arXiv subjects

Chuanqi Tan

Publications and source records attributed to Chuanqi Tan.

At least 55 records · Page 3Linked to original sources

arXiv2021

Learning to Ask for Data-Efficient Event Argument Extraction

Event argument extraction (EAE) is an important task for information extraction to discover specific argument roles. In this study, we cast EAE as a question-based cloze task and empirically analyze fixed discrete token template performance. As generating human-annotated question templates is often time-consuming and labor-intensive, we further propose a novel approach called "Learning to Ask," which can learn optimized question templates for EAE without human annotations. Experiments using the ACE-2005 dataset demonstrate that our method based on optimized questions achieves state-of-the-art performance in both the few-shot and supervised settings.

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arXiv2021

Raise a Child in Large Language Model: Towards Effective and Generalizable Fine-tuning

Recent pretrained language models extend from millions to billions of parameters. Thus the need to fine-tune an extremely large pretrained model with a limited training corpus arises in various downstream tasks. In this paper, we propose a straightforward yet effective fine-tuning technique, Child-Tuning, which updates a subset of parameters (called child network) of large pretrained models via strategically masking out the gradients of the non-child network during the backward process. Experiments on various downstream tasks in GLUE benchmark show that Child-Tuning consistently outperforms the vanilla fine-tuning by 1.5~8.6 average score among four different pretrained models, and surpasses the prior fine-tuning techniques by 0.6~1.3 points. Furthermore, empirical results on domain transfer and task transfer show that Child-Tuning can obtain better generalization performance by large margins.

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arXiv2021

Biomedical Question Answering: A Survey of Approaches and Challenges

Automatic Question Answering (QA) has been successfully applied in various domains such as search engines and chatbots. Biomedical QA (BQA), as an emerging QA task, enables innovative applications to effectively perceive, access and understand complex biomedical knowledge. There have been tremendous developments of BQA in the past two decades, which we classify into 5 distinctive approaches: classic, information retrieval, machine reading comprehension, knowledge base and question entailment approaches. In this survey, we introduce available datasets and representative methods of each BQA approach in detail. Despite the developments, BQA systems are still immature and rarely used in real-life settings. We identify and characterize several key challenges in BQA that might lead to this issue, and discuss some potential future directions to explore.

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arXiv2021

Document-level Relation Extraction as Semantic Segmentation

Document-level relation extraction aims to extract relations among multiple entity pairs from a document. Previously proposed graph-based or transformer-based models utilize the entities independently, regardless of global information among relational triples. This paper approaches the problem by predicting an entity-level relation matrix to capture local and global information, parallel to the semantic segmentation task in computer vision. Herein, we propose a Document U-shaped Network for document-level relation extraction. Specifically, we leverage an encoder module to capture the context information of entities and a U-shaped segmentation module over the image-style feature map to capture global interdependency among triples. Experimental results show that our approach can obtain state-of-the-art performance on three benchmark datasets DocRED, CDR, and GDA.

cs.CL↗

arXiv2021

Meta Gradient Adversarial Attack

In recent years, research on adversarial attacks has become a hot spot. Although current literature on the transfer-based adversarial attack has achieved promising results for improving the transferability to unseen black-box models, it still leaves a long way to go. Inspired by the idea of meta-learning, this paper proposes a novel architecture called Meta Gradient Adversarial Attack (MGAA), which is plug-and-play and can be integrated with any existing gradient-based attack method for improving the cross-model transferability. Specifically, we randomly sample multiple models from a model zoo to compose different tasks and iteratively simulate a white-box attack and a black-box attack in each task. By narrowing the gap between the gradient directions in white-box and black-box attacks, the transferability of adversarial examples on the black-box setting can be improved. Extensive experiments on the CIFAR10 and ImageNet datasets show that our architecture outperforms the state-of-the-art methods for both black-box and white-box attack settings.

