arXiv subjects

Christopher Ré

Publications and source records attributed to Christopher Ré.

At least 91 records · Page 5Linked to original sources

arXiv2022

FlashAttention: Fast and Memory-Efficient Exact Attention with IO-Awareness

Transformers are slow and memory-hungry on long sequences, since the time and memory complexity of self-attention are quadratic in sequence length. Approximate attention methods have attempted to address this problem by trading off model quality to reduce the compute complexity, but often do not achieve wall-clock speedup. We argue that a missing principle is making attention algorithms IO-aware -- accounting for reads and writes between levels of GPU memory. We propose FlashAttention, an IO-aware exact attention algorithm that uses tiling to reduce the number of memory reads/writes between GPU high bandwidth memory (HBM) and GPU on-chip SRAM. We analyze the IO complexity of FlashAttention, showing that it requires fewer HBM accesses than standard attention, and is optimal for a range of SRAM sizes. We also extend FlashAttention to block-sparse attention, yielding an approximate attention algorithm that is faster than any existing approximate attention method. FlashAttention trains Transformers faster than existing baselines: 15% end-to-end wall-clock speedup on BERT-large (seq. length 512) compared to the MLPerf 1.1 training speed record, 3$\times$ speedup on GPT-2 (seq. length 1K), and 2.4$\times$ speedup on long-range arena (seq. length 1K-4K). FlashAttention and block-sparse FlashAttention enable longer context in Transformers, yielding higher quality models (0.7 better perplexity on GPT-2 and 6.4 points of lift on long-document classification) and entirely new capabilities: the first Transformers to achieve better-than-chance performance on the Path-X challenge (seq. length 16K, 61.4% accuracy) and Path-256 (seq. length 64K, 63.1% accuracy).

cs.LG↗

arXiv2022

VORTEX: Physics-Driven Data Augmentations Using Consistency Training for Robust Accelerated MRI Reconstruction

Deep neural networks have enabled improved image quality and fast inference times for various inverse problems, including accelerated magnetic resonance imaging (MRI) reconstruction. However, such models require a large number of fully-sampled ground truth datasets, which are difficult to curate, and are sensitive to distribution drifts. In this work, we propose applying physics-driven data augmentations for consistency training that leverage our domain knowledge of the forward MRI data acquisition process and MRI physics to achieve improved label efficiency and robustness to clinically-relevant distribution drifts. Our approach, termed VORTEX, (1) demonstrates strong improvements over supervised baselines with and without data augmentation in robustness to signal-to-noise ratio change and motion corruption in data-limited regimes; (2) considerably outperforms state-of-the-art purely image-based data augmentation techniques and self-supervised reconstruction methods on both in-distribution and out-of-distribution data; and (3) enables composing heterogeneous image-based and physics-driven data augmentations. Our code is available at https://github.com/ad12/meddlr.

eess.IV↗

arXiv2022

The Importance of Background Information for Out of Distribution Generalization

Domain generalization in medical image classification is an important problem for trustworthy machine learning to be deployed in healthcare. We find that existing approaches for domain generalization which utilize ground-truth abnormality segmentations to control feature attributions have poor out-of-distribution (OOD) performance relative to the standard baseline of empirical risk minimization (ERM). We investigate what regions of an image are important for medical image classification and show that parts of the background, that which is not contained in the abnormality segmentation, provides helpful signal. We then develop a new task-specific mask which covers all relevant regions. Utilizing this new segmentation mask significantly improves the performance of the existing methods on the OOD test sets. To obtain better generalization results than ERM, we find it necessary to scale up the training data size in addition to the usage of these task-specific masks.

cs.CV↗

arXiv2022

Domino: Discovering Systematic Errors with Cross-Modal Embeddings

Machine learning models that achieve high overall accuracy often make systematic errors on important subsets (or slices) of data. Identifying underperforming slices is particularly challenging when working with high-dimensional inputs (e.g. images, audio), where important slices are often unlabeled. In order to address this issue, recent studies have proposed automated slice discovery methods (SDMs), which leverage learned model representations to mine input data for slices on which a model performs poorly. To be useful to a practitioner, these methods must identify slices that are both underperforming and coherent (i.e. united by a human-understandable concept). However, no quantitative evaluation framework currently exists for rigorously assessing SDMs with respect to these criteria. Additionally, prior qualitative evaluations have shown that SDMs often identify slices that are incoherent. In this work, we address these challenges by first designing a principled evaluation framework that enables a quantitative comparison of SDMs across 1,235 slice discovery settings in three input domains (natural images, medical images, and time-series data). Then, motivated by the recent development of powerful cross-modal representation learning approaches, we present Domino, an SDM that leverages cross-modal embeddings and a novel error-aware mixture model to discover and describe coherent slices. We find that Domino accurately identifies 36% of the 1,235 slices in our framework - a 12 percentage point improvement over prior methods. Further, Domino is the first SDM that can provide natural language descriptions of identified slices, correctly generating the exact name of the slice in 35% of settings.

