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Ci-Ren Jiang

Publications and source records attributed to Ci-Ren Jiang.

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Ranking hierarchical multi-label classification results with mLPRs

Hierarchical multi-label classification (HMC) has gained considerable attention in recent decades. A seminal line of HMC research addresses the problem in two stages: first, training individual classifiers for each class, then integrating these classifiers to provide a unified set of classification results across classes while respecting the given hierarchy. In this article, we focus on the less attended second-stage question while adhering to the given class hierarchy. This involves addressing a key challenge: how to manage the hierarchical constraint and account for statistical differences in the first-stage classifier scores across different classes to make classification decisions that are optimal under a justifiable criterion. To address this challenge, we introduce a new objective function, called CATCH, to ensure reasonable classification performance. To optimize this function, we propose a decision strategy built on a novel metric, the multidimensional Local Precision Rate (mLPR), which reflects the membership chance of an object in a class given all classifier scores and the class hierarchy. Particularly, we demonstrate that, under certain conditions, transforming the classifier scores into mLPRs and comparing mLPR values for all objects against all classes can, in theory, ensure the class hierarchy and maximize CATCH. In practice, we propose an algorithm HierRank to rank estimated mLPRs under the hierarchical constraint, leading to a ranking that maximizes an empirical version of CATCH. Our approach was evaluated on a synthetic dataset and two real datasets, exhibiting superior performance compared to several state-of-the-art methods in terms of improved decision accuracy.

cs.LG

Eigen-Adjusted Functional Principal Component Analysis

Functional Principal Component Analysis (FPCA) has become a widely-used dimension reduction tool for functional data analysis. When additional covariates are available, existing FPCA models integrate them either in the mean function or in both the mean function and the covariance function. However, methods of the first kind are not suitable for data that display second-order variation, while those of the second kind are time-consuming and make it difficult to perform subsequent statistical analyses on the dimension-reduced representations. To tackle these issues, we introduce an eigen-adjusted FPCA model that integrates covariates in the covariance function only through its eigenvalues. In particular, different structures on the covariate-specific eigenvalues -- corresponding to different practical problems -- are discussed to illustrate the model's flexibility as well as utility. To handle functional observations under different sampling schemes, we employ local linear smoothers to estimate the mean function and the pooled covariance function, and a weighted least square approach to estimate the covariate-specific eigenvalues. The convergence rates of the proposed estimators are further investigated under the different sampling schemes. In addition to simulation studies, the proposed model is applied to functional Magnetic Resonance Imaging scans, collected within the Human Connectome Project, for functional connectivity investigation.

stat.ME

HierLPR: Decision making in hierarchical multi-label classification with local precision rates

In this article we propose a novel ranking algorithm, referred to as HierLPR, for the multi-label classification problem when the candidate labels follow a known hierarchical structure. HierLPR is motivated by a new metric called eAUC that we design to assess the ranking of classification decisions. This metric, associated with the hit curve and local precision rate, emphasizes the accuracy of the first calls. We show that HierLPR optimizes eAUC under the tree constraint and some light assumptions on the dependency between the nodes in the hierarchy. We also provide a strategy to make calls for each node based on the ordering produced by HierLPR, with the intent of controlling FDR or maximizing F-score. The performance of our proposed methods is demonstrated on synthetic datasets as well as a real example of disease diagnosis using NCBI GEO datasets. In these cases, HierLPR shows a favorable result over competing methods in the early part of the precision-recall curve.

stat.ML

Sensible Functional Linear Discriminant Analysis

The focus of this paper is to extend Fisher's linear discriminant analysis (LDA) to both densely re-corded functional data and sparsely observed longitudinal data for general $c$-category classification problems. We propose an efficient approach to identify the optimal LDA projections in addition to managing the noninvertibility issue of the covariance operator emerging from this extension. A conditional expectation technique is employed to tackle the challenge of projecting sparse data to the LDA directions. We study the asymptotic properties of the proposed estimators and show that asymptotically perfect classification can be achieved in certain circumstances. The performance of this new approach is further demonstrated with numerical examples.