cs.CV↗

arXiv2021

Improving Biomedical Pretrained Language Models with Knowledge

Pretrained language models have shown success in many natural language processing tasks. Many works explore incorporating knowledge into language models. In the biomedical domain, experts have taken decades of effort on building large-scale knowledge bases. For example, the Unified Medical Language System (UMLS) contains millions of entities with their synonyms and defines hundreds of relations among entities. Leveraging this knowledge can benefit a variety of downstream tasks such as named entity recognition and relation extraction. To this end, we propose KeBioLM, a biomedical pretrained language model that explicitly leverages knowledge from the UMLS knowledge bases. Specifically, we extract entities from PubMed abstracts and link them to UMLS. We then train a knowledge-aware language model that firstly applies a text-only encoding layer to learn entity representation and applies a text-entity fusion encoding to aggregate entity representation. Besides, we add two training objectives as entity detection and entity linking. Experiments on the named entity recognition and relation extraction from the BLURB benchmark demonstrate the effectiveness of our approach. Further analysis on a collected probing dataset shows that our model has better ability to model medical knowledge.

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arXiv2021

Noisy-Labeled NER with Confidence Estimation

Recent studies in deep learning have shown significant progress in named entity recognition (NER). Most existing works assume clean data annotation, yet a fundamental challenge in real-world scenarios is the large amount of noise from a variety of sources (e.g., pseudo, weak, or distant annotations). This work studies NER under a noisy labeled setting with calibrated confidence estimation. Based on empirical observations of different training dynamics of noisy and clean labels, we propose strategies for estimating confidence scores based on local and global independence assumptions. We partially marginalize out labels of low confidence with a CRF model. We further propose a calibration method for confidence scores based on the structure of entity labels. We integrate our approach into a self-training framework for boosting performance. Experiments in general noisy settings with four languages and distantly labeled settings demonstrate the effectiveness of our method. Our code can be found at https://github.com/liukun95/Noisy-NER-Confidence-Estimation

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arXiv2021

Probing BERT in Hyperbolic Spaces

Recently, a variety of probing tasks are proposed to discover linguistic properties learned in contextualized word embeddings. Many of these works implicitly assume these embeddings lay in certain metric spaces, typically the Euclidean space. This work considers a family of geometrically special spaces, the hyperbolic spaces, that exhibit better inductive biases for hierarchical structures and may better reveal linguistic hierarchies encoded in contextualized representations. We introduce a Poincare probe, a structural probe projecting these embeddings into a Poincare subspace with explicitly defined hierarchies. We focus on two probing objectives: (a) dependency trees where the hierarchy is defined as head-dependent structures; (b) lexical sentiments where the hierarchy is defined as the polarity of words (positivity and negativity). We argue that a key desideratum of a probe is its sensitivity to the existence of linguistic structures. We apply our probes on BERT, a typical contextualized embedding model. In a syntactic subspace, our probe better recovers tree structures than Euclidean probes, revealing the possibility that the geometry of BERT syntax may not necessarily be Euclidean. In a sentiment subspace, we reveal two possible meta-embeddings for positive and negative sentiments and show how lexically-controlled contextualization would change the geometric localization of embeddings. We demonstrate the findings with our Poincare probe via extensive experiments and visualization. Our results can be reproduced at https://github.com/FranxYao/PoincareProbe.

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arXiv2020

Nested Named Entity Recognition with Partially-Observed TreeCRFs

Named entity recognition (NER) is a well-studied task in natural language processing. However, the widely-used sequence labeling framework is difficult to detect entities with nested structures. In this work, we view nested NER as constituency parsing with partially-observed trees and model it with partially-observed TreeCRFs. Specifically, we view all labeled entity spans as observed nodes in a constituency tree, and other spans as latent nodes. With the TreeCRF we achieve a uniform way to jointly model the observed and the latent nodes. To compute the probability of partial trees with partial marginalization, we propose a variant of the Inside algorithm, the \textsc{Masked Inside} algorithm, that supports different inference operations for different nodes (evaluation for the observed, marginalization for the latent, and rejection for nodes incompatible with the observed) with efficient parallelized implementation, thus significantly speeding up training and inference. Experiments show that our approach achieves the state-of-the-art (SOTA) F1 scores on the ACE2004, ACE2005 dataset, and shows comparable performance to SOTA models on the GENIA dataset. Our approach is implemented at: \url{https://github.com/FranxYao/Partially-Observed-TreeCRFs}.

