arXiv subjects

Cuntai Guan

Publications and source records attributed to Cuntai Guan.

69 records · Page 4Linked to original sources

arXiv2022

MT-UDA: Towards Unsupervised Cross-modality Medical Image Segmentation with Limited Source Labels

The success of deep convolutional neural networks (DCNNs) benefits from high volumes of annotated data. However, annotating medical images is laborious, expensive, and requires human expertise, which induces the label scarcity problem. Especially when encountering the domain shift, the problem becomes more serious. Although deep unsupervised domain adaptation (UDA) can leverage well-established source domain annotations and abundant target domain data to facilitate cross-modality image segmentation and also mitigate the label paucity problem on the target domain, the conventional UDA methods suffer from severe performance degradation when source domain annotations are scarce. In this paper, we explore a challenging UDA setting - limited source domain annotations. We aim to investigate how to efficiently leverage unlabeled data from the source and target domains with limited source annotations for cross-modality image segmentation. To achieve this, we propose a new label-efficient UDA framework, termed MT-UDA, in which the student model trained with limited source labels learns from unlabeled data of both domains by two teacher models respectively in a semi-supervised manner. More specifically, the student model not only distills the intra-domain semantic knowledge by encouraging prediction consistency but also exploits the inter-domain anatomical information by enforcing structural consistency. Consequently, the student model can effectively integrate the underlying knowledge beneath available data resources to mitigate the impact of source label scarcity and yield improved cross-modality segmentation performance. We evaluate our method on MM-WHS 2017 dataset and demonstrate that our approach outperforms the state-of-the-art methods by a large margin under the source-label scarcity scenario.

eess.IV↗

arXiv2022

MIN2Net: End-to-End Multi-Task Learning for Subject-Independent Motor Imagery EEG Classification

Advances in the motor imagery (MI)-based brain-computer interfaces (BCIs) allow control of several applications by decoding neurophysiological phenomena, which are usually recorded by electroencephalography (EEG) using a non-invasive technique. Despite great advances in MI-based BCI, EEG rhythms are specific to a subject and various changes over time. These issues point to significant challenges to enhance the classification performance, especially in a subject-independent manner. To overcome these challenges, we propose MIN2Net, a novel end-to-end multi-task learning to tackle this task. We integrate deep metric learning into a multi-task autoencoder to learn a compact and discriminative latent representation from EEG and perform classification simultaneously. This approach reduces the complexity in pre-processing, results in significant performance improvement on EEG classification. Experimental results in a subject-independent manner show that MIN2Net outperforms the state-of-the-art techniques, achieving an F1-score improvement of 6.72%, and 2.23% on the SMR-BCI, and OpenBMI datasets, respectively. We demonstrate that MIN2Net improves discriminative information in the latent representation. This study indicates the possibility and practicality of using this model to develop MI-based BCI applications for new users without the need for calibration.

eess.SP↗

arXiv2021

Continuous Emotion Recognition with Audio-visual Leader-follower Attentive Fusion

We propose an audio-visual spatial-temporal deep neural network with: (1) a visual block containing a pretrained 2D-CNN followed by a temporal convolutional network (TCN); (2) an aural block containing several parallel TCNs; and (3) a leader-follower attentive fusion block combining the audio-visual information. The TCN with large history coverage enables our model to exploit spatial-temporal information within a much larger window length (i.e., 300) than that from the baseline and state-of-the-art methods (i.e., 36 or 48). The fusion block emphasizes the visual modality while exploits the noisy aural modality using the inter-modality attention mechanism. To make full use of the data and alleviate over-fitting, cross-validation is carried out on the training and validation set. The concordance correlation coefficient (CCC) centering is used to merge the results from each fold. On the test (validation) set of the Aff-Wild2 database, the achieved CCC is 0.463 (0.469) for valence and 0.492 (0.649) for arousal, which significantly outperforms the baseline method with the corresponding CCC of 0.200 (0.210) and 0.190 (0.230) for valence and arousal, respectively. The code is available at https://github.com/sucv/ABAW2.

cs.CV↗

arXiv2021

Hierarchical Consistency Regularized Mean Teacher for Semi-supervised 3D Left Atrium Segmentation

Deep learning has achieved promising segmentation performance on 3D left atrium MR images. However, annotations for segmentation tasks are expensive, costly and difficult to obtain. In this paper, we introduce a novel hierarchical consistency regularized mean teacher framework for 3D left atrium segmentation. In each iteration, the student model is optimized by multi-scale deep supervision and hierarchical consistency regularization, concurrently. Extensive experiments have shown that our method achieves competitive performance as compared with full annotation, outperforming other state-of-the-art semi-supervised segmentation methods.

