arXiv subjects

Chikashi Shinagawa

Publications and source records attributed to Chikashi Shinagawa.

4 recordsLinked to original sources

arXiv2026

Efficient Crystal Structure Prediction Using Universal Neural Network Potential with Diversity Preservation in Genetic Algorithms

Crystal structure prediction (CSP) is crucial for identifying stable crystal structures in given systems and is a prerequisite for computational atomistic simulations. Recent advances in neural network potentials (NNPs) have reduced the computational cost of CSP. However, searching for stable crystal structures across the entire composition space in multicomponent systems remains a significant challenge. Here, we propose an improvement of genetic algorithm (GA) -based CSP method using a universal NNP. Our GA-based methods are designed to efficiently expand convex hull volumes while preserving the diversity of crystal structures. Our hull-informed filtering and elitist-selection procedures incorporate an aging mechanism that prioritizes recently improved compositions. We also employ niching to prevent convergence to a small set of stoichiometries, thereby preserving a diverse, high-quality population. Our evaluation shows that the present method outperforms the symmetry-aware random structure generation and existing CSP methods, achieving a larger convex hull with fewer trials. We demonstrated that our approach, combined with the developed universal NNP (PFP), can accurately reproduce and explore phase diagrams obtained through DFT calculations; this indicates the validity of PFP across a wide range of crystal structures and element combinations. This study, which integrates a universal NNP with a GA-based CSP method, highlights the promise of these methods in materials discovery.

cond-mat.mtrl-sci↗

arXiv2026

Matlantis-PFP v8: Universal Machine Learning Interatomic Potential with Better Experimental Agreements via r2SCAN Functional

Universal Machine Learning Interatomic Potentials (uMLIPs) enable atomistic simulations and high-throughput screening at scales far beyond those accessible with density functional theory (DFT). However, most existing uMLIPs are trained on Perdew--Burke--Ernzerhof (PBE) generalized gradient approximation (GGA) data and are therefore fundamentally limited by PBE-level accuracy. In this paper, we argue that better zero-shot predictions versus experiments must be an explicit design target for uMLIPs and present PFP v8, a uMLIP available on the Matlantis service that overcomes the inherent limitations of the PBE functional by being trained to reproduce the regularized-restored strongly constrained and appropriately normed (r2SCAN) meta-GGA potential-energy surface across a wide range of chemical domains. Without requiring domain-specific fine-tuning, PFP v8 delivers systematically improved agreement with experimental data or high-accuracy references for crystals, molecules, and surfaces, outperforming PBE-based DFT calculations. Crucially, in long-time molecular dynamics simulations that are computationally impractical with DFT, PFP v8 predicts melting points with an average error of approximately 130 K, halving the error relative to PBE-trained models. These results establish that uMLIPs can move beyond the limitations of their training approximations and achieve substantially improved agreement with experiment across diverse chemical domains, further narrowing the gap between simulation and reality.

physics.chem-ph↗

arXiv2022

Towards Universal Neural Network Potential for Material Discovery Applicable to Arbitrary Combination of 45 Elements

Computational material discovery is under intense study owing to its ability to explore the vast space of chemical systems. Neural network potentials (NNPs) have been shown to be particularly effective in conducting atomistic simulations for such purposes. However, existing NNPs are generally designed for narrow target materials, making them unsuitable for broader applications in material discovery. To overcome this issue, we have developed a universal NNP called PreFerred Potential (PFP), which is able to handle any combination of 45 elements. Particular emphasis is placed on the datasets, which include a diverse set of virtual structures used to attain the universality. We demonstrated the applicability of PFP in selected domains: lithium diffusion in LiFeSO${}_4$F, molecular adsorption in metal-organic frameworks, an order-disorder transition of Cu-Au alloys, and material discovery for a Fischer-Tropsch catalyst. They showcase the power of PFP, and this technology provides a highly useful tool for material discovery.

cond-mat.mtrl-sci↗

arXiv2021

Calculations of Real-System Nanoparticles Using Universal Neural Network Potential PFP

It is essential to explore the stability and activity of real-system nanoparticles theoretically. While applications of theoretical methods for this purpose can be found in literature, the expensive computational costs of conventional theoretical methods hinder their massive applications to practical materials design. With the recent development of neural network algorithms along with the advancement of computer systems, neural network potentials have emerged as a promising candidate for the description of a wide range of materials, including metals and molecules, with a reasonable computational time. In this study, we successfully validate a universal neural network potential, PFP, for the description of monometallic Ru nanoparticles, PdRuCu ternary alloy nanoparticles, and the NO adsorption on Rh nanoparticles against first-principles calculations. We further conduct molecular dynamics simulations on the NO-Rh system and challenge the PFP to describe a large, supported Pt nanoparticle system.

cond-mat.mtrl-sci↗