cs.LG↗

arXiv2022

Pixelated Butterfly: Simple and Efficient Sparse training for Neural Network Models

Overparameterized neural networks generalize well but are expensive to train. Ideally, one would like to reduce their computational cost while retaining their generalization benefits. Sparse model training is a simple and promising approach to achieve this, but there remain challenges as existing methods struggle with accuracy loss, slow training runtime, or difficulty in sparsifying all model components. The core problem is that searching for a sparsity mask over a discrete set of sparse matrices is difficult and expensive. To address this, our main insight is to optimize over a continuous superset of sparse matrices with a fixed structure known as products of butterfly matrices. As butterfly matrices are not hardware efficient, we propose simple variants of butterfly (block and flat) to take advantage of modern hardware. Our method (Pixelated Butterfly) uses a simple fixed sparsity pattern based on flat block butterfly and low-rank matrices to sparsify most network layers (e.g., attention, MLP). We empirically validate that Pixelated Butterfly is 3x faster than butterfly and speeds up training to achieve favorable accuracy--efficiency tradeoffs. On the ImageNet classification and WikiText-103 language modeling tasks, our sparse models train up to 2.5x faster than the dense MLP-Mixer, Vision Transformer, and GPT-2 medium with no drop in accuracy.

cs.LG↗

arXiv2022

TABi: Type-Aware Bi-Encoders for Open-Domain Entity Retrieval

Entity retrieval--retrieving information about entity mentions in a query--is a key step in open-domain tasks, such as question answering or fact checking. However, state-of-the-art entity retrievers struggle to retrieve rare entities for ambiguous mentions due to biases towards popular entities. Incorporating knowledge graph types during training could help overcome popularity biases, but there are several challenges: (1) existing type-based retrieval methods require mention boundaries as input, but open-domain tasks run on unstructured text, (2) type-based methods should not compromise overall performance, and (3) type-based methods should be robust to noisy and missing types. In this work, we introduce TABi, a method to jointly train bi-encoders on knowledge graph types and unstructured text for entity retrieval for open-domain tasks. TABi leverages a type-enforced contrastive loss to encourage entities and queries of similar types to be close in the embedding space. TABi improves retrieval of rare entities on the Ambiguous Entity Retrieval (AmbER) sets, while maintaining strong overall retrieval performance on open-domain tasks in the KILT benchmark compared to state-of-the-art retrievers. TABi is also robust to incomplete type systems, improving rare entity retrieval over baselines with only 5% type coverage of the training dataset. We make our code publicly available at https://github.com/HazyResearch/tabi.

cs.CL↗

arXiv2022

Machine Learning on Graphs: A Model and Comprehensive Taxonomy

There has been a surge of recent interest in learning representations for graph-structured data. Graph representation learning methods have generally fallen into three main categories, based on the availability of labeled data. The first, network embedding (such as shallow graph embedding or graph auto-encoders), focuses on learning unsupervised representations of relational structure. The second, graph regularized neural networks, leverages graphs to augment neural network losses with a regularization objective for semi-supervised learning. The third, graph neural networks, aims to learn differentiable functions over discrete topologies with arbitrary structure. However, despite the popularity of these areas there has been surprisingly little work on unifying the three paradigms. Here, we aim to bridge the gap between graph neural networks, network embedding and graph regularization models. We propose a comprehensive taxonomy of representation learning methods for graph-structured data, aiming to unify several disparate bodies of work. Specifically, we propose a Graph Encoder Decoder Model (GRAPHEDM), which generalizes popular algorithms for semi-supervised learning on graphs (e.g. GraphSage, Graph Convolutional Networks, Graph Attention Networks), and unsupervised learning of graph representations (e.g. DeepWalk, node2vec, etc) into a single consistent approach. To illustrate the generality of this approach, we fit over thirty existing methods into this framework. We believe that this unifying view both provides a solid foundation for understanding the intuition behind these methods, and enables future research in the area.

