arXiv subjects

Cody D. Schimming

Publications and source records attributed to Cody D. Schimming.

15 recordsLinked to original sources

arXiv2026

Guiding isotropic active fluids with anisotropic friction

Inspired by recent experiments of cells accumulating on anisotropic substrates, we study a two-dimensional, compressible, isotropic, active fluid in the presence of anisotropic friction. We find that regions of anisotropic friction that are patterned as positive topological defects may drive accumulation of an active fluid into a clump, but the robustness of this behavior depends on the initial configuration. If the initial azimuthal symmetry is sufficiently broken, we find that patterning asymmetry can instead lead to circular motion of accumulated clumps. We develop an approximate analytical model to qualitatively explain the motion. Finally, we use our simplified model to design a substrate pattern that creates directed motion of accumulated clusters along a given path.

cond-mat.soft↗

arXiv2025

Defect Interactions Through Periodic Boundaries in Two-Dimensional $p$-atics

Periodic boundary conditions are a common theoretical and computational tool used to emulate effectively infinite domains. However, two-dimensional periodic domains are topologically distinct from the infinite plane, eliciting the question: How do periodic boundaries affect systems with topological properties themselves? In this work, I derive an analytical expression for the orientation fields of two-dimensional $p$-atic liquid crystals, systems with $p$-fold rotational symmetry, with topological defects in a flat domain subject to periodic boundary conditions. I show that this orientation field leads to an anomalous interaction between defects that deviates from the usual Coulomb interaction, which is confirmed through continuum simulations of nematic liquid crystals ($p = 2$). The interaction is understood as being mediated by non-singular topological solitons in the director field which are stabilized by the periodic boundary conditions. The results show the importance of considering domain topology, not only geometry, when analyzing interactions between topological defects.

cond-mat.soft↗

arXiv2025

Turbulence to order transitions in activity patterned active nematics

We numerically study two-dimensional active nematics with periodic activity patterning. For stripes of activity, we observe a transition from two-dimensional to one-dimensional active turbulence as the maximum active force and distance between activity stripes increases, followed by a transition to stable vortices ordered antiferromagnetically along the stripes and ferromagnetically transverse to the stripes. By comparing to a triangular lattice of activity circles, we find that transitions to two-dimensional active turbulence emerge from interplays between the active length scale and activity density, independent of the patterning geometry. The vortex ordering, on the other hand, is highly sensitive to patterning geometry, which we show by comparing the activity stripes to columns of activity circles, where the vortex ordering is lost. Our results provide a mechanism for inducing non-equilibrium phase transitions in active nematics using activity inhomogeneity, which can be further exploited to create activity patterned ordered phases.

cond-mat.soft↗

arXiv2024

Analytical model for the motion and interaction of two-dimensional active nematic defects

We develop an approximate, analytical model for the velocity of defects in active nematics by combining recent results for the velocity of topological defects in nematic liquid crystals with the flow field generated from individual defects in active nematics. Importantly, our model takes into account the long-range interactions between defects that result from the flows they produce as well as the orientational coupling between defects inherent in nematics. Our work complements previous studies of active nematic defect motion by introducing a linear approximation that allows us to treat defect interactions as two-body interactions and incorporates the hydrodynamic screening length as a tuning parameter. We show that the model can analytically predict bound states between two $+1/2$ winding number defects, effective attraction between two $-1/2$ defects, and the scaling of a critical unbinding length between $\pm 1/2$ defects with activity. The model also gives predictions for the trajectories of defects, such as the scattering of $+1/2$ defects by $-1/2$ defects at a critical impact parameter that depends on activity. In the presence of circular confinement, the model predicts a braiding motion for three $+1/2$ defects that was recently seen in experiments, as well as stable and ergodic trajectories for four or more defects.

cond-mat.soft↗

arXiv2024

Approach and rotation of reconnecting topological defect lines in liquid crystal

Topological defects are a universal concept across many disciplines, such as crystallography, liquid-crystalline physics, low-temperature physics, cosmology, and even biology. In nematic liquid crystals, topological defects called disclinations have been widely studied. For their three-dimensional (3D) dynamics, however, only recently have theoretical approaches dealing with fully 3D configurations been reported. Further, recent experiments have observed 3D disclination line reconnections, a phenomenon characteristic of defect line dynamics, but detailed discussions were limited to the case of approximately parallel defects. In this study, we focus on the case of two disclination lines that approach at finite angles and lie in separate planes, a more fundamentally 3D reconnection configuration. Observing and analyzing such reconnection events, we find the square-root law of the distance between disclinations and the decrease of the inter-disclination angle over time. We compare the experimental results with theory and find qualitative agreement on the scaling of distance and angle with time, but quantitative disagreement on distance and angle relative mobilities. To probe this disagreement, we derive the equations of motion for systems with reduced twist constant and also carry out simulations for this case. These, together with the experimental results, suggest that deformations of disclinations may be responsible for the disagreement.

