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Cristobal Lopez

Publications and source records attributed to Cristobal Lopez.

At least 19 recordsLinked to original sources

A Comparative Analysis of Clustering Algorithms for Characterizing Surface Ocean Variability in the Western Mediterranean

Understanding regional dynamical structures in the sea is fundamental to characterize energy transfer and transport properties, with implications in physical and biogeochemical modeling and characterization. In this work, we study the potential of clustering techniques to identify regional patterns, persistent or recurrent configurations, out of daily snapshots of sea surface temperature and kinetic energy in a region of the western Mediterranean Sea. From the methodological perspective, we use different clustering techniques: K-means, Self-Organizing Maps and InfoMap to verify if the patterns found are coherent across methods. Our results show that K-means and Self-Organizing Maps consistently delineate four distinct clusters of sea surface temperature configurations, aligned with the seasons even after removing the annual cycle, which indicates the persistence of seasonal structures beyond a mean effect in the temperature field. The study of surface kinetic energy, characterized by higher spatial and temporal variability, reveals more complex circulation regimes. While K-means and Self-Organizing Maps provide a robust and convergent classification of the dominant large-scale energy patterns, InfoMap uncovers finer-scale features such as localized jets and eddies. InfoMap, in particular, provides a complementary perspective to the partition-based methods, validating subtle yet significant hydrodynamic structures and acting as an anomaly detector for extreme events.

physics.ao-ph

Lagrangian betweenness as a measure of bottlenecks in dynamical systems with oceanographic examples

The study of connectivity patterns in networks has brought novel insights across diverse fields ranging from neurosciences to epidemic spreading or climate. In this context, betweenness centrality has demonstrated to be a very effective measure to identify nodes that act as focus of congestion, or bottlenecks, in the network. However, there is not a way to define betweenness outside the network framework. By analytically linking dynamical systems and network theory, we provide a trajectory-based formulation of betweenness, called Lagrangian betweenness, as a function of Lyapunov exponents. This extends the concept of betweenness beyond the context of network theory relating hyperbolic points and heteroclinic connections in any dynamical system to the structural bottlenecks of the network associated with it. Using modeled and observational velocity fields, we show that such bottlenecks are present and surprisingly persistent in the oceanic circulation across different spatio-temporal scales and we illustrate the role of these areas in driving fluid transport over vast oceanic regions. Analyzing plankton abundance data from the Kuroshio region of the Pacific Ocean, we find significant spatial correlations between measures of diversity and betweenness, suggesting promise for ecological applications.

physics.ao-ph

Spatial inhomogeneities in the sedimentation of biogenic particles in ocean flows: analysis in the Benguela region

Sedimentation of particles in the ocean leads to inhomogeneous horizontal distributions at depth, even if the release process is homogeneous. We study this phenomenon considering a horizontal sheet of sinking particles immersed in an oceanic flow, and determine how the particles are distributed when they sediment on the seabed (or are collected at a given depth). The study is performed from a Lagrangian viewpoint attending to the properties of the oceanic flow and the physical characteristics (size and density) of typical biogenic sinking particles. Two main processes determine the distribution, the stretching of the sheet caused by the flow and its projection on the surface where particles accumulate. These mechanisms are checked, besides an analysis of their relative importance to produce inhomogeneities, with numerical experiments in the Benguela region. Faster (heavier or larger) sinking particles distribute more homogeneously than slower ones.

