arXiv subjects

Christian Igel

Publications and source records attributed to Christian Igel.

At least 37 records · Page 2Linked to original sources

arXiv2024

Building an AI Support Tool for Real-time Ulcerative Colitis Diagnosis

Ulcerative Colitis (UC) is a chronic inflammatory bowel disease decreasing life quality through symptoms such as bloody diarrhoea and abdominal pain. Endoscopy is a cornerstone of diagnosis and monitoring of UC. The Mayo endoscopic subscore (MES) index is the standard for measuring UC severity during endoscopic evaluation. However, the MES is subject to high inter-observer variability leading to misdiagnosis and suboptimal treatment. We propose using a machine-learning based MES classification system to support the endoscopic process and to mitigate the observer-variability. The system runs real-time in the clinic and augments doctors' decision-making during the endoscopy. This project report outlines the process of designing, creating and evaluating our system. We describe our initial evaluation, which is a combination of a standard non-clinical model test and a first clinical test of the system on a real patient.

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arXiv2024

EC-NAS: Energy Consumption Aware Tabular Benchmarks for Neural Architecture Search

Energy consumption from the selection, training, and deployment of deep learning models has seen a significant uptick recently. This work aims to facilitate the design of energy-efficient deep learning models that require less computational resources and prioritize environmental sustainability by focusing on the energy consumption. Neural architecture search (NAS) benefits from tabular benchmarks, which evaluate NAS strategies cost-effectively through precomputed performance statistics. We advocate for including energy efficiency as an additional performance criterion in NAS. To this end, we introduce an enhanced tabular benchmark encompassing data on energy consumption for varied architectures. The benchmark, designated as EC-NAS, has been made available in an open-source format to advance research in energy-conscious NAS. EC-NAS incorporates a surrogate model to predict energy consumption, aiding in diminishing the energy expenditure of the dataset creation. Our findings emphasize the potential of EC-NAS by leveraging multi-objective optimization algorithms, revealing a balance between energy usage and accuracy. This suggests the feasibility of identifying energy-lean architectures with little or no compromise in performance.

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arXiv2024

Tree Counting by Bridging 3D Point Clouds with Imagery

Accurate and consistent methods for counting trees based on remote sensing data are needed to support sustainable forest management, assess climate change mitigation strategies, and build trust in tree carbon credits. Two-dimensional remote sensing imagery primarily shows overstory canopy, and it does not facilitate easy differentiation of individual trees in areas with a dense canopy and does not allow for easy separation of trees when the canopy is dense. We leverage the fusion of three-dimensional LiDAR measurements and 2D imagery to facilitate the accurate counting of trees. We compare a deep learning approach to counting trees in forests using 3D airborne LiDAR data and 2D imagery. The approach is compared with state-of-the-art algorithms, like operating on 3D point cloud and 2D imagery. We empirically evaluate the different methods on the NeonTreeCount data set, which we use to define a tree-counting benchmark. The experiments show that FuseCountNet yields more accurate tree counts.

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arXiv2023

Predicting urban tree cover from incomplete point labels and limited background information

Trees inside cities are important for the urban microclimate, contributing positively to the physical and mental health of the urban dwellers. Despite their importance, often only limited information about city trees is available. Therefore in this paper, we propose a method for mapping urban trees in high-resolution aerial imagery using limited datasets and deep learning. Deep learning has become best-practice for this task, however, existing approaches rely on large and accurately labelled training datasets, which can be difficult and expensive to obtain. However, often noisy and incomplete data may be available that can be combined and utilized to solve more difficult tasks than those datasets were intended for. This paper studies how to combine accurate point labels of urban trees along streets with crowd-sourced annotations from an open geographic database to delineate city trees in remote sensing images, a task which is challenging even for humans. To that end, we perform semantic segmentation of very high resolution aerial imagery using a fully convolutional neural network. The main challenge is that our segmentation maps are sparsely annotated and incomplete. Small areas around the point labels of the street trees coming from official and crowd-sourced data are marked as foreground class. Crowd-sourced annotations of streets, buildings, etc. define the background class. Since the tree data is incomplete, we introduce a masking to avoid class confusion. Our experiments in Hamburg, Germany, showed that the system is able to produce tree cover maps, not limited to trees along streets, without providing tree delineations. We evaluated the method on manually labelled trees and show that performance drastically deteriorates if the open geographic database is not used.

