arXiv subjects

Christian Wagner

Publications and source records attributed to Christian Wagner.

At least 37 records · Page 2Linked to original sources

arXiv2024

Margination of artificially stiffened red blood cells

Margination, a fundamental process in which leukocytes migrate from the flowing blood to the vessel wall, is well-documented in physiology. However, it is still an open question on how the differences in cell size and stiffness of white and red cells contribute to this phenomenon. To investigate the specific influence of cell stiffness, we conduct experimental and numerical studies on the segregation of a binary mixture of artificially stiffened red blood cells within a suspension of healthy cells. The resulting distribution of stiffened cells within the channel is found to depend on the channel geometry, as demonstrated with slit, rectangular, and cylindrical cross-sections. Notably, an unexpected central peak in the distribution of stiffened RBCs, accompanied by fourfold peaks at the corners, emerges in agreement with simulations. Our results unveil a non-monotonic variation in segregation/margination concerning hematocrit and flow rate, challenging the prevailing belief that higher flow rates lead to enhanced margination.

cond-mat.soft↗

arXiv2024

Deposit of Red Blood Cells at low concentrations in evaporating droplets: central edge growth and potential applications

Evaporation of blood droplets and diluted blood samples is a topic of intensive research, as it is seen as a possible low-cost tool for diagnosis. So far, samples with volume fraction down to a few percents of Red Blood Cells (RBCs) have been studied, and those were reportedly dominated by a ``coffee-ring'' deposit. In this study, samples with lower volume fractions have been used in order to study the growth of the evaporative deposit from sessile droplets more in details. We observed that blood samples and salt solutions with less than 1\% volume fraction of RBCs are dominated by a central deposit. We characterized the growth process of this central deposit by evaporating elongated drops, and determined that it is consistent with the Kardar-Parisi-Zhang process in the presence of quenched disorder. Our results showed a sensitivity of this deposit size to the fibrinogen concentration and shape of the RBCs, meaning that this parameter could be used to develop a new and cost-effective clinical marker for inflammation and RBC deformation.

cond-mat.soft↗

arXiv2024

MrRegNet: Multi-resolution Mask Guided Convolutional Neural Network for Medical Image Registration with Large Deformations

Deformable image registration (alignment) is highly sought after in numerous clinical applications, such as computer aided diagnosis and disease progression analysis. Deep Convolutional Neural Network (DCNN)-based image registration methods have demonstrated advantages in terms of registration accuracy and computational speed. However, while most methods excel at global alignment, they often perform worse in aligning local regions. To address this challenge, this paper proposes a mask-guided encoder-decoder DCNN-based image registration method, named as MrRegNet. This approach employs a multi-resolution encoder for feature extraction and subsequently estimates multi-resolution displacement fields in the decoder to handle the substantial deformation of images. Furthermore, segmentation masks are employed to direct the model's attention toward aligning local regions. The results show that the proposed method outperforms traditional methods like Demons and a well-known deep learning method, VoxelMorph, on a public 3D brain MRI dataset (OASIS) and a local 2D brain MRI dataset with large deformations. Importantly, the image alignment accuracies are significantly improved at local regions guided by segmentation masks. Github link:https://github.com/ruizhe-l/MrRegNet.

eess.IV↗

arXiv2024

The Joint Weighted Average (JWA) Operator

Information aggregation is a vital tool for human and machine decision making in the presence of uncertainty. Traditionally, approaches to aggregation broadly diverge into two categories, those which attribute a worth or weight to information sources and those which attribute said worth to the evidence arising from said sources. The latter is pervasive in the physical sciences, underpinning linear order statistics and enabling non-linear aggregation. The former is popular in the social sciences, providing interpretable insight on the sources. While prior work has identified the need to apply both approaches simultaneously, it has yet to conceptually integrate both approaches and provide a semantic interpretation of the arising aggregation approach. Here, we conceptually integrate both approaches in a novel joint weighted averaging operator. We leverage compositional geometry to underpin this integration, showing how it provides a systematic basis for the combination of weighted aggregation operators--which has thus far not been considered in the literature. We proceed to show how the resulting operator systematically integrates a priori beliefs about the worth of both sources and evidence, reflecting the semantic integration of both weighting strategies. We conclude and highlight the potential of the operator across disciplines, from machine learning to psychology.