cs.CL↗

arXiv2020

Latent Template Induction with Gumbel-CRFs

Learning to control the structure of sentences is a challenging problem in text generation. Existing work either relies on simple deterministic approaches or RL-based hard structures. We explore the use of structured variational autoencoders to infer latent templates for sentence generation using a soft, continuous relaxation in order to utilize reparameterization for training. Specifically, we propose a Gumbel-CRF, a continuous relaxation of the CRF sampling algorithm using a relaxed Forward-Filtering Backward-Sampling (FFBS) approach. As a reparameterized gradient estimator, the Gumbel-CRF gives more stable gradients than score-function based estimators. As a structured inference network, we show that it learns interpretable templates during training, which allows us to control the decoder during testing. We demonstrate the effectiveness of our methods with experiments on data-to-text generation and unsupervised paraphrase generation.

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arXiv2020

Predicting Clinical Trial Results by Implicit Evidence Integration

Clinical trials provide essential guidance for practicing Evidence-Based Medicine, though often accompanying with unendurable costs and risks. To optimize the design of clinical trials, we introduce a novel Clinical Trial Result Prediction (CTRP) task. In the CTRP framework, a model takes a PICO-formatted clinical trial proposal with its background as input and predicts the result, i.e. how the Intervention group compares with the Comparison group in terms of the measured Outcome in the studied Population. While structured clinical evidence is prohibitively expensive for manual collection, we exploit large-scale unstructured sentences from medical literature that implicitly contain PICOs and results as evidence. Specifically, we pre-train a model to predict the disentangled results from such implicit evidence and fine-tune the model with limited data on the downstream datasets. Experiments on the benchmark Evidence Integration dataset show that the proposed model outperforms the baselines by large margins, e.g., with a 10.7% relative gain over BioBERT in macro-F1. Moreover, the performance improvement is also validated on another dataset composed of clinical trials related to COVID-19.

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arXiv2019

Attention-based Transfer Learning for Brain-computer Interface

Different functional areas of the human brain play different roles in brain activity, which has not been paid sufficient research attention in the brain-computer interface (BCI) field. This paper presents a new approach for electroencephalography (EEG) classification that applies attention-based transfer learning. Our approach considers the importance of different brain functional areas to improve the accuracy of EEG classification, and provides an additional way to automatically identify brain functional areas associated with new activities without the involvement of a medical professional. We demonstrate empirically that our approach out-performs state-of-the-art approaches in the task of EEG classification, and the results of visualization indicate that our approach can detect brain functional areas related to a certain task.

eess.SP↗

arXiv2018

Neural Melody Composition from Lyrics

In this paper, we study a novel task that learns to compose music from natural language. Given the lyrics as input, we propose a melody composition model that generates lyrics-conditional melody as well as the exact alignment between the generated melody and the given lyrics simultaneously. More specifically, we develop the melody composition model based on the sequence-to-sequence framework. It consists of two neural encoders to encode the current lyrics and the context melody respectively, and a hierarchical decoder to jointly produce musical notes and the corresponding alignment. Experimental results on lyrics-melody pairs of 18,451 pop songs demonstrate the effectiveness of our proposed methods. In addition, we apply a singing voice synthesizer software to synthesize the "singing" of the lyrics and melodies for human evaluation. Results indicate that our generated melodies are more melodious and tuneful compared with the baseline method.