physics.ao-ph

Crossroads of the mesoscale circulation

Quantifying the mechanisms of tracer dispersion in the ocean remains a central question in oceanography, for problems ranging from nutrient delivery to phytoplankton, to the early detection of contaminants. Most analyses have been based on Lagrangian concepts of transport, focusing on the identification of features minimizing fluid exchange among regions, or more recently on network tools which focus on connectivity and transport pathways. Neither of these approaches allows ranking the geographical sites of major water passage and selecting them so that they monitor waters coming from separate parts of the ocean. These are instead key criteria when deploying an observing network. Here we address this issue by estimating at any point the extent of the ocean surface which transits through it in a given time window. With such information we are able to rank the sites with major fluxes that intercept waters originating from different regions. We show that this allows us to optimize an observing network, where a set of sampling sites can be chosen for monitoring the largest flux of water dispersing out of a given region. When the analysis is performed backward in time, this method allows us to identify the major sources which feed a target region. The method is first applied to a minimalistic model of a mesoscale eddy field, and then to realistic satellite-derived ocean currents in the Kerguelen area. In this region we identify the optimal location of fixed stations capable of intercepting the trajectories of 43 surface drifters, along with statistics on the temporal persistence of the stations determined in this way. We then identify possible hotspots of micro-nutrient enrichment for the recurrent spring phytoplanktonic bloom occuring here. Promising applications to other fields, such as larval connectivity, marine spatial planning or contaminant detection, are then discussed.

physics.ao-ph

Cluster crystals for Brownian particles with combined soft and hard-core repulsive interactions

Particle systems interacting with a soft repulsion, at thermal equilibrium and under some circumstances, are known to form cluster crystals, i.e. periodic arrangements of particle aggregates. We study here how these states are modified by the presence of an additional hard-core repulsion, accounting for particle size. To this end we consider a two-dimensional system of Brownian particles interacting through a potential which includes a hard-core and a soft-core (of the GEM-α type) repulsive terms. The system shows different phases, and we focus in the regime where cluster crystals form. We consider two situations: the low-temperature one in which particles inside the clusters also show an ordered structure (crystal cluster-crystal phase), and the one occurring at higher temperature in which particles within the clusters are spatially disordered (fluid cluster crystal). An explicit expression for the energy in terms of the typical distance among clusters and the typical distance of the particles within the clusters is obtained for vanishing temperature, which helps to understand the balance between the different forces involved. Finite-temperature corrections are also discussed.

cond-mat.stat-mech

From scale-dependent feedbacks to long-range competition alone: a short review on pattern-forming mechanisms in arid ecosystems

Vegetation patterns are abundant in arid and semiarid ecosystems, but how they form remains unclear. One of the most extended theories lies in the existence of scale-dependent feedbacks (SDF) in plant-to-plant and plant-water interactions. Short distances are dominated by facilitative interactions, whereas competitive interactions dominate at larger scales. These feedbacks shape spatially inhomogeneous distributions of water that ultimately drive the emergence of patterns of vegetation. Even though the presence of facilitative and competitive interactions is clear, they are often hard to disentangle in the field, and therefore their relevance in vegetation pattern formation is still disputable. Here, we review the biological processes that have been proposed to explain pattern formation in arid ecosystems and how they have been implemented in mathematical models. We conclude by discussing the existence of similar structures in different biological and physical systems.

q-bio.PE

Characterization of the structure and cross-shore transport properties of a coastal upwelling filament using three-dimensional finite-size Lyapunov exponents

The three dimensional structure, dynamics and dispersion characteristics of a simulated upwelling filament in the Iberian upwelling system are analyzed using Lagrangian tools. We used a realistic regional simulation of the western Iberian shelf which is concomitant with an in-situ oceanographic campaign that surveyed the area. We compute 3d fields of finite--size Lyapunov exponents (FSLE) from 3d velocity fields and extract the field's ridges to study the spatial distribution and temporal evolution of the Lagrangian Coherent Structures (LCSs) evolving around the filament. We find that the most intense curtain-like LCSs delimit the boundaries of the whole filamentary structure whose general properties match well the observations. The filament interior is characterized by small dispersion of fluid elements. Furthermore, we identify a weak LCS separating the filament into a warmer vein and a colder filament associated with the interaction of a mesoscale eddy with the upwelling front. The cold upwelled water parcels move along the filament conserving their density. The filament itself is characterized by small dispersion of fluid elements in its interior. The comparison of LCSs with potential temperature and salinity gradient fields shows that the outer limits of the filament coincide with regions of large hydrographic gradients, similar to those observed, explaining the isolation of the interior of the filament with the surrounding waters. We conclude that the Lagrangian analysis used in this work is useful in explaining the dynamics of cross-shore exchanges of materials between coastal regions and the open ocean due to mesoscale processes.