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arXiv2023

Benchmarking Individual Tree Mapping with Sub-meter Imagery

There is a rising interest in mapping trees using satellite or aerial imagery, but there is no standardized evaluation protocol for comparing and enhancing methods. In dense canopy areas, the high variability of tree sizes and their spatial proximity makes it arduous to define the quality of the predictions. Concurrently, object-centric approaches such as bounding box detection usuallyperform poorly on small and dense objects. It thus remains unclear what is the ideal framework for individual tree mapping, in regards to detection and segmentation approaches, convolutional neural networks and transformers. In this paper, we introduce an evaluation framework suited for individual tree mapping in any physical environment, with annotation costs and applicative goals in mind. We review and compare different approaches and deep architectures, and introduce a new method that we experimentally prove to be a good compromise between segmentation and detection.

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arXiv2023

Deep Learning Based 3D Point Cloud Regression for Estimating Forest Biomass

Quantification of forest biomass stocks and their dynamics is important for implementing effective climate change mitigation measures. The knowledge is needed, e.g., for local forest management, studying the processes driving af-, re-, and deforestation, and can improve the accuracy of carbon-accounting. Remote sensing using airborne LiDAR can be used to perform these measurements of vegetation structure at large scale. We present deep learning systems for predicting wood volume, above-ground biomass (AGB), and subsequently above-ground carbon stocks directly from airborne LiDAR point clouds. We devise different neural network architectures for point cloud regression and evaluate them on remote sensing data of areas for which AGB estimates have been obtained from field measurements in the Danish national forest inventory. Our adaptation of Minkowski convolutional neural networks for regression gave the best results. The deep neural networks produced significantly more accurate wood volume, AGB, and carbon stock estimates compared to state-of-the-art approaches operating on basic statistics of the point clouds. In contrast to other methods, the proposed deep learning approach does not require a digital terrain model. We expect this finding to have a strong impact on LiDAR-based analyses of biomass dynamics.

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arXiv2023

Chebyshev-Cantelli PAC-Bayes-Bennett Inequality for the Weighted Majority Vote

We present a new second-order oracle bound for the expected risk of a weighted majority vote. The bound is based on a novel parametric form of the Chebyshev- Cantelli inequality (a.k.a. one-sided Chebyshev's), which is amenable to efficient minimization. The new form resolves the optimization challenge faced by prior oracle bounds based on the Chebyshev-Cantelli inequality, the C-bounds [Germain et al., 2015], and, at the same time, it improves on the oracle bound based on second order Markov's inequality introduced by Masegosa et al. [2020]. We also derive a new concentration of measure inequality, which we name PAC-Bayes-Bennett, since it combines PAC-Bayesian bounding with Bennett's inequality. We use it for empirical estimation of the oracle bound. The PAC-Bayes-Bennett inequality improves on the PAC-Bayes-Bernstein inequality of Seldin et al. [2012]. We provide an empirical evaluation demonstrating that the new bounds can improve on the work of Masegosa et al. [2020]. Both the parametric form of the Chebyshev-Cantelli inequality and the PAC-Bayes-Bennett inequality may be of independent interest for the study of concentration of measure in other domains.

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arXiv2023

BuildSeg: A General Framework for the Segmentation of Buildings

Building segmentation from aerial images and 3D laser scanning (LiDAR) is a challenging task due to the diversity of backgrounds, building textures, and image quality. While current research using different types of convolutional and transformer networks has considerably improved the performance on this task, even more accurate segmentation methods for buildings are desirable for applications such as automatic mapping. In this study, we propose a general framework termed \emph{BuildSeg} employing a generic approach that can be quickly applied to segment buildings. Different data sources were combined to increase generalization performance. The approach yields good results for different data sources as shown by experiments on high-resolution multi-spectral and LiDAR imagery of cities in Norway, Denmark and France. We applied ConvNeXt and SegFormer based models on the high resolution aerial image dataset from the MapAI-competition. The methods achieved an IOU of 0.7902 and a boundary IOU of 0.6185. We used post-processing to account for the rectangular shape of the objects. This increased the boundary IOU from 0.6185 to 0.6189.