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arXiv2018

Deep Transfer Learning for EEG-based Brain Computer Interface

The electroencephalography classifier is the most important component of brain-computer interface based systems. There are two major problems hindering the improvement of it. First, traditional methods do not fully exploit multimodal information. Second, large-scale annotated EEG datasets are almost impossible to acquire because biological data acquisition is challenging and quality annotation is costly. Herein, we propose a novel deep transfer learning approach to solve these two problems. First, we model cognitive events based on EEG data by characterizing the data using EEG optical flow, which is designed to preserve multimodal EEG information in a uniform representation. Second, we design a deep transfer learning framework which is suitable for transferring knowledge by joint training, which contains a adversarial network and a special loss function. The experiments demonstrate that our approach, when applied to EEG classification tasks, has many advantages, such as robustness and accuracy.

cs.CV↗

arXiv2018

A Survey on Deep Transfer Learning

As a new classification platform, deep learning has recently received increasing attention from researchers and has been successfully applied to many domains. In some domains, like bioinformatics and robotics, it is very difficult to construct a large-scale well-annotated dataset due to the expense of data acquisition and costly annotation, which limits its development. Transfer learning relaxes the hypothesis that the training data must be independent and identically distributed (i.i.d.) with the test data, which motivates us to use transfer learning to solve the problem of insufficient training data. This survey focuses on reviewing the current researches of transfer learning by using deep neural network and its applications. We defined deep transfer learning, category and review the recent research works based on the techniques used in deep transfer learning.

cs.LG↗

arXiv2018

Spatial and Spectral Features Fusion for EEG Classification during Motor Imagery in BCI

Brain computer interface (BCI) is the only way for some special patients to communicate with the outside world and provide a direct control channel between brain and the external devices. As a non-invasive interface, the scalp electroencephalography (EEG) has a significant potential to be a major input signal for future BCI systems. Traditional methods only focus on a particular feature in the EEG signal, which limits the practical applications of EEG-based BCI. In this paper, we propose a algorithm for EEG classification with the ability to fuse multiple features. First, use the common spatial pattern (CSP) as the spatial feature and use wavelet coefficient as the spectral feature. Second, fuse these features with a fusion algorithm in orchestrate way to improve the accuracy of classification. Our algorithms are applied to the dataset IVa from BCI complete \uppercase\expandafter{\romannumeral3}. By analyzing the experimental results, it is possible to conclude that we can speculate that our algorithm perform better than traditional methods.

q-bio.QM↗

arXiv2018

Multimodal Classification with Deep Convolutional-Recurrent Neural Networks for Electroencephalography

Electroencephalography (EEG) has become the most significant input signal for brain computer interface (BCI) based systems. However, it is very difficult to obtain satisfactory classification accuracy due to traditional methods can not fully exploit multimodal information. Herein, we propose a novel approach to modeling cognitive events from EEG data by reducing it to a video classification problem, which is designed to preserve the multimodal information of EEG. In addition, optical flow is introduced to represent the variant information of EEG. We train a deep neural network (DNN) with convolutional neural network (CNN) and recurrent neural network (RNN) for the EEG classification task by using EEG video and optical flow. The experiments demonstrate that our approach has many advantages, such as more robustness and more accuracy in EEG classification tasks. According to our approach, we designed a mixed BCI-based rehabilitation support system to help stroke patients perform some basic operations.

cs.CV↗

arXiv2018

S-Net: From Answer Extraction to Answer Generation for Machine Reading Comprehension

In this paper, we present a novel approach to machine reading comprehension for the MS-MARCO dataset. Unlike the SQuAD dataset that aims to answer a question with exact text spans in a passage, the MS-MARCO dataset defines the task as answering a question from multiple passages and the words in the answer are not necessary in the passages. We therefore develop an extraction-then-synthesis framework to synthesize answers from extraction results. Specifically, the answer extraction model is first employed to predict the most important sub-spans from the passage as evidence, and the answer synthesis model takes the evidence as additional features along with the question and passage to further elaborate the final answers. We build the answer extraction model with state-of-the-art neural networks for single passage reading comprehension, and propose an additional task of passage ranking to help answer extraction in multiple passages. The answer synthesis model is based on the sequence-to-sequence neural networks with extracted evidences as features. Experiments show that our extraction-then-synthesis method outperforms state-of-the-art methods.

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