physics.ao-ph

Lagrangian Flow Network approach to an open flow model

Concepts and tools from network theory, the so-called Lagrangian Flow Network framework, have been successfully used to obtain a coarse-grained description of transport by closed fluid flows. Here we explore the application of this methodology to open chaotic flows, and check it with numerical results for a model open flow, namely a jet with a localized wave perturbation. We find that network nodes with high values of out-degree and of finite-time entropy in the forward-in-time direction identify the location of the chaotic saddle and its stable manifold, whereas nodes with high in-degree and backwards finite-time entropy highlight the location of the saddle and its unstable manifold. The cyclic clustering coefficient, associated to the presence of periodic orbits, takes non-vanishing values at the location of the saddle itself.

physics.flu-dyn

Online games: a novel approach to explore how partial information influences human random searches

Many natural processes rely on optimizing the success ratio of a search process. We use an experimental setup consisting of a simple online game in which players have to find a target hidden on a board, to investigate the how the rounds are influenced by the detection of cues. We focus on the search duration and the statistics of the trajectories traced on the board. The experimental data are explained by a family of random-walk-based models and probabilistic analytical approximations. If no initial information is given to the players, the search is optimized for cues that cover an intermediate spatial scale. In addition, initial information about the extension of the cues results, in general, in faster searches. Finally, strategies used by informed players turn into non-stationary processes in which the length of each displacement evolves to show a well-defined characteristic scale that is not found in non-informed searches.

physics.bio-ph

Most probable paths in temporal weighted networks: An application to ocean transport

We consider paths in weighted and directed temporal networks, introducing tools to compute sets of paths of high probability. We quantify the relative importance of the most probable path between two nodes with respect to the whole set of paths, and to a subset of highly probable paths which incorporate most of the connection probability. These concepts are used to provide alternative definitions of betweenness centrality. We apply our formalism to a transport network describing surface flow in the Mediterranean sea. Despite the full transport dynamics is described by a very large number of paths we find that, for realistic time scales, only a very small subset of high probability paths (or even a single most probable one) is enough to characterize global connectivity properties of the network.

physics.soc-ph

Flow networks: A characterization of geophysical fluid transport

We represent transport between different regions of a fluid domain by flow networks, constructed from the discrete representation of the Perron-Frobenius or transfer operator associated to the fluid advection dynamics. The procedure is useful to analyze fluid dynamics in geophysical contexts, as illustrated by the construction of a flow network associated to the surface circulation in the Mediterranean sea. We use network-theory tools to analyze the flow network and gain insights into transport processes. In particular we quantitatively relate dispersion and mixing characteristics, classically quantified by Lyapunov exponents, to the degree of the network nodes. A family of network entropies is defined from the network adjacency matrix, and related to the statistics of stretching in the fluid, in particular to the Lyapunov exponent field. Finally we use a network community detection algorithm, Infomap, to partition the Mediterranean network into coherent regions, i.e. areas internally well mixed, but with little fluid interchange between them.

physics.ao-ph

Optimal recruitment strategies for groups of interacting walkers with leaders

We introduce a model of interacting random walkers on a finite one dimensional chain with absorbing boundaries or targets at the ends. Walkers are of two types: informed particles that move ballistically towards a given target, and diffusing uninformed particles that are biased towards close informed particles. This model mimics the dynamics of hierarchical groups of animals, where an informed individual tries to persuade and lead the movement of its conspecifics. We characterize the success of the persuasion by the first-passage probability of the uninformed particle to the target, and we interpret the speed of the informed particle as a strategic parameter that the particle tunes to maximize its success. We find that the success probability is non-monotonic, reaching its maximum at an intermediate speed whose value increases with the diffusing rate of the uninformed particle. When two different groups of informed leaders traveling in opposite directions compete, usually the largest group is the most successful. However, the minority can reverse this situation and become the most probable winner by following two different strategies: increasing its attraction strength or adjusting its speed to an optimal value relative to the majority's speed.