cs.CV↗

arXiv2021

Time-Series Representation Learning via Temporal and Contextual Contrasting

Learning decent representations from unlabeled time-series data with temporal dynamics is a very challenging task. In this paper, we propose an unsupervised Time-Series representation learning framework via Temporal and Contextual Contrasting (TS-TCC), to learn time-series representation from unlabeled data. First, the raw time-series data are transformed into two different yet correlated views by using weak and strong augmentations. Second, we propose a novel temporal contrasting module to learn robust temporal representations by designing a tough cross-view prediction task. Last, to further learn discriminative representations, we propose a contextual contrasting module built upon the contexts from the temporal contrasting module. It attempts to maximize the similarity among different contexts of the same sample while minimizing similarity among contexts of different samples. Experiments have been carried out on three real-world time-series datasets. The results manifest that training a linear classifier on top of the features learned by our proposed TS-TCC performs comparably with the supervised training. Additionally, our proposed TS-TCC shows high efficiency in few-labeled data and transfer learning scenarios. The code is publicly available at https://github.com/emadeldeen24/TS-TCC.

cs.LG↗

arXiv2021

FBCNet: A Multi-view Convolutional Neural Network for Brain-Computer Interface

Lack of adequate training samples and noisy high-dimensional features are key challenges faced by Motor Imagery (MI) decoding algorithms for electroencephalogram (EEG) based Brain-Computer Interface (BCI). To address these challenges, inspired from neuro-physiological signatures of MI, this paper proposes a novel Filter-Bank Convolutional Network (FBCNet) for MI classification. FBCNet employs a multi-view data representation followed by spatial filtering to extract spectro-spatially discriminative features. This multistage approach enables efficient training of the network even when limited training data is available. More significantly, in FBCNet, we propose a novel Variance layer that effectively aggregates the EEG time-domain information. With this design, we compare FBCNet with state-of-the-art (SOTA) BCI algorithm on four MI datasets: The BCI competition IV dataset 2a (BCIC-IV-2a), the OpenBMI dataset, and two large datasets from chronic stroke patients. The results show that, by achieving 76.20% 4-class classification accuracy, FBCNet sets a new SOTA for BCIC-IV-2a dataset. On the other three datasets, FBCNet yields up to 8% higher binary classification accuracies. Additionally, using explainable AI techniques we present one of the first reports about the differences in discriminative EEG features between healthy subjects and stroke patients. Also, the FBCNet source code is available at https://github.com/ravikiran-mane/FBCNet.

cs.OH↗

arXiv2021

Federated Transfer Learning for EEG Signal Classification

The success of deep learning (DL) methods in the Brain-Computer Interfaces (BCI) field for classification of electroencephalographic (EEG) recordings has been restricted by the lack of large datasets. Privacy concerns associated with EEG signals limit the possibility of constructing a large EEG-BCI dataset by the conglomeration of multiple small ones for jointly training machine learning models. Hence, in this paper, we propose a novel privacy-preserving DL architecture named federated transfer learning (FTL) for EEG classification that is based on the federated learning framework. Working with the single-trial covariance matrix, the proposed architecture extracts common discriminative information from multi-subject EEG data with the help of domain adaptation techniques. We evaluate the performance of the proposed architecture on the PhysioNet dataset for 2-class motor imagery classification. While avoiding the actual data sharing, our FTL approach achieves 2% higher classification accuracy in a subject-adaptive analysis. Also, in the absence of multi-subject data, our architecture provides 6% better accuracy compared to other state-of-the-art DL architectures.

cs.LG↗

arXiv2021

DSAL: Deeply Supervised Active Learning from Strong and Weak Labelers for Biomedical Image Segmentation

Image segmentation is one of the most essential biomedical image processing problems for different imaging modalities, including microscopy and X-ray in the Internet-of-Medical-Things (IoMT) domain. However, annotating biomedical images is knowledge-driven, time-consuming, and labor-intensive, making it difficult to obtain abundant labels with limited costs. Active learning strategies come into ease the burden of human annotation, which queries only a subset of training data for annotation. Despite receiving attention, most of active learning methods generally still require huge computational costs and utilize unlabeled data inefficiently. They also tend to ignore the intermediate knowledge within networks. In this work, we propose a deep active semi-supervised learning framework, DSAL, combining active learning and semi-supervised learning strategies. In DSAL, a new criterion based on deep supervision mechanism is proposed to select informative samples with high uncertainties and low uncertainties for strong labelers and weak labelers respectively. The internal criterion leverages the disagreement of intermediate features within the deep learning network for active sample selection, which subsequently reduces the computational costs. We use the proposed criteria to select samples for strong and weak labelers to produce oracle labels and pseudo labels simultaneously at each active learning iteration in an ensemble learning manner, which can be examined with IoMT Platform. Extensive experiments on multiple medical image datasets demonstrate the superiority of the proposed method over state-of-the-art active learning methods.

