspaces of functions. The procedure is demonstrated for one-dimensional generalized exclusion processes in which each site can accommodate at most two particles. Our analytical predictions provide upper bounds for the diffusivity that are very close to simulation results throughout the entire density range. We also analyze non-equilibrium density profiles for finite chains coupled to reservoirs. The predictions for the profiles are in excellent agreement with simulations.

cond-mat.stat-mech

Signal optimization in urban transport: A totally asymmetric simple exclusion process with traffic lights

We consider the exclusion process on a ring with time-dependent defective bonds at which the hoping rate periodically switches between zero and one. This system models main roads in city traffics, intersecting with perpendicular streets. We explore basic properties of the system, in particular dependence of the vehicular flow on the parameters of signalization as well as the system size and the car density. We investigate various types of the spatial distribution of the vehicular density, and show existence of a shock profile. We also measure waiting time behind traffic lights, and examine its relationship with the traffic flow.

physics.soc-ph

Phase coexistence phenomena in an extreme case of the misanthrope process with open boundaries

The misanthrope process is a class of stochastic interacting particle systems, generalizing the simple exclusion process. It allows each site of the lattice to accommodate more than one particle. We consider a special case of the one dimensional misanthrope process whose probability distribution is completely equivalent to the ordinary simple exclusion process under the periodic boundary condition. By imposing open boundaries, high- and low-density domains can coexist in the system, which we investigate by Monte Carlo simulations. We examine finite-size corrections of density profiles and correlation functions, when the jump rule for particles is symmetric. Moreover, we study properties of delocalized and localized shocks in the case of the totally asymmetric jump rule. The localized shock slowly moves to its stable position in the bulk.

nlin.CG

Synchronized shocks in an inhomogeneous exclusion process

We study an exclusion process with 4 segments, which was recently introduced by T Banerjee, N Sarkar and A Basu [J. Stat. Mech. (2015) P01024]. The segments have hopping rates 1, r(<1), 1 and r, respectively. In a certain parameter region, two shocks appear, which are not static but synchronized. We explore dynamical properties of each shock and correlation of shocks, by means of the so-called second-class particle. The mean-squared displacement of shocks has three diffusive regimes, and the asymptotic diffusion coefficient is different from the known formula. In some time interval, it also exhibits sub-diffusion, being proportional to t^{1/2} . Furthermore we introduce a correlation function and a crossover time, in order to quantitatively characterize the synchronization. We numerically estimate the dynamical exponent for the crossover time. We also revisit the 2-segment case and the open boundary condition for comparison.

cond-mat.stat-mech

Two dimensional outflows for cellular automata with shuffle updates

In this paper, we explore the two-dimensional behavior of cellular automata with shuffle updates. As a test case, we consider the evacuation of a square room by pedestrians modeled by a cellular automaton model with a static floor field. Shuffle updates are characterized by a variable associated to each particle and called phase, that can be interpreted as the phase in the step cycle in the frame of pedestrian flows. Here we also introduce a dynamics for these phases, in order to modify the properties of the model. We investigate in particular the crossover between low- and high-density regimes that occurs when the density of pedestrians increases, the dependency of the outflow in the strength of the floor field, and the shape of the queue in front of the exit. Eventually we discuss the relevance of these results for pedestrians.

nlin.CG

Length regulation of microtubules by molecular motors: Exact solution and density profiles

In this work we study a microtubule (MT) model, whose length is regulated by the action of processive kinesin motors. We treat the case of infinite processivity, i.e. particle exchange in the bulk is neglected. The exact results can be obtained for model parameters which correspond to a finite length of the MT. In contrast to the model with particle exchange we find that the lengths of the MT are exponentially distributed in this parameter regime. The remaining parameter space of the model, which corresponds to diverging MT lengths, is analyzed by means of extensive Monte Carlo simulations and a macroscopic approach. For divergent MTs we find a complex structure of the phase diagram in terms of shapes of the density profile.