cs.LG↗

arXiv2022

Mandoline: Model Evaluation under Distribution Shift

Machine learning models are often deployed in different settings than they were trained and validated on, posing a challenge to practitioners who wish to predict how well the deployed model will perform on a target distribution. If an unlabeled sample from the target distribution is available, along with a labeled sample from a possibly different source distribution, standard approaches such as importance weighting can be applied to estimate performance on the target. However, importance weighting struggles when the source and target distributions have non-overlapping support or are high-dimensional. Taking inspiration from fields such as epidemiology and polling, we develop Mandoline, a new evaluation framework that mitigates these issues. Our key insight is that practitioners may have prior knowledge about the ways in which the distribution shifts, which we can use to better guide the importance weighting procedure. Specifically, users write simple "slicing functions" - noisy, potentially correlated binary functions intended to capture possible axes of distribution shift - to compute reweighted performance estimates. We further describe a density ratio estimation framework for the slices and show how its estimation error scales with slice quality and dataset size. Empirical validation on NLP and vision tasks shows that Mandoline can estimate performance on the target distribution up to 3x more accurately compared to standard baselines.

cs.LG↗

arXiv2022

No Subclass Left Behind: Fine-Grained Robustness in Coarse-Grained Classification Problems

In real-world classification tasks, each class often comprises multiple finer-grained "subclasses." As the subclass labels are frequently unavailable, models trained using only the coarser-grained class labels often exhibit highly variable performance across different subclasses. This phenomenon, known as hidden stratification, has important consequences for models deployed in safety-critical applications such as medicine. We propose GEORGE, a method to both measure and mitigate hidden stratification even when subclass labels are unknown. We first observe that unlabeled subclasses are often separable in the feature space of deep neural networks, and exploit this fact to estimate subclass labels for the training data via clustering techniques. We then use these approximate subclass labels as a form of noisy supervision in a distributionally robust optimization objective. We theoretically characterize the performance of GEORGE in terms of the worst-case generalization error across any subclass. We empirically validate GEORGE on a mix of real-world and benchmark image classification datasets, and show that our approach boosts worst-case subclass accuracy by up to 22 percentage points compared to standard training techniques, without requiring any prior information about the subclasses.

cs.LG↗

arXiv2022

BARACK: Partially Supervised Group Robustness With Guarantees

While neural networks have shown remarkable success on classification tasks in terms of average-case performance, they often fail to perform well on certain groups of the data. Such group information may be expensive to obtain; thus, recent works in robustness and fairness have proposed ways to improve worst-group performance even when group labels are unavailable for the training data. However, these methods generally underperform methods that utilize group information at training time. In this work, we assume access to a small number of group labels alongside a larger dataset without group labels. We propose BARACK, a simple two-step framework to utilize this partial group information to improve worst-group performance: train a model to predict the missing group labels for the training data, and then use these predicted group labels in a robust optimization objective. Theoretically, we provide generalization bounds for our approach in terms of the worst-group performance, which scale with respect to both the total number of training points and the number of training points with group labels. Empirically, our method outperforms the baselines that do not use group information, even when only 1-33% of points have group labels. We provide ablation studies to support the robustness and extensibility of our framework.

cs.LG↗

arXiv2022

Low-Memory Neural Network Training: A Technical Report

Memory is increasingly often the bottleneck when training neural network models. Despite this, techniques to lower the overall memory requirements of training have been less widely studied compared to the extensive literature on reducing the memory requirements of inference. In this paper we study a fundamental question: How much memory is actually needed to train a neural network? To answer this question, we profile the overall memory usage of training on two representative deep learning benchmarks -- the WideResNet model for image classification and the DynamicConv Transformer model for machine translation -- and comprehensively evaluate four standard techniques for reducing the training memory requirements: (1) imposing sparsity on the model, (2) using low precision, (3) microbatching, and (4) gradient checkpointing. We explore how each of these techniques in isolation affects both the peak memory usage of training and the quality of the end model, and explore the memory, accuracy, and computation tradeoffs incurred when combining these techniques. Using appropriate combinations of these techniques, we show that it is possible to the reduce the memory required to train a WideResNet-28-2 on CIFAR-10 by up to 60.7x with a 0.4% loss in accuracy, and reduce the memory required to train a DynamicConv model on IWSLT'14 German to English translation by up to 8.7x with a BLEU score drop of 0.15.

