arXiv subjects

Cordero Core

Publications and source records attributed to Cordero Core.

3 recordsLinked to original sources

arXiv2026

Aleena: Alignment Agent for Research Software Engineering Collaborations

Research software collaborations span meetings, informal chats, pull requests, and GitHub issues. A decision surfaced in a Slack thread, refined in a meeting, and implemented in a pull request can lose its original rationale across these artifacts, leaving domain researchers and research software engineers with divergent mental models of project intent, ownership, and scientific assumptions. We argue that alignment in research software engineering is a continuous lifecycle problem, and that agentic AI can support stakeholder alignment and project-state tracking without replacing human decision-making. We present Aleena, an open-source lifecycle alignment agent that uses GitHub as a shared collaboration surface, transforming multi-modal stakeholder interactions into structured project records that surface risks, track open questions, and preserve decision continuity. Grounded in university-based research software engineering center experiences, this paper presents the motivating problem, system design, prototype, and illustrative lifecycle scenarios for Aleena.

cs.SE↗

arXiv2026

LLMoxie: Exploring Agentic AI for Scientific Software Development

In this paper, we describe LLMoxie, an institutional AI platform whose three-tiered architecture supports multi-cloud and on-premise inference, a LiteLLM/MLflow control plane for authentication, budgeting, PII masking, and observability, and an application augmentation layer for AI coding agents. Layered on top, an open-source RSE-Plugins ecosystem encodes accumulated RSE knowledge as a Plugin-Agent-Skill hierarchy spanning scientific Python practice, domain-specific knowledge, a six-phase research-and-implement workflow, and project lifecycle management. Scientific software is judged less by raw code quality than by whether it can be cited, audited, reproduced, and extended. Off-the-shelf AI coding agents, optimized against commercial software benchmarks, are poorly calibrated for this setting: they ignore the conventions of the scientific Python libraries they invoke, mishandle sensitive or embargoed data, and leave decision trails that are difficult to reconstruct after the fact. We report on twenty months of practice at a university-based research software engineering (RSE) center, where RSEs embedded across astronomy, earth and climate science, agriculture, and health projects worked to close this gap. We characterize the recurring infrastructure, governance, and process challenges of adopting Agentic AI inside a multi-domain RSE center, describe the platform and plugin design, and distill operational lessons from real scientific software deployments. Together, the platform and plugins shift AI coding agents from generic code generators into domain-aware collaborators that respect community norms and produce auditable provenance of technical reasoning.

cs.SE↗

arXiv2024

Caustics: A Python Package for Accelerated Strong Gravitational Lensing Simulations

Gravitational lensing is the deflection of light rays due to the gravity of intervening masses. This phenomenon is observed in a variety of scales and configurations, involving any non-uniform mass such as planets, stars, galaxies, clusters of galaxies, and even the large scale structure of the universe. Strong lensing occurs when the distortions are significant and multiple images of the background source are observed. The lens objects must align on the sky of order ~1 arcsecond for galaxy-galaxy lensing, or 10's of arcseonds for cluster-galaxy lensing. As the discovery of lens systems has grown to the low thousands, these systems have become pivotal for precision measurements and addressing critical questions in astrophysics. Notably, they facilitate the measurement of the Universe's expansion rate, dark matter, supernovae, quasars, and the first stars among other topics. With future surveys expected to discover hundreds of thousands of lensing systems, the modelling and simulation of such systems must occur at orders of magnitude larger scale then ever before. Here we present `caustics`, a Python package designed to handle the extensive computational demands of modeling such a vast number of lensing systems.

astro-ph.IM↗