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Christopher H. Jackson

Publications and source records attributed to Christopher H. Jackson.

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A simulation and case study to evaluate the extrapolation performance of flexible Bayesian survival models when incorporating real-world data

Background: Assessment of long-term survival for health technology assessment often necessitates extrapolation beyond the duration of a clinical trial. Without robust methods and external data, extrapolations are unreliable. Flexible Bayesian survival models that incorporate longer-term data sources, including registry data and population mortality, have been proposed as an alternative to using standard parametric models with trial data alone. Methods: The accuracy and uncertainty of extrapolations from the survextrap Bayesian survival model and R package were evaluated. In case studies and simulations, we assessed the accuracy of estimates with and without long-term data, under different assumptions about the long-term hazard rate and how it differs between datasets, and about treatment effects. Results: The survextrap model gives accurate extrapolations of long-term survival when long-term data on the patients of interest are included. Even using moderately biased external data gives improvements over using the short-term trial data alone. Furthermore, the model gives accurate extrapolations of differences in survival between treatment groups, provided that a reasonably accurate assumption is made about how the treatment effect will change over time. If no long-term data are available, then the model can quantify structural uncertainty about potential future changes in hazard rates. Conclusions: This analysis shows that Bayesian modelling can give accurate and reliable survival extrapolations by making the most of all available trial and real-world data. This work improves confidence in the use of a powerful tool for evidence-based healthcare decision-making.

stat.ME

Simulation-based assessment of a Bayesian survival model with flexible baseline hazard and time-dependent effects

There is increasing interest in flexible parametric models for the analysis of time-to-event data, yet Bayesian approaches that offer incorporation of prior knowledge remain underused. A flexible Bayesian parametric model has recently been proposed that uses M-splines to model the hazard function. We conducted a simulation study to assess the statistical performance of this model, which is implemented in the survextrap R package. Our simulation uses data generating mechanisms of realistic survival data based on two oncology clinical trials. Statistical performance is compared across a range of flexible models, varying the M-spline specification, smoothing procedure, priors, and other computational settings. We demonstrate good performance across realistic scenarios, including good fit of complex baseline hazard functions and time-dependent covariate effects. This work helps inform key considerations to guide model selection, as well as identifying appropriate default model settings in the software that should perform well in a broad range of applications.

stat.ME

Optimal risk-assessment scheduling for primary prevention of cardiovascular disease

In this work, we introduce a personalised and age-specific Net Benefit function, composed of benefits and costs, to recommend optimal timing of risk assessments for cardiovascular disease prevention. We extend the 2-stage landmarking model to estimate patient-specific CVD risk profiles, adjusting for time-varying covariates. We apply our model to data from the Clinical Practice Research Datalink, comprising primary care electronic health records from the UK. We find that people at lower risk could be recommended an optimal risk-assessment interval of 5 years or more. Time-varying risk-factors are required to discriminate between more frequent schedules for higher-risk people.

stat.AP

Trends in risks of severe events and lengths of stay for COVID-19 hospitalisations in England over the pre-vaccination era: results from the Public Health England SARI-Watch surveillance scheme

Background: Trends in hospitalised case-fatality risk (HFR), risk of intensive care unit (ICU) admission and lengths of stay for patients hospitalised for COVID-19 in England over the pre-vaccination era are unknown. Methods: Data on hospital and ICU admissions with COVID-19 at 31 NHS trusts in England were collected by Public Health England's Severe Acute Respiratory Infections surveillance system and linked to death information. We applied parametric multi-state mixture models, accounting for censored outcomes and regressing risks and times between events on month of admission, geography, and baseline characteristics. Findings: 20,785 adults were admitted with COVID-19 in 2020. Between March and June/July/August estimated HFR reduced from 31.9% (95% confidence interval 30.3-33.5%) to 10.9% (9.4-12.7%), then rose steadily from 21.6% (18.4-25.5%) in September to 25.7% (23.0-29.2%) in December, with steeper increases among older patients, those with multi-morbidity and outside London/South of England. ICU admission risk reduced from 13.9% (12.8-15.2%) in March to 6.2% (5.3-7.1%) in May, rising to a high of 14.2% (11.1-17.2%) in September. Median length of stay in non-critical care increased during 2020, from 6.6 to 12.3 days for those dying, and from 6.1 to 9.3 days for those discharged. Interpretation: Initial improvements in patient outcomes, corresponding to developments in clinical practice, were not sustained throughout 2020, with HFR in December approaching the levels seen at the start of the pandemic, whilst median hospital stays have lengthened. The role of increased transmission, new variants, case-mix and hospital pressures in increasing COVID-19 severity requires urgent further investigation.

stat.AP