arXiv subjects

Cuifang Kuang

Publications and source records attributed to Cuifang Kuang.

12 recordsLinked to original sources

arXiv2026

Quantum tunnelling-integrated optoplasmonic nanotrap enables conductance visualisation of individual proteins

Biological electron transfer (ET) relies on quantum mechanical tunnelling through a dynamically folded protein. Yet, the spatiotemporal coupling between structural fluctuations and electron flux remains poorly understood, largely due to limitations in existing experimental techniques, such as ensemble averaging and non-physiological operating conditions. Here, we introduce a quantum tunnelling-integrated optoplasmonic nanotrap (QTOP-trap), an optoelectronic platform that combines plasmonic optical trapping with real-time quantum tunnelling measurements. This label-free approach enables single-molecule resolution of protein conductance in physiological electrolytes, achieving sub-3 nm spatial precision and 10-μs temporal resolution. By synchronising optoelectronic measurements, QTOP-trap resolves protein-specific conductance signatures and directly correlates tertiary structure dynamics with conductance using a "protein switch" strategy. This methodology establishes a universal framework for dissecting non-equilibrium ET mechanisms in individual conformational-active proteins, with broad implications for bioenergetics research and biomimetic quantum device design.

physics.bio-ph↗

arXiv2025

Beyond Autophagy: VPS39 Deficiency Triggers Migrasome-Driven Stress Adaptation Revealed by Super-Resolution Imaging

Autophagy and migrasome formation constitute critical cellular mechanisms for maintaining cellular homeostasis, however, their potential compensatory interplay remains poorly understood. In this study, we identify VPS39, a core component of the HOPS complex, as a molecular switch coordinating these processes. Genetic ablation of VPS39 not only impairs autophagic flux but also triggers cell migration through RhoA/Rac1 GTPases upregulation, consequently facilitating migrasome formation. Using super-resolution microscopy, we further demonstrate that migrasomes serve as an alternative disposal route for damaged mitochondria during VPS39-induced autophagy impairment, revealing a novel stress adaptation mechanism. Our work establishes a previously unrecognized autophagy-migrasome axis and provides direct visual evidence of organelle quality control via migrasomal extrusion. These findings position VPS39-regulated pathway switching as a potential therapeutic strategy for neurodegenerative diseases characterized by autophagy dysfunction.

q-bio.CB↗

arXiv2025

SMILE: a universal tool for modulated-enhanced localization microscopy to achieve minimal three-dimensional resolution

Modulation-enhanced localization microscopy (MELM) has demonstrated significant improvements in both lateral and axial localization precision compared to conventional single-molecule localization microscopy (SMLM). However, lateral modulated illumination based MELM (MELMxy) remains fundamentally limited to two-dimensional imaging. Here we present three-dimensional Single-Molecule Modulated Illumination Localization Estimator (SMILE) that synergistically integrates lateral illumination modulation with point spread function engineering. By simultaneously exploiting lateral modulation patterns and an accurate point spread function (PSF) model for 3D localization, SMILE achieves near-theoretical-minimum localization uncertainty, demonstrating an average 4-fold enhancement in lateral precision compared to conventional 3D-SMLM. Crucially, SMILE exhibits exceptional compatibility with diverse PSFs and different illumination patterns with various structures including 4Pi configurations, making it a versatile tool that can be easily adapted for different experimental setups. When integrated with 4Pi microscopy, 4Pi-SMILE shows particular promise for achieving sub-10 nm axial resolution and approaching isotropic resolution. From the simulations and proof-of-concept experiments, we verified the superiority of SMILE over 3D-SMLM and ordinary MELM. We highlight SMILE as a novel methodology and robust framework that holds great potential to significantly promote the development of MELM.

physics.optics↗

arXiv2024

xSCYTE: Express Single-frame Cytometer through Tomographic Phase

Rapid, comprehensive, and accurate cell phenotyping without compromising viability, is crucial to many important biomedical applications, including stem-cell therapy, drug screening, and liquid biopsy. Typical image cytometry methods acquire two-dimensional (2D) fluorescence images, where the fluorescence labelling process may damage living cells, and the information from 2D images is not comprehensive enough for precise cell analysis. Although three-dimensional (3D) label-free image cytometry holds great promise, its high throughput development faces several technical challenges. Here, we report eXpress Single-frame CYtometer through Tomographic phasE (xSCYTE), which reconstructs 3D Refractive Index (RI) maps of cells with diffraction-limited resolution. With these high-speed and high-precision imaging capabilities empowered by artificial intelligence, we envision xSCYTE may open up many new avenues of biomedical investigations and industries, such as multi-omic assays and quality control during cellular therapeutic manufacturing.