cs.AI↗

arXiv2024

Gradient-based Fuzzy System Optimisation via Automatic Differentiation -- FuzzyR as a Use Case

Since their introduction, fuzzy sets and systems have become an important area of research known for its versatility in modelling, knowledge representation and reasoning, and increasingly its potential within the context explainable AI. While the applications of fuzzy systems are diverse, there has been comparatively little advancement in their design from a machine learning perspective. In other words, while representations such as neural networks have benefited from a boom in learning capability driven by an increase in computational performance in combination with advances in their training mechanisms and available tool, in particular gradient descent, the impact on fuzzy system design has been limited. In this paper, we discuss gradient-descent-based optimisation of fuzzy systems, focussing in particular on automatic differentiation -- crucial to neural network learning -- with a view to free fuzzy system designers from intricate derivative computations, allowing for more focus on the functional and explainability aspects of their design. As a starting point, we present a use case in FuzzyR which demonstrates how current fuzzy inference system implementations can be adjusted to leverage powerful features of automatic differentiation tools sets, discussing its potential for the future of fuzzy system design.

cs.AI↗

arXiv2023

The electrostatic potential of atomic nanostructures on a metal surface

The discrete and charge-separated nature of matter - electrons and nuclei - results in local electrostatic fields that are ubiquitous in nanoscale structures and are determined by their shape, material, and environment. Such fields are relevant in catalysis, nanoelectronics and quantum nanoscience, and their control will become even more important as the devices in question reach few-nanometres dimensions. Surface-averaging techniques provide only limited experimental access to these potentials at and around individual nanostructures. Here, we use scanning quantum dot microscopy to investigate how electric potentials evolve as nanostructures are built up atom by atom. We image the potential over adatoms, chains, and clusters of Ag and Au atoms on Ag(111) and quantify their surface dipole moments. By focusing on the total charge density, these data establish a new benchmark for ab initio calculations. Indeed, our density functional theory calculations not only show an impressive agreement with experiment, but also allow a deeper analysis of the mechanisms behind the dipole formation, their dependence on fundamental atomic properties and on the atomic configuration of the nanostructures. This allows us to formulate an intuitive picture of the basic mechanisms behind dipole formation, which enables better design choices for future nanoscale systems such as single atom catalysts.

cond-mat.mtrl-sci↗

arXiv2023

The Energy Prediction Smart-Meter Dataset: Analysis of Previous Competitions and Beyond

This paper presents the real-world smart-meter dataset and offers an analysis of solutions derived from the Energy Prediction Technical Challenges, focusing primarily on two key competitions: the IEEE Computational Intelligence Society (IEEE-CIS) Technical Challenge on Energy Prediction from Smart Meter data in 2020 (named EP) and its follow-up challenge at the IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) in 2021 (named as XEP). These competitions focus on accurate energy consumption forecasting and the importance of interpretability in understanding the underlying factors. The challenge aims to predict monthly and yearly estimated consumption for households, addressing the accurate billing problem with limited historical smart meter data. The dataset comprises 3,248 smart meters, with varying data availability ranging from a minimum of one month to a year. This paper delves into the challenges, solutions and analysing issues related to the provided real-world smart meter data, developing accurate predictions at the household level, and introducing evaluation criteria for assessing interpretability. Additionally, this paper discusses aspects beyond the competitions: opportunities for energy disaggregation and pattern detection applications at the household level, significance of communicating energy-driven factors for optimised billing, and emphasising the importance of responsible AI and data privacy considerations. These aspects provide insights into the broader implications and potential advancements in energy consumption prediction. Overall, these competitions provide a dataset for residential energy research and serve as a catalyst for exploring accurate forecasting, enhancing interpretability, and driving progress towards the discussion of various aspects such as energy disaggregation, demand response programs or behavioural interventions.

cs.LG↗

arXiv2023

Early stage of Erythrocyte Sedimentation Rate test: Fracture of a high-volume-fraction gel