stat.ME

Multi-dimensional Functional Principal Component Analysis

Functional principal component analysis is one of the most commonly employed approaches in functional and longitudinal data analysis and we extend it to analyze functional/longitudinal data observed on a general $d$-dimensional domain. The computational issues emerging in the extension are fully addressed with our proposed solutions. The local linear smoothing technique is employed to perform estimation because of its capabilities of performing large-scale smoothing and of handling data with different sampling schemes (possibly on irregular domain) in addition to its nice theoretical properties. Besides taking the fast Fourier transform strategy in smoothing, the modern GPGPU (general-purpose computing on graphics processing units) architecture is applied to perform parallel computation to save computation time. To resolve the out-of-memory issue due to large-scale data, the random projection procedure is applied in the eigendecomposition step. We show that the proposed estimators can achieve the classical nonparametric rates for longitudinal data and the optimal convergence rates for functional data if the number of observations per sample is of the order $(n/ \log n)^{d/4}$. Finally, the performance of our approach is demonstrated with simulation studies and the fine particulate matter (PM 2.5) data measured in Taiwan.

stat.ME

Inverse regression for longitudinal data

Sliced inverse regression (Duan and Li [Ann. Statist. 19 (1991) 505-530], Li [J. Amer. Statist. Assoc. 86 (1991) 316-342]) is an appealing dimension reduction method for regression models with multivariate covariates. It has been extended by Ferré and Yao [Statistics 37 (2003) 475-488, Statist. Sinica 15 (2005) 665-683] and Hsing and Ren [Ann. Statist. 37 (2009) 726-755] to functional covariates where the whole trajectories of random functional covariates are completely observed. The focus of this paper is to develop sliced inverse regression for intermittently and sparsely measured longitudinal covariates. We develop asymptotic theory for the new procedure and show, under some regularity conditions, that the estimated directions attain the optimal rate of convergence. Simulation studies and data analysis are also provided to demonstrate the performance of our method.

math.ST

A functional approach to deconvolve dynamic neuroimaging data

Positron Emission Tomography (PET) is an imaging technique which can be used to investigate chemical changes in human biological processes such as cancer development or neurochemical reactions. Most dynamic PET scans are currently analyzed based on the assumption that linear first order kinetics can be used to adequately describe the system under observation. However, there has recently been strong evidence that this is not the case. In order to provide an analysis of PET data which is free from this compartmental assumption, we propose a nonparametric deconvolution and analysis model for dynamic PET data based on functional principal component analysis. This yields flexibility in the possible deconvolved functions while still performing well when a linear compartmental model setup is the true data generating mechanism. As the deconvolution needs to be performed on only a relative small number of basis functions rather than voxel by voxel in the entire 3-D volume, the methodology is both robust to typical brain imaging noise levels while also being computationally efficient. The new methodology is investigated through simulations in both 1-D functions and 2-D images and also applied to a neuroimaging study whose goal is the quantification of opioid receptor concentration in the brain.

stat.AP

Functional single index models for longitudinal data

A new single-index model that reflects the time-dynamic effects of the single index is proposed for longitudinal and functional response data, possibly measured with errors, for both longitudinal and time-invariant covariates. With appropriate initial estimates of the parametric index, the proposed estimator is shown to be $\sqrt{n}$-consistent and asymptotically normally distributed. We also address the nonparametric estimation of regression functions and provide estimates with optimal convergence rates. One advantage of the new approach is that the same bandwidth is used to estimate both the nonparametric mean function and the parameter in the index. The finite-sample performance for the proposed procedure is studied numerically.

math.ST

Covariate adjusted functional principal components analysis for longitudinal data

Classical multivariate principal component analysis has been extended to functional data and termed functional principal component analysis (FPCA). Most existing FPCA approaches do not accommodate covariate information, and it is the goal of this paper to develop two methods that do. In the first approach, both the mean and covariance functions depend on the covariate $Z$ and time scale $t$ while in the second approach only the mean function depends on the covariate $Z$. Both new approaches accommodate additional measurement errors and functional data sampled at regular time grids as well as sparse longitudinal data sampled at irregular time grids. The first approach to fully adjust both the mean and covariance functions adapts more to the data but is computationally more intensive than the approach to adjust the covariate effects on the mean function only. We develop general asymptotic theory for both approaches and compare their performance numerically through simulation studies and a data set.

math.ST