cond-mat.stat-mech

Vegetation pattern formation in semiarid systems without facilitative mechanisms

Regular vegetation patterns in semiarid ecosystems are believed to arise from the interplay between long-range competition and facilitation processes acting at smaller distances. We show that, under rather general conditions, long-range competition alone may be enough to shape these patterns. To this end we propose a simple, general model for the dynamics of vegetation, which includes only long-range competition between plants. Competition is introduced through a nonlocal term, where the kernel function quantifies the intensity of the interaction. We recover the full spectrum of spatial structures typical of vegetation models that also account for facilitation in addition to competition.

q-bio.PE

Spatial patterns in mesic savannas: the local facilitation limit and the role of demographic stochasticity

We propose a model equation for the dynamics of tree density in mesic savannas. It considers long-range competition among trees and the effect of fire acting as a local facilitation mechanism. Despite short-range facilitation is taken to the local-range limit, the standard full spectrum of spatial structures obtained in general vegetation models is recovered. Long-range competition is thus the key ingredient for the development of patterns. The long time coexistence between trees and grass, and how fires affect the survival of trees as well as the maintenance of the patterns is studied. The influence of demographic noise is analyzed. The stochastic system, under the parameter constraints typical of mesic savannas, shows irregular patterns characteristics of realistic situations. The coexistence of trees and grass still remains at reasonable noise intensities.

nlin.PS

Spatial patterns of competing random walkers

We review recent results obtained from simple individual-based models of biological competition in which birth and death rates of an organism depend on the presence of other competing organisms close to it. In addition the individuals perform random walks of different types (Gaussian diffusion and Lévy flights). We focus on how competition and random motions affect each other, from which spatial instabilities and extinctions arise. Under suitable conditions, competitive interactions lead to clustering of individuals and periodic pattern formation. Random motion has a homogenizing effect and then delays this clustering instability. When individuals from species differing in their random walk characteristics are allowed to compete together, the ones with a tendency to form narrower clusters get a competitive advantage over the others. Mean-field deterministic equations are analyzed and compared with the outcome of the individual-based simulations.

q-bio.PE

Self-localized states in species competition

We study the conditions under which species interaction, as described by continuous versions of the competitive Lotka-Volterra model (namely the nonlocal Kolmogorov-Fisher model, and its differential approximation), can support the existence of localized states, i.e. patches of species with enhanced population surrounded in niche space by species at smaller densities. These states would arise from species interaction, and not by any preferred niche location or better fitness. In contrast to previous works we include only quadratic nonlinearities, so that the localized patches appear on a background of homogeneously distributed species coexistence, instead than on top of the no-species empty state. For the differential model we find and describe in detail the stable localized states. For the full nonlocal model, however competitive interactions alone do not allow the conditions for the observation of self-localized states, and we show how the inclusion of additional facilitative interactions lead to the appearance of them.

nlin.PS

Optimal search in interacting populations:Gaussian jumps vs Levy flights

We investigated the relationships between search efficiency, movement strategy, and non-local communication in the biological context of animal foraging. We considered situations where the members of a population of foragers perform either Gaussian jumps or Levy flights, and show that the search time is minimized when communication among individuals occurs at intermediate ranges, independently of the type of movement. Additionally, while Brownian strategies are more strongly influenced by the communication mechanism, Levy flights still result in shorter overall search durations.

cond-mat.stat-mech

Temporal disorder in up-down symmetric systems

The effect of temporal disorder on systems with up-down Z2 symmetry is studied. In particular, we analyze two well-known families of phase transitions: the Ising and the generalized voter universality classes, and scrutinize the consequences of placing them under fluctuating global conditions. We observe that variability of the control parameter induces in both classes "Temporal Griffiths Phases" (TGP). These recently-uncovered phases are analogous to standard Griffiths Phases appearing in systems with quenched spatial disorder, but where the roles of space and time are exchanged. TGPs are characterized by broad regions in parameter space in which (i) mean first-passage times scale algebraically with system size, and (ii) the system response (e.g. susceptibility) diverges. Our results confirm that TGPs are quite robust and ubiquitous in the presence of temporal disorder. Possible applications of our results to examples in ecology are discussed.

cond-mat.stat-mech