Erythrocyte Sedimentation Rate (ESR) is a clinical parameter used as a non-specific marker for inflammation, and recent studies have shown that it is linked to the collapse of the gel formed by red blood cells (RBCs) at physiological hematocrits (i.e. RBC volume fraction). Previous research has suggested that the delay time before the sedimentation process is related to the formation of fractures in the gel. Moreover, RBC gels present specific properties due to the anisotropic shape and flexibility of the RBCs. Namely, the onset of the collapse is reached earlier and the settling velocity of the gel increases with increasing attraction between the RBCs, while gel of spherical particles show the opposite trend. Here, we report experimental observations of the gel structure during this onset and suggest an equation modeling this initial process as fracturing of the gel. We demonstrate that this equation provides a model for the motion of the interface between blood plasma and the RBC gel, along the whole time span. We also observe that the increase in the attraction between the RBCs modifies the density of fractures in the gel, which explains why the gel displays a decrease in delay time when the aggregation energy between the RBCs increases. Our work uncovers the detailed physical mechanism underlying the ESR and provides insights into the fracture dynamics of a RBC gel. These results can improve the accuracy of clinical measurements.

cond-mat.soft↗

arXiv2023

Cell-free layer development and spatial organization of healthy and rigid red blood cells in a microfluidic bifurcation

Bifurcations and branches in the microcirculation dramatically affect blood flow as they determine the spatiotemporal organization of red blood cells (RBCs). Such changes in vessel geometries can further influence the formation of a cell-free layer (CFL) close to the vessel walls. Biophysical cell properties, such as their deformability, which is impaired in various diseases, are often thought to impact blood flow and affect the distribution of flowing RBCs. This study investigates the flow behavior of healthy and artificially hardened RBCs in a bifurcating microfluidic T-junction. We determine the RBC distribution across the channel width at multiple positions before and after the bifurcation. Thus, we reveal distinct focusing profiles in the feeding mother channel for rigid and healthy RBCs that dramatically impact the cell organization in the successive daughter channels. Moreover, we experimentally show how the characteristic asymmetric CFLs in the daughter vessels develop along their flow direction. Complimentary numerical simulations indicate that the buildup of the CFL is faster for healthy than for rigid RBCs. Our results provide fundamental knowledge to understand the partitioning of rigid RBC as a model of cells with pathologically impaired deformability in complex in vitro networks.

physics.bio-ph↗

arXiv2023

Cell-free layer of red blood cells in a constricted microfluidic channel under steady and time-dependent flow conditions

Constricted blood vessels in the circulatory system can severely impact the spatiotemporal organization of red blood cells (RBCs) causing various physiological complications. In lab-on-a-chip applications, constrictions are commonly used for cell sorting and plasma separation based on the formation of a cell-free layer (CFL) at the channel boundary. However, such devices usually employ a steady flow, although time-dependent and pulsatile flow conditions enhance many microfluidic operations and possess significant relevance for in-vitro studies under physiologically relevant flow conditions. In this study, we examine the CFL dynamics in a constricted microchannel under steady and time-dependent flow. Therefore, we develop an image processing routine that allows us to resolve the spatiotemporal evolution of the CFL under time-dependent driving of the flow with arbitrary waveform. First, we perform a characterization of the CFL and the cell-free area (CFA) before and after the constriction under steady flow conditions. Second, we employ our method to study the effect of the hematocrit and the parameters of the flow modulations on the CFL and CFA using a sinusoidal pressure profile. Our results highlight the dominant effects of the RBC concentration and the amplitude of the applied pressure signal predominantly on the CFA dynamics. Moreover, we observe a dampening of the CFA amplitude with increasing hematocrit or decreasing pressure amplitude, and a peculiar phase shift of the CFA oscillations pre- and post-constriction. Complementary numerical simulations reveal how the time-dependent CFA dynamics are coupled with the dynamically changing flow field at the constriction. Due to the increasing demand for investigations and applications under time-dependent flow conditions, our study provides crucial insight into the flow behavior of complex fluids in unsteady microscale flows.

physics.flu-dyn↗

arXiv2023

Towards Handling Uncertainty-at-Source in AI -- A Review and Next Steps for Interval Regression