physics.optics↗

arXiv2024

Fast generation of arbitrary optical focus array

We report a novel method to generate arbitrary optical focus arrays (OFAs). Our approach rapidly produces computer-generated holograms (CGHs) to precisely control the positions and the intensities of the foci. This is achieved by replacing the fast Fourier transform (FFT) operation in the conventional iterative Fourier-transform algorithm (IFTA) with a linear algebra one, identifying/removing zero elements from the matrices, and employing a generalized weighting strategy. On the premise of accelerating the calculation speed by >70 times, we demonstrate OFA with 99% intensity precision in the experiment. Our method proves effective and is applicable for the systems in which real-time OFA generation is essential.

physics.optics↗

arXiv2024

In situ fully vectorial tomography and pupil function retrieval of tightly focused fields

Tightly focused optical fields are essential in nano-optics, but their applications have been limited by the challenges of accurate yet efficient characterization. In this article, we develop an in situ method for reconstructing the fully vectorial information of tightly focused fields in three-dimensional (3D) space, while simultaneously retrieving the pupil functions. Our approach encodes these fields using phase-modulated focusing and polarization-split detection, followed by decoding through an algorithm based on least-sampling matrix-based Fourier transform and analytically derived gradient. We further employ a focus scanning strategy. When combined with our decoding algorithm, this strategy mitigates the imperfections in the detection path. This approach requires only 10 frames of 2D measurements to realize approximate 90% accuracy in tomography and pupil function retrieval within 10s. Thus, it serves as a robust and convenient tool for the precise characterization and optimization of light at the nanoscale. We apply this technique to fully vectorial field manipulation, adaptive-optics-assisted nanoscopy, and addressing mixed-state problems.

physics.optics↗

arXiv2023

Multi-energy X-ray linear-array detector enabled by the side-illuminated metal halide scintillator

Conventional scintillator-based X-ray imaging typically captures the full spectral of X-ray photons without distinguishing their energy. However, the absence of X-ray spectral information often results in insufficient image contrast, particularly for substances possessing similar atomic numbers and densities. In this study, we present an innovative multi-energy X-ray linear-array detector that leverages side-illuminated X-ray scintillation using emerging metal halide Cs3Cu2I5. The negligible self-absorption characteristic not only improves the scintillation output but is also beneficial for improving the energy resolution for the side-illuminated scintillation scenarios. By exploiting Beer's law, which governs the absorption of X-ray photons with different energies, the incident X-ray spectral can be reconstructed by analyzing the distribution of scintillation intensity when the scintillator is illuminated from the side. The relative error between the reconstructed and measured X-ray spectral was less than 5.63 %. Our method offers an additional energy-resolving capability for X-ray linear-array detectors commonly used in computed tomography (CT) imaging setups, surpassing the capabilities of conventional energy-integration approaches, all without requiring extra hardware components. A proof-of-concept multi-energy CT imaging system featuring eight energy channels was successfully implemented. This study presents a simple and efficient strategy for achieving multi-energy X-ray detection and CT imaging based on emerging metal halides.

physics.ins-det↗

arXiv2023

Dichromatic breather molecules in a mode-locked fiber laser

Bound states of solitons (molecules) occur in various settings, playing an important role in the operation of fiber lasers, optical emulations, encoding, and communications. Soliton interactions are generally related to breathing dynamics in nonlinear dissipative systems, maintaining potential applications in spectroscopy. In the present work, dichromatic breather molecules (DBMs) are created in a synchronized mode-locked fiber laser. Real-time delay-shifting interference spectra are measured to display the temporal evolution of the DBMs, that cannot be observed by means of the usual real-time spectroscopy. As a result, robust out-of-phase vibrations are found as a typical intrinsic mode of DBMs. The same bound states are produced numerically in the framework of a model combining equations for the population inversion in the mode-locked laser and XPM-coupled complex Ginzburg-Landau equations for amplitudes of the optical fields in the fiber segments of the laser cavity. The results demonstrate that the Q-switching instability induces the onset of breathing oscillations. The findings offer new possibilities for the design of various regimes of the operation of ultrafast lasers.

physics.optics↗

arXiv2022

Multispectral large-area X-ray imaging enabled by stacked multilayer scintillators