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arXiv2022

LR-CSNet: Low-Rank Deep Unfolding Network for Image Compressive Sensing

Deep unfolding networks (DUNs) have proven to be a viable approach to compressive sensing (CS). In this work, we propose a DUN called low-rank CS network (LR-CSNet) for natural image CS. Real-world image patches are often well-represented by low-rank approximations. LR-CSNet exploits this property by adding a low-rank prior to the CS optimization task. We derive a corresponding iterative optimization procedure using variable splitting, which is then translated to a new DUN architecture. The architecture uses low-rank generation modules (LRGMs), which learn low-rank matrix factorizations, as well as gradient descent and proximal mappings (GDPMs), which are proposed to extract high-frequency features to refine image details. In addition, the deep features generated at each reconstruction stage in the DUN are transferred between stages to boost the performance. Our extensive experiments on three widely considered datasets demonstrate the promising performance of LR-CSNet compared to state-of-the-art methods in natural image CS.

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arXiv2022

The Liver Tumor Segmentation Benchmark (LiTS)

In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LiTS), which was organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 and the International Conferences on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2017 and 2018. The image dataset is diverse and contains primary and secondary tumors with varied sizes and appearances with various lesion-to-background levels (hyper-/hypo-dense), created in collaboration with seven hospitals and research institutions. Seventy-five submitted liver and liver tumor segmentation algorithms were trained on a set of 131 computed tomography (CT) volumes and were tested on 70 unseen test images acquired from different patients. We found that not a single algorithm performed best for both liver and liver tumors in the three events. The best liver segmentation algorithm achieved a Dice score of 0.963, whereas, for tumor segmentation, the best algorithms achieved Dices scores of 0.674 (ISBI 2017), 0.702 (MICCAI 2017), and 0.739 (MICCAI 2018). Retrospectively, we performed additional analysis on liver tumor detection and revealed that not all top-performing segmentation algorithms worked well for tumor detection. The best liver tumor detection method achieved a lesion-wise recall of 0.458 (ISBI 2017), 0.515 (MICCAI 2017), and 0.554 (MICCAI 2018), indicating the need for further research. LiTS remains an active benchmark and resource for research, e.g., contributing the liver-related segmentation tasks in \url{http://medicaldecathlon.com/}. In addition, both data and online evaluation are accessible via \url{www.lits-challenge.com}.

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arXiv2022

Self-Supervised Speech Representation Learning: A Review

Although supervised deep learning has revolutionized speech and audio processing, it has necessitated the building of specialist models for individual tasks and application scenarios. It is likewise difficult to apply this to dialects and languages for which only limited labeled data is available. Self-supervised representation learning methods promise a single universal model that would benefit a wide variety of tasks and domains. Such methods have shown success in natural language processing and computer vision domains, achieving new levels of performance while reducing the number of labels required for many downstream scenarios. Speech representation learning is experiencing similar progress in three main categories: generative, contrastive, and predictive methods. Other approaches rely on multi-modal data for pre-training, mixing text or visual data streams with speech. Although self-supervised speech representation is still a nascent research area, it is closely related to acoustic word embedding and learning with zero lexical resources, both of which have seen active research for many years. This review presents approaches for self-supervised speech representation learning and their connection to other research areas. Since many current methods focus solely on automatic speech recognition as a downstream task, we review recent efforts on benchmarking learned representations to extend the application beyond speech recognition.

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arXiv2022

Remember to correct the bias when using deep learning for regression!

When training deep learning models for least-squares regression, we cannot expect that the training error residuals of the final model, selected after a fixed training time or based on performance on a hold-out data set, sum to zero. This can introduce a systematic error that accumulates if we are interested in the total aggregated performance over many data points. We suggest to adjust the bias of the machine learning model after training as a default postprocessing step, which efficiently solves the problem. The severeness of the error accumulation and the effectiveness of the bias correction is demonstrated in exemplary experiments.

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arXiv2022

A Brief Overview of Unsupervised Neural Speech Representation Learning

Unsupervised representation learning for speech processing has matured greatly in the last few years. Work in computer vision and natural language processing has paved the way, but speech data offers unique challenges. As a result, methods from other domains rarely translate directly. We review the development of unsupervised representation learning for speech over the last decade. We identify two primary model categories: self-supervised methods and probabilistic latent variable models. We describe the models and develop a comprehensive taxonomy. Finally, we discuss and compare models from the two categories.