Most of statistics and AI draw insights through modelling discord or variance between sources of information (i.e., inter-source uncertainty). Increasingly, however, research is focusing upon uncertainty arising at the level of individual measurements (i.e., within- or intra-source), such as for a given sensor output or human response. Here, adopting intervals rather than numbers as the fundamental data-type provides an efficient, powerful, yet challenging way forward -- offering systematic capture of uncertainty-at-source, increasing informational capacity, and ultimately potential for insight. Following recent progress in the capture of interval-valued data, including from human participants, conducting machine learning directly upon intervals is a crucial next step. This paper focuses on linear regression for interval-valued data as a recent growth area, providing an essential foundation for broader use of intervals in AI. We conduct an in-depth analysis of state-of-the-art methods, elucidating their behaviour, advantages, and pitfalls when applied to datasets with different properties. Specific emphasis is given to the challenge of preserving mathematical coherence -- i.e., ensuring that models maintain fundamental mathematical properties of intervals throughout -- and the paper puts forward extensions to an existing approach to guarantee this. Carefully designed experiments, using both synthetic and real-world data, are conducted -- with findings presented alongside novel visualizations for interval-valued regression outputs, designed to maximise model interpretability. Finally, the paper makes recommendations concerning method suitability for data sets with specific properties and highlights remaining challenges and important next steps for developing AI with the capacity to handle uncertainty-at-source.

cs.LG↗

arXiv2022

Disentangling the Complex Electronic Structure of an Adsorbed Nanographene: Cycloarene C108

We combine low-temperature scanning tunneling spectroscopy, CO functionalized tips and algorithmic data analysis to investigate the electronic structure of the molecular cycloarene C108 (graphene nanoring) adsorbed on a Au(111) surface. We demonstrate that CO functionalized tips enhance the visibility of molecular resonances, both in differential conductance spectra and in real-space topographic images without introducing spurious artifacts. Comparing our experimental data with ab-initio density functional theory reveals a remarkably precise agreement of the molecular orbitals and enables us to disentangle close-lying molecular states only separated by 50 meV at an energy of 2 eV below the Fermi level. We propose this combination of techniques as a promising new route for a precise characterization of complex molecules and other physical entities which have electronic resonances in the tip-sample junction.

cond-mat.mes-hall↗

arXiv2022

Quantification of Robotic Surgeries with Vision-Based Deep Learning

Surgery is a high-stakes domain where surgeons must navigate critical anatomical structures and actively avoid potential complications while achieving the main task at hand. Such surgical activity has been shown to affect long-term patient outcomes. To better understand this relationship, whose mechanics remain unknown for the majority of surgical procedures, we hypothesize that the core elements of surgery must first be quantified in a reliable, objective, and scalable manner. We believe this is a prerequisite for the provision of surgical feedback and modulation of surgeon performance in pursuit of improved patient outcomes. To holistically quantify surgeries, we propose a unified deep learning framework, entitled Roboformer, which operates exclusively on videos recorded during surgery to independently achieve multiple tasks: surgical phase recognition (the what of surgery), gesture classification and skills assessment (the how of surgery). We validated our framework on four video-based datasets of two commonly-encountered types of steps (dissection and suturing) within minimally-invasive robotic surgeries. We demonstrated that our framework can generalize well to unseen videos, surgeons, medical centres, and surgical procedures. We also found that our framework, which naturally lends itself to explainable findings, identified relevant information when achieving a particular task. These findings are likely to instill surgeons with more confidence in our framework's behaviour, increasing the likelihood of clinical adoption, and thus paving the way for more targeted surgical feedback.

cs.RO↗

arXiv2021

Red blood cell shape transitions and dynamics in time-dependent capillary flows

The dynamics of single red blood cells (RBCs) determine microvascular blood flow by adapting their shape to the flow conditions in the narrow vessels. In this study, we explore the dynamics and shape transitions of RBCs on the cellular scale under confined and unsteady flow conditions using a combination of microfluidic experiments and numerical simulations. Tracking RBCs in a comoving frame in time-dependent flows reveals that the mean transition time from the symmetric croissant to the off-centered, non-symmetric slipper shape is significantly faster than the opposite shape transition, which exhibits pronounced cell rotations. Complementary simulations indicate that these dynamics depend on the orientation of the RBC membrane in the channel during the time-dependent flow. Moreover, we show how the tank-treading movement of slipper-shaped RBCs in combination with the narrow channel leads to oscillations of the cell's center of mass. The frequency of these oscillations depends on the cell velocity, the viscosity of the surrounding fluid, and the cytosol viscosity. These results provide a potential framework to identify and study pathological changes of RBC properties.

physics.bio-ph↗

arXiv2021

Erythrocyte sedimentation: Effect of aggregation energy on gel structure during collapse

