arXiv subjects

Cian O'Donnell

Publications and source records attributed to Cian O'Donnell.

6 recordsLinked to original sources

arXiv2026

Energy budgets govern synaptic precision and its regulation during plasticity

Synaptic transmission must balance the need for reliable signalling against the metabolic cost of achieving that reliability. How energetic constraints shape synaptic precision and its regulation during plasticity remains unclear. Here we develop an energy--constrained framework in which synapses minimise postsynaptic response variance subject to a fixed mean and an effective energy budget. Combinations of candidate physiological costs are used to estimate an energy cost for synaptic transmission; this cost is then inferred from quantal statistics. Analysing five published pre- and post-plasticity datasets, we find that observed synaptic mean--variance pairs cluster near a minimal-energy boundary, indicating that precision is limited by energetic availability. Model comparison identifies a dominant calcium pump-like cost paired with a smaller vesicle turnover-like cost, yielding a separable precision--energy relationship, $σ^{-2} \propto E^5$. We further show that plasticity systematically updates synaptic energy budgets according to the scale-free magnitude of mean change, enabling accurate prediction of post-plasticity variance from energy allocation alone. These results provide direct experimental support for the hypothesis that synaptic precision is governed by energy budgets, establishing energy allocation as a fundamental principle linking metabolic constraints, synaptic reliability, and plasticity.

q-bio.NC↗

arXiv2024

Signatures of Bayesian inference emerge from energy efficient synapses

Biological synaptic transmission is unreliable, and this unreliability likely degrades neural circuit performance. While there are biophysical mechanisms that can increase reliability, for instance by increasing vesicle release probability, these mechanisms cost energy. We examined four such mechanisms along with the associated scaling of the energetic costs. We then embedded these energetic costs for reliability in artificial neural networks (ANN) with trainable stochastic synapses, and trained these networks on standard image classification tasks. The resulting networks revealed a tradeoff between circuit performance and the energetic cost of synaptic reliability. Additionally, the optimised networks exhibited two testable predictions consistent with pre-existing experimental data. Specifically, synapses with lower variability tended to have 1) higher input firing rates and 2) lower learning rates. Surprisingly, these predictions also arise when synapse statistics are inferred through Bayesian inference. Indeed, we were able to find a formal, theoretical link between the performance-reliability cost tradeoff and Bayesian inference. This connection suggests two incompatible possibilities: evolution may have chanced upon a scheme for implementing Bayesian inference by optimising energy efficiency, or alternatively, energy efficient synapses may display signatures of Bayesian inference without actually using Bayes to reason about uncertainty.

q-bio.NC↗

arXiv2024

BrainSLAM: SLAM on Neural Population Activity Data

Simultaneous localisation and mapping (SLAM) algorithms are commonly used in robotic systems for learning maps of novel environments. Brains also appear to learn maps, but the mechanisms are not known and it is unclear how to infer these maps from neural activity data. We present BrainSLAM; a method for performing SLAM using only population activity (local field potential, LFP) data simultaneously recorded from three brain regions in rats: hippocampus, prefrontal cortex, and parietal cortex. This system uses a convolutional neural network (CNN) to decode velocity and familiarity information from wavelet scalograms of neural local field potential data recorded from rats as they navigate a 2D maze. The CNN's output drives a RatSLAM-inspired architecture, powering an attractor network which performs path integration plus a separate system which performs `loop closure' (detecting previously visited locations and correcting map aliasing errors). Together, these three components can construct faithful representations of the environment while simultaneously tracking the animal's location. This is the first demonstration of inference of a spatial map from brain recordings. Our findings expand SLAM to a new modality, enabling a new method of mapping environments and facilitating a better understanding of the role of cognitive maps in navigation and decision making.

cs.RO↗

arXiv2023

Nonlinear slow-timescale mechanisms in synaptic plasticity

Learning and memory relies on synapses changing their strengths in response to neural activity. However there is a substantial gap between the timescales of neural electrical dynamics (1-100 ms) and organism behaviour during learning (seconds-minutes). What mechanisms bridge this timescale gap? What are the implications for theories of brain learning? Here I first cover experimental evidence for slow-timescale factors in plasticity induction. Then I review possible underlying cellular and synaptic mechanisms, and insights from recent computational models that incorporate such slow-timescale variables. I conclude that future progress on understanding brain learning across timescales will require both experimental and computational modelling studies that map out the nonlinearities implemented by both fast and slow plasticity mechanisms at synapses, and crucially, their joint interactions.

q-bio.NC↗

arXiv2023

Adaptive Estimators Show Information Compression in Deep Neural Networks

To improve how neural networks function it is crucial to understand their learning process. The information bottleneck theory of deep learning proposes that neural networks achieve good generalization by compressing their representations to disregard information that is not relevant to the task. However, empirical evidence for this theory is conflicting, as compression was only observed when networks used saturating activation functions. In contrast, networks with non-saturating activation functions achieved comparable levels of task performance but did not show compression. In this paper we developed more robust mutual information estimation techniques, that adapt to hidden activity of neural networks and produce more sensitive measurements of activations from all functions, especially unbounded functions. Using these adaptive estimation techniques, we explored compression in networks with a range of different activation functions. With two improved methods of estimation, firstly, we show that saturation of the activation function is not required for compression, and the amount of compression varies between different activation functions. We also find that there is a large amount of variation in compression between different network initializations. Secondary, we see that L2 regularization leads to significantly increased compression, while preventing overfitting. Finally, we show that only compression of the last layer is positively correlated with generalization.

cs.LG↗

arXiv2021

Neural circuit function redundancy in brain disorders

Redundancy is a ubiquitous property of the nervous system. This means that vastly different configurations of cellular and synaptic components can enable the same neural circuit functions. However, until recently very little brain disorder research considered the implications of this characteristic when designing experiments or interpreting data. Here, we first summarise the evidence for redundancy in healthy brains, explaining redundancy and three of its sub-concepts: sloppiness, dependencies, and multiple solutions. We then lay out key implications for brain disorder research, covering recent examples of redundancy effects in experimental studies on psychiatric disorders. Finally, we give predictions for future experiments based on these concepts.

q-bio.NC↗