arXiv subjects

Christof Koch

Publications and source records attributed to Christof Koch.

12 recordsLinked to original sources

arXiv2024

Dissociating Artificial Intelligence from Artificial Consciousness

Developments in machine learning and computing power suggest that artificial general intelligence is within reach. This raises the question of artificial consciousness: if a computer were to be functionally equivalent to a human, being able to do all we do, would it experience sights, sounds, and thoughts, as we do when we are conscious? Answering this question in a principled manner can only be done on the basis of a theory of consciousness that is grounded in phenomenology and that states the necessary and sufficient conditions for any system, evolved or engineered, to support subjective experience. Here we employ Integrated Information Theory (IIT), which provides principled tools to determine whether a system is conscious, to what degree, and the content of its experience. We consider pairs of systems constituted of simple Boolean units, one of which -- a basic stored-program computer -- simulates the other with full functional equivalence. By applying the principles of IIT, we demonstrate that (i) two systems can be functionally equivalent without being phenomenally equivalent, and (ii) that this conclusion is not dependent on the simulated system's function. We further demonstrate that, according to IIT, it is possible for a digital computer to simulate our behavior, possibly even by simulating the neurons in our brain, without replicating our experience. This contrasts sharply with computational functionalism, the thesis that performing computations of the right kind is necessary and sufficient for consciousness.

cs.AI↗

arXiv2022

Sharing Neurophysiology Data from the Allen Brain Observatory: Lessons Learned

Making all data for any observation or experiment openly available is a defining feature of empirical science (e.g., nullius in verba, the motto of the Royal Society). It enhances transparency, reproducibility, and societal trust. While embraced in spirit by many, in practice open data sharing remains the exception in contemporary systems neuroscience. Here, we take stock of the Allen Brain Observatory, an effort to share data and metadata associated with surveys of neuronal activity in the visual system of laboratory mice. The data from these surveys have been used to produce new discoveries, to validate computational algorithms, and as a benchmark for comparison with other data, resulting in over 100 publications and preprints to date. We distill some of the lessons learned about open surveys and data reuse, including remaining barriers to data sharing and what might be done to address these.

q-bio.NC↗

arXiv2022

Only what exists can cause: An intrinsic powers view of free will

This essay addresses the implications of integrated information theory (IIT) for free will. IIT is a theory of what consciousness is and of how its presence and quality can be accounted for in physical terms. According to IIT, the presence of consciousness is accounted for by a maximum of cause-effect power in the brain. Moreover, the way an experience feels is accounted for by how that cause-effect power is structured. If IIT is right, we do have free will in a genuine sense: we have alternatives, reasons, and values, we make decisions, and we-not our neurons or atoms-are the cause of our willed actions and bear responsibility for them. IIT's argument for genuine free will hinges on the proper understanding of consciousness as intrinsic existence, captured by its intrinsic powers ontology: what exists absolutely, in physical terms, are intrinsic entities, and only what exists can cause.

q-bio.NC↗

arXiv2016

A Computational Analysis of the Function of Three Inhibitory Cell Types in Contextual Visual Processing

Most cortical inhibitory cell types exclusively express one of three genes, parvalbumin, somatostatin and 5HT3a. The visual responses of cortical neurons are affected not only by local cues, but also by visual context. As the inhibitory neuron types have distinctive synaptic sources and targets over different spatial extents and from different areas, we conjecture that they possess distinct roles in contextual processing. We use modeling to relate structural information to function in primary visual cortex (V1) of the mouse, and investigate their role in contextual visual processing. Our findings are threefold. First, the inhibition mediated by parvalbumin positive (PV) cells mediates local processing and could underlie their role in boundary detection. Second, the inhibition mediated by somatostatin-positive (SST) cells facilitates longer range spatial competition among receptive fields. Third, non-specific top-down modulation to interneurons expressing vasoactive intestinal polypeptide (VIP), a subclass of 5HT3a neurons, can selectively enhance V1 responses.