The erythrocyte (or red blood cell) sedimentation rate (ESR) is commonly interpreted as a measure of cell aggregation and as a biomarker of inflammation. It is well known that an increase of fibrinogen concentration, an aggregation-inducing protein for erythrocytes, leads to an increase of the sedimentation rate of erythrocytes, which is generally explained through the formation and faster settling of large disjoint aggregates. However, many aspects of erythrocyte sedimentation conform well with the collapse of a colloidal gel rather than with the sedimentation of disjoint aggregates. Using experiments and cell-level numerical simulations, we systematically investigate the dependence of ESR on fibrinogen concentration and its relation to the microstructure of the gel-like erythrocyte suspension. We show that for physiological aggregation interactions, an increase in the attraction strength between cells results in a cell network with larger void spaces. This geometrical change in the network structure occurs due to anisotropic shape and deformability of erythrocytes and leads to an increased gel permeability and faster sedimentation. Our results provide a comprehensive relation between the ESR and the cell-level structure of erythrocyte suspensions and support the gel hypothesis in the interpretation of blood sedimentation.

cond-mat.soft↗

arXiv2021

Erythrocyte sedimentation: Fracture and collapse of a high-volume-fraction soft-colloid gel

The erythrocyte sedimentation rate is one of the oldest medical diagnostic methods whose physical mechanisms remain debatable up to date. Using both light microscopy and mesoscale cell-level simulations, we show that erythrocytes form a soft-colloid gel. Furthermore, the high volume fraction of erythrocytes, their deformability, and weak attraction lead to unusual properties of this gel. A theoretical model for the gravitational collapse is developed, whose predictions are in agreement with detailed macroscopic measurements of the interface velocity.

cond-mat.soft↗

arXiv2021

Image Augmentation Using a Task Guided Generative Adversarial Network for Age Estimation on Brain MRI

Brain age estimation based on magnetic resonance imaging (MRI) is an active research area in early diagnosis of some neurodegenerative diseases (e.g. Alzheimer, Parkinson, Huntington, etc.) for elderly people or brain underdevelopment for the young group. Deep learning methods have achieved the state-of-the-art performance in many medical image analysis tasks, including brain age estimation. However, the performance and generalisability of the deep learning model are highly dependent on the quantity and quality of the training data set. Both collecting and annotating brain MRI data are extremely time-consuming. In this paper, to overcome the data scarcity problem, we propose a generative adversarial network (GAN) based image synthesis method. Different from the existing GAN-based methods, we integrate a task-guided branch (a regression model for age estimation) to the end of the generator in GAN. By adding a task-guided loss to the conventional GAN loss, the learned low-dimensional latent space and the synthesised images are more task-specific. It helps to boost the performance of the down-stream task by combining the synthesised images and real images for model training. The proposed method was evaluated on a public brain MRI data set for age estimation. Our proposed method outperformed (statistically significant) a deep convolutional neural network based regression model and the GAN-based image synthesis method without the task-guided branch. More importantly, it enables the identification of age-related brain regions in the image space. The code is available on GitHub (https://github.com/ruizhe-l/tgb-gan).

eess.IV↗

arXiv2021

Capturing Richer Information -- On Establishing the Validity of an Interval-Valued Survey Response Mode

Obtaining quantitative survey responses that are both accurate and informative is crucial to a wide range of fields. Traditional and ubiquitous response formats such as Likert and Visual Analogue Scales require condensation of responses into discrete point values - but sometimes a range of options may better represent the correct answer. In this paper, we propose an efficient interval-valued response mode, whereby responses are made by marking an ellipse along a continuous scale. We discuss its potential to capture and quantify valuable information that would be lost using conventional approaches, while preserving a high degree of response-efficiency. The information captured by the response interval may represent a possible response range - i.e., a conjunctive set, such as the real numbers between three and six. Alternatively, it may reflect uncertainty in respect to a distinct response - i.e., a disjunctive set, such as a confidence interval. We then report a validation study, utilizing our recently introduced open-source software (DECSYS) to explore how interval-valued survey responses reflect experimental manipulations of several factors hypothesised to influence interval width, across multiple contexts. Results consistently indicate that respondents used interval widths effectively, and subjective participant feedback was also positive. We present this as initial empirical evidence for the efficacy and value of interval-valued response capture. Interestingly, our results also provide insight into respondents' reasoning about the different aforementioned types of intervals - we replicate a tendency towards overconfidence for those representing epistemic uncertainty (i.e., disjunctive sets), but find intervals representing inherent range (i.e., conjunctive sets) to be well-calibrated.

cs.HC↗