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arXiv2022

Information Bottleneck: Exact Analysis of (Quantized) Neural Networks

The information bottleneck (IB) principle has been suggested as a way to analyze deep neural networks. The learning dynamics are studied by inspecting the mutual information (MI) between the hidden layers and the input and output. Notably, separate fitting and compression phases during training have been reported. This led to some controversy including claims that the observations are not reproducible and strongly dependent on the type of activation function used as well as on the way the MI is estimated. Our study confirms that different ways of binning when computing the MI lead to qualitatively different results, either supporting or refusing IB conjectures. To resolve the controversy, we study the IB principle in settings where MI is non-trivial and can be computed exactly. We monitor the dynamics of quantized neural networks, that is, we discretize the whole deep learning system so that no approximation is required when computing the MI. This allows us to quantify the information flow without measurement errors. In this setting, we observed a fitting phase for all layers and a compression phase for the output layer in all experiments; the compression in the hidden layers was dependent on the type of activation function. Our study shows that the initial IB results were not artifacts of binning when computing the MI. However, the critical claim that the compression phase may not be observed for some networks also holds true.

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arXiv2021

Do We Still Need Automatic Speech Recognition for Spoken Language Understanding?

Spoken language understanding (SLU) tasks are usually solved by first transcribing an utterance with automatic speech recognition (ASR) and then feeding the output to a text-based model. Recent advances in self-supervised representation learning for speech data have focused on improving the ASR component. We investigate whether representation learning for speech has matured enough to replace ASR in SLU. We compare learned speech features from wav2vec 2.0, state-of-the-art ASR transcripts, and the ground truth text as input for a novel speech-based named entity recognition task, a cardiac arrest detection task on real-world emergency calls and two existing SLU benchmarks. We show that learned speech features are superior to ASR transcripts on three classification tasks. For machine translation, ASR transcripts are still the better choice. We highlight the intrinsic robustness of wav2vec 2.0 representations to out-of-vocabulary words as key to better performance.

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arXiv2021

Multimodal Variational Autoencoders for Semi-Supervised Learning: In Defense of Product-of-Experts

Multimodal generative models should be able to learn a meaningful latent representation that enables a coherent joint generation of all modalities (e.g., images and text). Many applications also require the ability to accurately sample modalities conditioned on observations of a subset of the modalities. Often not all modalities may be observed for all training data points, so semi-supervised learning should be possible. In this study, we propose a novel product-of-experts (PoE) based variational autoencoder that have these desired properties. We benchmark it against a mixture-of-experts (MoE) approach and an approach of combining the modalities with an additional encoder network. An empirical evaluation shows that the PoE based models can outperform the contrasted models. Our experiments support the intuition that PoE models are more suited for a conjunctive combination of modalities.

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arXiv2021

Do End-to-End Speech Recognition Models Care About Context?

The two most common paradigms for end-to-end speech recognition are connectionist temporal classification (CTC) and attention-based encoder-decoder (AED) models. It has been argued that the latter is better suited for learning an implicit language model. We test this hypothesis by measuring temporal context sensitivity and evaluate how the models perform when we constrain the amount of contextual information in the audio input. We find that the AED model is indeed more context sensitive, but that the gap can be closed by adding self-attention to the CTC model. Furthermore, the two models perform similarly when contextual information is constrained. Finally, in contrast to previous research, our results show that the CTC model is highly competitive on WSJ and LibriSpeech without the help of an external language model.

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arXiv2021

On Scaling Contrastive Representations for Low-Resource Speech Recognition

Recent advances in self-supervised learning through contrastive training have shown that it is possible to learn a competitive speech recognition system with as little as 10 minutes of labeled data. However, these systems are computationally expensive since they require pre-training followed by fine-tuning in a large parameter space. We explore the performance of such systems without fine-tuning by training a state-of-the-art speech recognizer on the fixed representations from the computationally demanding wav2vec 2.0 framework. We find performance to decrease without fine-tuning and, in the extreme low-resource setting, wav2vec 2.0 is inferior to its predecessor. In addition, we find that wav2vec 2.0 representations live in a low dimensional subspace and that decorrelating the features of the representations can stabilize training of the automatic speech recognizer. Finally, we propose a bidirectional extension to the original wav2vec framework that consistently improves performance.

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