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Connie Stewart

Publications and source records attributed to Connie Stewart.

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A Jensen-Shannon divergence based $k$--$NN$ algorithm for missing value imputation in compositional data

A novel nonparametric method to impute missing values in compositional data is developed. The method is based on the $k$--$NN$ algorithm, utilizes the Jensen-Shannon divergence and employs the Fr{\'e}chet mean to allow for more flexibility in the estimation process. As an extra feature, the hyper-parameters can be self-adaptive according to the pattern of missing values. Unlike restrictive parametric models, the proposed method makes no assumption about the structure of the data and, most importantly, it is applicable even when compositional data contain zero values. Through simulation studies using real data, it is shown that the proposed algorithm outperforms competing algorithms at various settings, not only in terms of accuracy but also in terms of computational efficiency.

stat.ME

Flexible non-parametric regression models for compositional data

Compositional data arise in many real-life applications and versatile methods for properly analyzing this type of data in the regression context are needed. When parametric assumptions do not hold or are difficult to verify, non-parametric regression models can provide a convenient alternative method for prediction. To this end, we consider an extension to the classical $k$--$NN$ regression, termed $α$--$k$--$NN$ regression, that yields a highly flexible non-parametric regression model for compositional data through the use of the $α$-transformation. Unlike many of the recommended regression models for compositional data, zeros values (which commonly occur in practice) are not problematic and they can be incorporated into the proposed models without modification. Extensive simulation studies and real-life data analyses highlight the advantage of using these non-parametric regressions for complex relationships between the compositional response data and Euclidean predictor variables. Both suggest that $α$--$k$--$NN$ regression can lead to more accurate predictions compared to current regression models which assume a, sometimes restrictive, parametric relationship with the predictor variables. In addition, the $α$--$k$--$NN$ regression, in contrast to current regression techniques, enjoys a high computational efficiency rendering it highly attractive for use with large scale, massive, or big data.

stat.ME

A folded model for compositional data analysis

A folded type model is developed for analyzing compositional data. The proposed model involves an extension of the $α$-transformation for compositional data and provides a new and flexible class of distributions for modeling data defined on the simplex sample space. Despite its rather seemingly complex structure, employment of the EM algorithm guarantees efficient parameter estimation. The model is validated through simulation studies and examples which illustrate that the proposed model performs better in terms of capturing the data structure, when compared to the popular logistic normal distribution, and can be advantageous over a similar model without folding.

stat.ML

A Dirichlet Regression Model for Compositional Data with Zeros

Compositional data are met in many different fields, such as economics, archaeometry, ecology, geology and political sciences. Regression where the dependent variable is a composition is usually carried out via a log-ratio transformation of the composition or via the Dirichlet distribution. However, when there are zero values in the data these two ways are not readily applicable. Suggestions for this problem exist, but most of them rely on substituting the zero values. In this paper we adjust the Dirichlet distribution when covariates are present, in order to allow for zero values to be present in the data, without modifying any values. To do so, we modify the log-likelihood of the Dirichlet distribution to account for zero values. Examples and simulation studies exhibit the performance of the zero adjusted Dirichlet regression.

stat.ME