Conventional energy-integration black-white X-ray imaging lacks spectral information of X-ray photons. Although X-ray spectra (energy) can be distinguished by photon-counting technique typically with CdZnTe detectors, it is very challenging to be applied to large-area flat-panel X-ray imaging (FPXI). Herein, we design multi-layer stacked scintillators of different X-ray absorption capabilities and scintillation spectrums, in this scenario, the X-ray energy can be discriminated by detecting the emission spectra of each scintillator, therefore the multispectral X-ray imaging can be easily obtained by color or multispectral visible-light camera in one single shot of X-ray. To verify this idea, stacked multilayer scintillators based on several emerging metal halides were fabricated in the cost-effective and scalable solution process, and proof-of-concept multi-energy FPXI were experimentally demonstrated. The dual-energy X-ray image of a bone-muscle model clearly showed the details that were invisible in conventional energy-integration FPXI. By stacking four layers of specifically designed multilayer scintillators with appropriate thicknesses, a prototype FPXI with four energy channels was realized, proving its extendibility to multispectral or even hyperspectral X-ray imaging. This study provides a facile and effective strategy to realize energy-resolved flat-panel X-ray imaging.

physics.ins-det↗

arXiv2018

3D super-resolved multi-angle TIRF via polarization modulation

Measuring the three dimension nanoscale organization of protein or cellular structures is challenging, especially when the structure is dynamic. Owing to the informative total internal reflection fluorescence (TIRF) imaging under varied illumination angles, multi-angle (MA) TIRF has been examined to offer a nanoscale axial and a sub-second temporal resolution. However, conventional MA-TIRF still performs badly in lateral resolution and fail to characterize the depth-image in densely-distributed regions, leaving a huge contrast between the nanoscale axial resolution and the diffraction limited lateral resolution. Moreover, the previous reconstructions are highly restricted by the efficiency with the increased amount of illumination angles. Here, we for the first time, emphasize the lateral super-resolution in the MA-TIRF and exampled by simply introducing polarization modulation into the illumination procedure. Equipped with a sparsity and accelerated proximal algorithm, we examine a more precise 3D sample structure compared with previous methods, enabling live cell imaging with temporal-resolution of 2 seconds, recovering high-resolution mitochondria fission and fusion process. Since the introduced vortex half wave retarder is an add-on component to the existing MA-TRIF system and the algorithm is the first open sourced and the fastest, we anticipate that the method and algorithm introduced here would be adopted rapidly by the biological community.

physics.optics↗

arXiv2017

Nonlinear focal modulation microscopy

Here we report nonlinear focal modulation microscopy (NFOMM) to achieve super-resolution imaging. Abandoning the previous persistence on minimizing the size of Gaussian emission pattern by directly narrowing (e.g. Minimizing the detection pinhole in Airyscan, Zeiss) or by indirectly peeling its outer profiles (e.g., Depleting the outer emission region in STED, stimulated emission microscopy) in pointwise scanning scenarios, we stick to a more general basis------ maximizing the system frequency shifting ability. In NFOMM, we implement a nonlinear focal modulation by applying phase modulations with high-intensity illumination, thereby extending the effective spatial-frequency bandwidth of the imaging system for reconstructing super-resolved images. NFOMM employs a spatial light modulator (SLM) for assisting pattern-modulated pointwise scanning, making the system single beam path while achieving a transverse resolution of 60 nm on imaging fluorescent nanoparticles. While exploring a relatively simple and flexible system, the imagingperformance of NFOMM is comparable with STED as evidenced in imaging nuclear pore complexes, demonstrating NFOMM is a suitable observation tool for fundamental studies in biology. Since NFOMM is implemented as an add-on module to an existing laser scanning microscope and easy to be aligned, we anticipate it will be adopted rapidly by the biological community.

physics.optics↗

arXiv2017

Saturated absorption competition microscopy

We introduce the concept of saturated absorption competition (SAC) microscopy as a means of providing sub-diffraction spatial resolution in fluorescence imaging. Unlike the post-competition process between stimulated and spontaneous emission that is used in stimulated emission depletion (STED) microscopy, SAC microscopy breaks the diffraction limit by emphasizing a pre-competition process that occurs in the fluorescence absorption stage in a manner that shares similarities with ground-state depletion (GSD) microscopy. Moreover, unlike both STED and GSD microscopy, SAC microscopy offers a reduction in complexity and cost by utilizing only a single continuous-wave laser diode and an illumination intensity that is ~ 20x smaller than that used in STED. Our approach can be physically implemented in a confocal microscope by dividing the input laser source into a time-modulated primary excitation beam and a doughnut-shaped saturation beam, and subsequently employing a homodyne detection scheme to select the modulated fluorescence signal. Herein, we provide both a physico-chemical model of SAC and experimentally demonstrate by way of a proof-of-concept experiment a transverse spatial resolution of ~lambda/6.

physics.optics↗