cs.LG↗

arXiv2022

Monarch: Expressive Structured Matrices for Efficient and Accurate Training

Large neural networks excel in many domains, but they are expensive to train and fine-tune. A popular approach to reduce their compute or memory requirements is to replace dense weight matrices with structured ones (e.g., sparse, low-rank, Fourier transform). These methods have not seen widespread adoption (1) in end-to-end training due to unfavorable efficiency--quality tradeoffs, and (2) in dense-to-sparse fine-tuning due to lack of tractable algorithms to approximate a given dense weight matrix. To address these issues, we propose a class of matrices (Monarch) that is hardware-efficient (they are parameterized as products of two block-diagonal matrices for better hardware utilization) and expressive (they can represent many commonly used transforms). Surprisingly, the problem of approximating a dense weight matrix with a Monarch matrix, though nonconvex, has an analytical optimal solution. These properties of Monarch matrices unlock new ways to train and fine-tune sparse and dense models. We empirically validate that Monarch can achieve favorable accuracy-efficiency tradeoffs in several end-to-end sparse training applications: speeding up ViT and GPT-2 training on ImageNet classification and Wikitext-103 language modeling by 2x with comparable model quality, and reducing the error on PDE solving and MRI reconstruction tasks by 40%. In sparse-to-dense training, with a simple technique called "reverse sparsification," Monarch matrices serve as a useful intermediate representation to speed up GPT-2 pretraining on OpenWebText by 2x without quality drop. The same technique brings 23% faster BERT pretraining than even the very optimized implementation from Nvidia that set the MLPerf 1.1 record. In dense-to-sparse fine-tuning, as a proof-of-concept, our Monarch approximation algorithm speeds up BERT fine-tuning on GLUE by 1.7x with comparable accuracy.

cs.LG↗

arXiv2022

SKM-TEA: A Dataset for Accelerated MRI Reconstruction with Dense Image Labels for Quantitative Clinical Evaluation

Magnetic resonance imaging (MRI) is a cornerstone of modern medical imaging. However, long image acquisition times, the need for qualitative expert analysis, and the lack of (and difficulty extracting) quantitative indicators that are sensitive to tissue health have curtailed widespread clinical and research studies. While recent machine learning methods for MRI reconstruction and analysis have shown promise for reducing this burden, these techniques are primarily validated with imperfect image quality metrics, which are discordant with clinically-relevant measures that ultimately hamper clinical deployment and clinician trust. To mitigate this challenge, we present the Stanford Knee MRI with Multi-Task Evaluation (SKM-TEA) dataset, a collection of quantitative knee MRI (qMRI) scans that enables end-to-end, clinically-relevant evaluation of MRI reconstruction and analysis tools. This 1.6TB dataset consists of raw-data measurements of ~25,000 slices (155 patients) of anonymized patient MRI scans, the corresponding scanner-generated DICOM images, manual segmentations of four tissues, and bounding box annotations for sixteen clinically relevant pathologies. We provide a framework for using qMRI parameter maps, along with image reconstructions and dense image labels, for measuring the quality of qMRI biomarker estimates extracted from MRI reconstruction, segmentation, and detection techniques. Finally, we use this framework to benchmark state-of-the-art baselines on this dataset. We hope our SKM-TEA dataset and code can enable a broad spectrum of research for modular image reconstruction and image analysis in a clinically informed manner. Dataset access, code, and benchmarks are available at https://github.com/StanfordMIMI/skm-tea.

eess.IV↗

arXiv2022

Reasoning over Public and Private Data in Retrieval-Based Systems

Users and organizations are generating ever-increasing amounts of private data from a wide range of sources. Incorporating private data is important to personalize open-domain applications such as question-answering, fact-checking, and personal assistants. State-of-the-art systems for these tasks explicitly retrieve relevant information to a user question from a background corpus before producing an answer. While today's retrieval systems assume the corpus is fully accessible, users are often unable or unwilling to expose their private data to entities hosting public data. We first define the PUBLIC-PRIVATE AUTOREGRESSIVE INFORMATION RETRIEVAL (PAIR) privacy framework for the novel retrieval setting over multiple privacy scopes. We then argue that an adequate benchmark is missing to study PAIR since existing textual benchmarks require retrieving from a single data distribution. However, public and private data intuitively reflect different distributions, motivating us to create ConcurrentQA, the first textual QA benchmark to require concurrent retrieval over multiple data-distributions. Finally, we show that existing systems face large privacy vs. performance tradeoffs when applied to our proposed retrieval setting and investigate how to mitigate these tradeoffs.