q-bio.NC↗

arXiv2015

Emergence of slow-switching assemblies in structured neuronal networks

Unraveling the interplay between connectivity and spatio-temporal dynamics in neuronal networks is a key step to advance our understanding of neuronal information processing. Here we investigate how particular features of network connectivity underpin the propensity of neural networks to generate slow-switching assembly (SSA) dynamics, i.e., sustained epochs of increased firing within assemblies of neurons which transition slowly between different assemblies throughout the network. We show that the emergence of SSA activity is linked to spectral properties of the asymmetric synaptic weight matrix. In particular, the leading eigenvalues that dictate the slow dynamics exhibit a gap with respect to the bulk of the spectrum, and the associated Schur vectors exhibit a measure of block-localization on groups of neurons, thus resulting in coherent dynamical activity on those groups. Through simple rate models, we gain analytical understanding of the origin and importance of the spectral gap, and use these insights to develop new network topologies with alternative connectivity paradigms which also display SSA activity. Specifically, SSA dynamics involving excitatory and inhibitory neurons can be achieved by modifying the connectivity patterns between both types of neurons. We also show that SSA activity can occur at multiple timescales reflecting a hierarchy in the connectivity, and demonstrate the emergence of SSA in small-world like networks. Our work provides a step towards understanding how network structure (uncovered through advancements in neuroanatomy and connectomics) can impact on spatio-temporal neural activity and constrain the resulting dynamics.

q-bio.NC↗

arXiv2014

Revealing cell assemblies at multiple levels of granularity

Background: Current neuronal monitoring techniques, such as calcium imaging and multi-electrode arrays, enable recordings of spiking activity from hundreds of neurons simultaneously. Of primary importance in systems neuroscience is the identification of cell assemblies: groups of neurons that cooperate in some form within the recorded population. New Method: We introduce a simple, integrated framework for the detection of cell-assemblies from spiking data without a priori assumptions about the size or number of groups present. We define a biophysically-inspired measure to extract a directed functional connectivity matrix between both excitatory and inhibitory neurons based on their spiking history. The resulting network representation is analyzed using the Markov Stability framework, a graph theoretical method for community detection across scales, to reveal groups of neurons that are significantly related in the recorded time-series at different levels of granularity. Results and comparison with existing methods: Using synthetic spike-trains, including simulated data from leaky-integrate-and-fire networks, our method is able to identify important patterns in the data such as hierarchical structure that are missed by other standard methods. We further apply the method to experimental data from retinal ganglion cells of mouse and salamander, in which we identify cell-groups that correspond to known functional types, and to hippocampal recordings from rats exploring a linear track, where we detect place cells with high fidelity. Conclusions: We present a versatile method to detect neural assemblies in spiking data applicable across a spectrum of relevant scales that contributes to understanding spatio-temporal information gathered from systems neuroscience experiments.

q-bio.NC↗

arXiv2014

The Secrets of Salient Object Segmentation

In this paper we provide an extensive evaluation of fixation prediction and salient object segmentation algorithms as well as statistics of major datasets. Our analysis identifies serious design flaws of existing salient object benchmarks, called the dataset design bias, by over emphasizing the stereotypical concepts of saliency. The dataset design bias does not only create the discomforting disconnection between fixations and salient object segmentation, but also misleads the algorithm designing. Based on our analysis, we propose a new high quality dataset that offers both fixation and salient object segmentation ground-truth. With fixations and salient object being presented simultaneously, we are able to bridge the gap between fixations and salient objects, and propose a novel method for salient object segmentation. Finally, we report significant benchmark progress on three existing datasets of segmenting salient objects