cond-mat.soft↗

arXiv2024

Active Nematic Ratchet in Asymmetric Obstacle Arrays

We numerically investigate the effect of a periodic array of asymmetric obstacles in a two-dimensional active nematic. We find that activity in conjunction with the asymmetry leads to a ratchet effect or unidirectional flow of the fluid along the asymmetry direction. The directional flow is still present even in the active turbulent phase when the gap between obstacles is sufficiently small. We demonstrate that the dynamics of the topological defects transition from flow-mirroring to smectic-like as the gap between obstacles is made smaller, and explain this transition in terms of the pinning of negative winding number defects between obstacles. This also leads to a non-monotonic ratchet effect magnitude as a function of obstacle size, so that there is an optimal obstacle size for ratcheting at fixed activity.

cond-mat.soft↗

arXiv2023

Friction mediated phase transition in confined active nematics

Using a minimal continuum model, we investigate the interplay between circular confinement and substrate friction in active nematics. Upon increasing the friction from low to high, we observe a dynamical phase transition from a circulating flow phase to an anisotropic flow phase in which the flow tends to align perpendicular to the nematic director at the boundary. We demonstrate that both the flow structure and dynamic correlations in the latter phase differ from those of an unconfined, active turbulent system and may be controlled by the prescribed nematic boundary conditions. Our results show that substrate friction and geometric confinement act as valuable control parameters in active nematics.

cond-mat.soft↗

arXiv2023

Vortex Lattices in Active Nematics with Periodic Obstacle Arrays

We numerically model a two-dimensional active nematic confined by a periodic array of fixed obstacles. Even in the passive nematic, the appearance of topological defects is unavoidable due to planar anchoring by the obstacle surfaces. We show that a vortex lattice state emerges as activity is increased, and that this lattice may be tuned from ``ferromagnetic'' to ``antiferromagnetic'' by varying the gap size between obstacles. We map the rich variety of states exhibited by the system as a function of distance between obstacles and activity, including a pinned defect state, motile defects, the vortex lattice, and active turbulence. We demonstrate that the flows in the active turbulent phase can be tuned by the presence of obstacles, and explore the effects of a frustrated lattice geometry on the vortex lattice phase.

cond-mat.soft↗

arXiv2023

A tensor density measure of topological charge in three dimensional nematic phases

A path independent measure in order parameter space is introduced such that, when integrated along any closed contour in a three dimensional nematic phase, it yields the topological charge of any line defects encircled by the contour. A related measure, when integrated over either closed or open surfaces, reduces to known results for the charge associated with point defects (hedgehogs) or Skyrmions. We further define a tensor density, the disclination density tensor $\mathbf{D}$, from which the location of a disclination line can be determined. This tensor density has a dyadic decomposition near the line into its tangent and its rotation vector, allowing a convenient determination of both. The tensor $\mathbf{D}$ may be nonzero in special configurations in which there are no defects (double-splay or double-twist configurations), and its behavior there is provided. The special cases of Skyrmions and hedgehog defects are also examined, including the computation of their topological charge from $ \mathbf{D}$.

cond-mat.soft↗

arXiv2022

Kinematics and dynamics of disclination lines in three-dimensional nematics

An exact kinematic law for the motion of disclination lines in nematic liquid crystals as a function of the tensor order parameter $\mathbf{Q}$ is derived. Unlike other order parameter fields that become singular at their respective defect cores, the tensor order parameter remains regular. Following earlier experimental and theoretical work, the disclination core is defined to be the line where the uniaxial and biaxial order parameters are equal, or equivalently, where the two largest eigenvalues of $\mathbf{Q}$ cross. This allows an exact expression relating the velocity of the line to spatial and temporal derivatives of $\mathbf{Q}$ on the line, to be specified by a dynamical model for the evolution of the nematic. By introducing a linear core approximation for $\mathbf{Q}$, analytical results are given for several prototypical configurations, including line interactions and motion, loop annihilation, and the response to external fields and shear flows. Behaviour that follows from topological constraints or defect geometry is highlighted. The analytic results are shown to be in agreement with three dimensional numerical calculations based on a singular Maier-Saupe free energy that allows for anisotropic elasticity.