cond-mat.stat-mech

Effective ergodicity breaking in an exclusion process with varying system length

Stochastic processes of interacting particles with varying length are relevant e.g. for several biological applications. We try to explore what kind of new physical effects one can expect in such systems. As an example, we extend the exclusive queueing process that can be viewed as a one-dimensional exclusion process with varying length, by introducing Langmuir kinetics. This process can be interpreted as an effective model for a queue that interacts with other queues by allowing incoming and leaving of customers in the bulk. We find surprising indications for breaking of ergodicity in a certain parameter regime, where the asymptotic growth behavior depends on the initial length. We show that a random walk with site-dependent hopping probabilities exhibits qualitatively the same behavior.

cond-mat.stat-mech

Generalized Exclusion Processes: Transport Coefficients

A class of generalized exclusion processes parametrized by the maximal occupancy, $k\geq 1$, is investigated. For these processes with symmetric nearest-neighbor hopping, we compute the diffusion coefficient and show that it is independent on the spatial dimension. In the extreme cases of $k=1$ (simple symmetric exclusion process) and $k=\infty$ (non-interacting symmetric random walks) the diffusion coefficient is constant; for $2\leq k<\infty$, the diffusion coefficient depends on the density and the maximal occupancy $k$. We also study the evolution of a tagged particle. It exhibits a diffusive behavior which is characterized by the coefficient of self-diffusion which we probe numerically.

cond-mat.stat-mech

Critical behavior of the exclusive queueing process

The exclusive queueing process (EQP) is a generalization of the classical M/M/1 queue. It is equivalent to a totally asymmetric exclusion process (TASEP) of varying length. Here we consider two discrete-time versions of the EQP with parallel and backward-sequential update rules. The phase diagram (with respect to the arrival probability α and the service probability β) is divided into two phases corresponding to divergence and convergence of the system length. We investigate the behavior on the critical line separating these phases. For both update rules, we find diffusive behavior for small output probability (β<β_c). However, for β>β_c it becomes sub-diffusive and nonuniversal: the exponents characterizing the divergence of the system length and the number of customers are found to depend on the update rule. For the backward-update case, they also depend on the hopping parameter p, and remain finite when p is large, indicating a first order transition.

cond-mat.stat-mech

Asymmetric Exclusion Process with Global Hopping

We study a one-dimensional totally asymmetric simple exclusion process with one special site from which particles fly to any empty site (not just to the neighboring site). The system attains a non-trivial stationary state with density profile varying over the spatial extent of the system. The density profile undergoes a non-equilibrium phase transition when the average density passes through the critical value 1-1/[4(1-ln 2)]=0.185277..., viz. in addition to the discontinuity in the vicinity of the special site, a shock wave is formed in the bulk of the system when the density exceeds the critical density.

cond-mat.stat-mech

Entanglement Properties of a Higher-Integer-Spin AKLT Model with Quantum Group Symmetry

We study the entanglement properties of a higher-integer-spin Affleck-Kennedy-Lieb-Tasaki model with quantum group symmetry in the periodic boundary condition. We exactly calculate the finite size correction terms of the entanglement entropies from the double scaling limit. We also evaluate the geometric entanglement, which serves as another measure for entanglement. We find the geometric entanglement reaches its maximum at the isotropic point, and decreases with the increase of the anisotropy. This behavior is similar to that of the entanglement entropies.

cond-mat.stat-mech

Density profiles of the exclusive queueing process

The exclusive queueing process (EQP) incorporates the exclusion principle into classic queueing models. It can be interpreted as an exclusion process of variable system length. Here we extend previous studies of its phase diagram by identifying subphases which can be distinguished by the number of plateaus in the density profiles. Furthermore the influence of different update procedures (parallel, backward-ordered, continuous time) is determined.

cond-mat.stat-mech

Matrix product solution to an inhomogeneous multi-species TASEP

We study a multi-species exclusion process with inhomogeneous hopping rates. This model is equivalent to a Markov chain on the symmetric group that corresponds to a random walk in the affine braid arrangement. We find a matrix product representation for the stationary state of this model. We also show that it is equivalent to a graphical construction proposed by Ayyer and Linusson, which generalizes Ferrari and Martin's construction.

math-ph