cs.CV↗

arXiv2014

Consciousness: Here, There but Not Everywhere

The science of consciousness has made great strides by focusing on the behavioral and neuronal correlates of experience. However, correlates are not enough if we are to understand even basic neurological fact; nor are they of much help in cases where we would like to know if consciousness is present: patients with a few remaining islands of functioning cortex, pre-term infants, non-mammalian species, and machines that are rapidly outperforming people at driving, recognizing faces and objects, and answering difficult questions. To address these issues, we need a theory of consciousness that specifies what experience is and what type of physical systems can have it. Integrated Information Theory (IIT) does so by starting from conscious experience via five phenomenological axioms of existence, composition, information, integration, and exclusion. From these it derives five postulates about the properties required of physical mechanisms to support consciousness. The theory provides a principled account of both the quantity and the quality of an individual experience, and a calculus to evaluate whether or not a particular system of mechanisms is conscious and of what. IIT explains a range of clinical and laboratory findings, makes testable predictions, and extrapolates to unusual conditions. The theory vindicates some panpsychist intuitions -- consciousness is an intrinsic, fundamental property, is graded, is common among biological organisms, and even some very simple systems have some. However, unlike panpsychism, IIT implies that not everything is conscious, for example group of individuals or feed forward networks. In sharp contrast with widespread functionalist beliefs, IIT implies that digital computers, even if their behavior were to be functionally equivalent to ours, and even if they were to run faithful simulations of the human brain, would experience next to nothing.

q-bio.NC↗

arXiv2014

Quantifying synergistic mutual information

Quantifying cooperation or synergy among random variables in predicting a single target random variable is an important problem in many complex systems. We review three prior information-theoretic measures of synergy and introduce a novel synergy measure defined as the difference between the whole and the union of its parts. We apply all four measures against a suite of binary circuits to demonstrate that our measure alone quantifies the intuitive concept of synergy across all examples. We show that for our measure of synergy that independent predictors can have positive redundant information.

cs.IT↗

arXiv2013

A Meta-Theory of Boundary Detection Benchmarks

Human labeled datasets, along with their corresponding evaluation algorithms, play an important role in boundary detection. We here present a psychophysical experiment that addresses the reliability of such benchmarks. To find better remedies to evaluate the performance of any boundary detection algorithm, we propose a computational framework to remove inappropriate human labels and estimate the intrinsic properties of boundaries.

cs.CV↗

arXiv2011

Integrated information increases with fitness in the evolution of animats

One of the hallmarks of biological organisms is their ability to integrate disparate information sources to optimize their behavior in complex environments. How this capability can be quantified and related to the functional complexity of an organism remains a challenging problem, in particular since organismal functional complexity is not well-defined. We present here several candidate measures that quantify information and integration, and study their dependence on fitness as an artificial agent ("animat") evolves over thousands of generations to solve a navigation task in a simple, simulated environment. We compare the ability of these measures to predict high fitness with more conventional information-theoretic processing measures. As the animat adapts by increasing its "fit" to the world, information integration and processing increase commensurately along the evolutionary line of descent. We suggest that the correlation of fitness with information integration and with processing measures implies that high fitness requires both information processing as well as integration, but that information integration may be a better measure when the task requires memory. A correlation of measures of information integration (but also information processing) and fitness strongly suggests that these measures reflect the functional complexity of the animat, and that such measures can be used to quantify functional complexity even in the absence of fitness data.

q-bio.PE↗

arXiv2007

Dynamic Moment Analysis of the Extracellular Electric Field of a Biologically Realistic Spiking Neuron

Based upon the membrane currents generated by an action potential in a biologically realistic model of a pyramidal, hippocampal cell within rat CA1, we perform a moment expansion of the extracellular field potential. We decompose the potential into both inverse and classical moments and show that this method is a rapid and efficient way to calculate the extracellular field both near and far from the cell body. The action potential gives rise to a large quadrupole moment that contributes to the extracellular field up to distances of almost 1 cm. This method will serve as a starting point in connecting the microscopic generation of electric fields at the level of neurons to macroscopic observables such as the local field potential.

q-bio.NC↗