cs.IR↗

arXiv2022

It's Raw! Audio Generation with State-Space Models

Developing architectures suitable for modeling raw audio is a challenging problem due to the high sampling rates of audio waveforms. Standard sequence modeling approaches like RNNs and CNNs have previously been tailored to fit the demands of audio, but the resultant architectures make undesirable computational tradeoffs and struggle to model waveforms effectively. We propose SaShiMi, a new multi-scale architecture for waveform modeling built around the recently introduced S4 model for long sequence modeling. We identify that S4 can be unstable during autoregressive generation, and provide a simple improvement to its parameterization by drawing connections to Hurwitz matrices. SaShiMi yields state-of-the-art performance for unconditional waveform generation in the autoregressive setting. Additionally, SaShiMi improves non-autoregressive generation performance when used as the backbone architecture for a diffusion model. Compared to prior architectures in the autoregressive generation setting, SaShiMi generates piano and speech waveforms which humans find more musical and coherent respectively, e.g. 2x better mean opinion scores than WaveNet on an unconditional speech generation task. On a music generation task, SaShiMi outperforms WaveNet on density estimation and speed at both training and inference even when using 3x fewer parameters. Code can be found at https://github.com/HazyResearch/state-spaces and samples at https://hazyresearch.stanford.edu/sashimi-examples.

cs.SD↗

arXiv2021

Personalized Benchmarking with the Ludwig Benchmarking Toolkit

The rapid proliferation of machine learning models across domains and deployment settings has given rise to various communities (e.g. industry practitioners) which seek to benchmark models across tasks and objectives of personal value. Unfortunately, these users cannot use standard benchmark results to perform such value-driven comparisons as traditional benchmarks evaluate models on a single objective (e.g. average accuracy) and fail to facilitate a standardized training framework that controls for confounding variables (e.g. computational budget), making fair comparisons difficult. To address these challenges, we introduce the open-source Ludwig Benchmarking Toolkit (LBT), a personalized benchmarking toolkit for running end-to-end benchmark studies (from hyperparameter optimization to evaluation) across an easily extensible set of tasks, deep learning models, datasets and evaluation metrics. LBT provides a configurable interface for controlling training and customizing evaluation, a standardized training framework for eliminating confounding variables, and support for multi-objective evaluation. We demonstrate how LBT can be used to create personalized benchmark studies with a large-scale comparative analysis for text classification across 7 models and 9 datasets. We explore the trade-offs between inference latency and performance, relationships between dataset attributes and performance, and the effects of pretraining on convergence and robustness, showing how LBT can be used to satisfy various benchmarking objectives.

cs.LG↗

arXiv2021

Rethinking Neural Operations for Diverse Tasks

An important goal of AutoML is to automate-away the design of neural networks on new tasks in under-explored domains. Motivated by this goal, we study the problem of enabling users to discover the right neural operations given data from their specific domain. We introduce a search space of operations called XD-Operations that mimic the inductive bias of standard multi-channel convolutions while being much more expressive: we prove that it includes many named operations across multiple application areas. Starting with any standard backbone such as ResNet, we show how to transform it into a search space over XD-operations and how to traverse the space using a simple weight-sharing scheme. On a diverse set of tasks -- solving PDEs, distance prediction for protein folding, and music modeling -- our approach consistently yields models with lower error than baseline networks and often even lower error than expert-designed domain-specific approaches.

cs.LG↗

arXiv2021

Scatterbrain: Unifying Sparse and Low-rank Attention Approximation

Recent advances in efficient Transformers have exploited either the sparsity or low-rank properties of attention matrices to reduce the computational and memory bottlenecks of modeling long sequences. However, it is still challenging to balance the trade-off between model quality and efficiency to perform a one-size-fits-all approximation for different tasks. To better understand this trade-off, we observe that sparse and low-rank approximations excel in different regimes, determined by the softmax temperature in attention, and sparse + low-rank can outperform each individually. Inspired by the classical robust-PCA algorithm for sparse and low-rank decomposition, we propose Scatterbrain, a novel way to unify sparse (via locality sensitive hashing) and low-rank (via kernel feature map) attention for accurate and efficient approximation. The estimation is unbiased with provably low error. We empirically show that Scatterbrain can achieve 2.1x lower error than baselines when serving as a drop-in replacement in BigGAN image generation and pre-trained T2T-ViT. On a pre-trained T2T Vision transformer, even without fine-tuning, Scatterbrain can reduce 98% of attention memory at the cost of only 1% drop in accuracy. We demonstrate Scatterbrain for end-to-end training with up to 4 points better perplexity and 5 points better average accuracy than sparse or low-rank efficient transformers on language modeling and long-range-arena tasks.

cs.LG↗