cond-mat.soft↗

arXiv2022

Equilibrium morphology of tactoids in elastically anisotropic nematics

We study two dimensional tactoids in nematic liquid crystals by using a $\mathbf{Q}$-tensor representation. A bulk free energy of the Maier-Saupe form with eigenvalue constraints on $\mathbf{Q}$, plus elastic terms up to cubic order in $\mathbf{Q}$ are used to understand the effects of anisotropic anchoring and Frank-Oseen elasticity on the morphology of nematic-isotropic domains. Further, a volume constraint is introduced to stabilize tactoids of any size at coexistence. We find that anisotropic anchoring results in differences in interface thickness depending on the relative orientation of the director at the interface, and that interfaces become biaxial for tangential alignment when anisotropy is introduced. For negative tactoids, surface defects induced by boundary topology become sharper with increasing elastic anisotropy. On the other hand, by parametrically studying their energy landscape, we find that surface defects do not represent the minimum energy configuration in positive tactoids. Instead, the interplay between Frank-Oseen elasticity in the bulk, and anisotropic anchoring yields semi-bipolar director configurations with non-circular interface morphology. Finally, we find that for growing tactoids the evolution of the director configuration is highly sensitive to the anisotropic term included in the free energy, and that minimum energy configurations may not be representative of kinetically obtained tactoids at long times.

cond-mat.soft↗

arXiv2022

Singularity identification for the characterization of topology, geometry, and motion of nematic disclination lines

We introduce a characterization of disclination lines in three dimensional nematic liquid crystals as a tensor quantity related to the so called rotation vector around the line. This quantity is expressed in terms of the nematic tensor order parameter $\mathbf{Q}$, and shown to decompose as a dyad involving the tangent vector to the disclination line and the rotation vector. Further, we derive a kinematic law for the velocity of disclination lines by connecting this tensor to a topological charge density as in the Halperin-Mazenko description of defects in vector models. Using this framework, analytical predictions for the velocity of interacting line disclinations and of self-annihilating disclination loops are given and confirmed through numerical computation.

cond-mat.soft↗

arXiv2021

Numerical method for the equilibrium configurations of a Maier-Saupe bulk potential in a Q-tensor model of an anisotropic nematic liquid crystal

We present a numerical method, based on a tensor order parameter description of a nematic phase, that allows fully anisotropic elasticity. Our method thus extends the Landau-de Gennes $\mathbf{Q}$-tensor theory to anisotropic phases. A microscopic model of the nematogen is introduced (the Maier-Saupe potential in the case discussed in this paper), combined with a constraint on eigenvalue bounds of $\mathbf{Q}$. This ensures a physically valid order parameter $\mathbf{Q}$ (i.e., the eigenvalue bounds are maintained), while allowing for more general gradient energy densities that can include cubic nonlinearities, and therefore elastic anisotropy. We demonstrate the method in two specific two dimensional examples in which the Landau-de Gennes model including elastic anisotropy is known to fail, as well as in three dimensions for the cases of a hedgehog point defect, a disclination line, and a disclination ring. The details of the numerical implementation are also discussed.

cond-mat.soft↗

arXiv2020

Anisotropic disclination cores in nematic liquid crystals modelled by a self consistent molecular field theory

Disclination configurations of a nematic liquid crystal are studied within a self-consistent molecular field theory. The theory is based on a tensor order parameter, and can accommodate anisotropic elastic energies without the known divergences in the Landau-de Gennes formulation. Our results agree with the asymptotic results of Dzyaloshinsky for the Frank-Oseen energy and far from the defect core, but reveal biaxial order at intermediate distances from the core, crossing over to uniaxial, but isotropic configurations as the core is approached. The elastic terms considered in our energy allow for separate control of surface tension, anchoring, and elasticity contrast, and are used to analyze recent results for lyotropic chromonic liquid crystals. The latter display unusually large defect cores (on the order of tens of microns) which can be used for a quantitative comparison with the theory. Both $\pm 1/2$ disclination configurations are well reproduced by our calculations. Elastic anisotropy is also shown to lead to qualitative changes in the disclination polarization, a quantity that is proportional to the active stress in models of active matter.

cond-mat.soft↗

arXiv2020

Computational molecular field theory for nematic liquid crystals

Nematic liquid crystals exhibit configurations in which the underlying ordering changes markedly on macroscopic length scales. Such structures include topological defects in the nematic phase and tactoids within nematic-isotropic coexistence. We discuss a computational study of inhomogeneous configurations that is based on a field theory extension of the Maier-Saupe molecular model of a uniaxial, nematic liquid crystal. A tensor order parameter is defined as the second moment of an orientational probability distribution, leading to a free energy that is not convex within the isotropic-nematic coexistence region, and that goes to infinity if the eigenvalues of the order parameter become non-physical. Computations of the spatial profile of the order parameter are presented for an isotropic-nematic interface in one dimension, a tactoid in two dimensions, and a nematic disclination in two dimensions. We compare our results to those given by the Landau de-Gennes free energy for the same configurations and discuss the advantages of such a model over the latter.

cond-mat.soft↗