cs.CV↗

arXiv2020

A Survey on Explainable Artificial Intelligence (XAI): Towards Medical XAI

Recently, artificial intelligence and machine learning in general have demonstrated remarkable performances in many tasks, from image processing to natural language processing, especially with the advent of deep learning. Along with research progress, they have encroached upon many different fields and disciplines. Some of them require high level of accountability and thus transparency, for example the medical sector. Explanations for machine decisions and predictions are thus needed to justify their reliability. This requires greater interpretability, which often means we need to understand the mechanism underlying the algorithms. Unfortunately, the blackbox nature of the deep learning is still unresolved, and many machine decisions are still poorly understood. We provide a review on interpretabilities suggested by different research works and categorize them. The different categories show different dimensions in interpretability research, from approaches that provide "obviously" interpretable information to the studies of complex patterns. By applying the same categorization to interpretability in medical research, it is hoped that (1) clinicians and practitioners can subsequently approach these methods with caution, (2) insights into interpretability will be born with more considerations for medical practices, and (3) initiatives to push forward data-based, mathematically- and technically-grounded medical education are encouraged.

cs.LG↗

arXiv2020

Towards a Fast Steady-State Visual Evoked Potentials (SSVEP) Brain-Computer Interface (BCI)

Steady-state visual evoked potentials (SSVEP) brain-computer interface (BCI) provides reliable responses leading to high accuracy and information throughput. But achieving high accuracy typically requires a relatively long time window of one second or more. Various methods were proposed to improve sub-second response accuracy through subject-specific training and calibration. Substantial performance improvements were achieved with tedious calibration and subject-specific training; resulting in the user's discomfort. So, we propose a training-free method by combining spatial-filtering and temporal alignment (CSTA) to recognize SSVEP responses in sub-second response time. CSTA exploits linear correlation and non-linear similarity between steady-state responses and stimulus templates with complementary fusion to achieve desirable performance improvements. We evaluated the performance of CSTA in terms of accuracy and Information Transfer Rate (ITR) in comparison with both training-based and training-free methods using two SSVEP data-sets. We observed that CSTA achieves the maximum mean accuracy of 97.43$\pm$2.26 % and 85.71$\pm$13.41 % with four-class and forty-class SSVEP data-sets respectively in sub-second response time in offline analysis. CSTA yields significantly higher mean performance (p<0.001) than the training-free method on both data-sets. Compared with training-based methods, CSTA shows 29.33$\pm$19.65 % higher mean accuracy with statistically significant differences in time window less than 0.5 s. In longer time windows, CSTA exhibits either better or comparable performance though not statistically significantly better than training-based methods. We show that the proposed method brings advantages of subject-independent SSVEP classification without requiring training while enabling high target recognition performance in sub-second response time.

cs.LG↗

arXiv2020

TSception: A Deep Learning Framework for Emotion Detection Using EEG

In this paper, we propose a deep learning framework, TSception, for emotion detection from electroencephalogram (EEG). TSception consists of temporal and spatial convolutional layers, which learn discriminative representations in the time and channel domains simultaneously. The temporal learner consists of multi-scale 1D convolutional kernels whose lengths are related to the sampling rate of the EEG signal, which learns multiple temporal and frequency representations. The spatial learner takes advantage of the asymmetry property of emotion responses at the frontal brain area to learn the discriminative representations from the left and right hemispheres of the brain. In our study, a system is designed to study the emotional arousal in an immersive virtual reality (VR) environment. EEG data were collected from 18 healthy subjects using this system to evaluate the performance of the proposed deep learning network for the classification of low and high emotional arousal states. The proposed method is compared with SVM, EEGNet, and LSTM. TSception achieves a high classification accuracy of 86.03%, which outperforms the prior methods significantly (p<0.05). The code is available at https://github.com/deepBrains/TSception

eess.SP↗

arXiv2020

Brain MRI-based 3D Convolutional Neural Networks for Classification of Schizophrenia and Controls

Convolutional Neural Network (CNN) has been successfully applied on classification of both natural images and medical images but not yet been applied to differentiating patients with schizophrenia from healthy controls. Given the subtle, mixed, and sparsely distributed brain atrophy patterns of schizophrenia, the capability of automatic feature learning makes CNN a powerful tool for classifying schizophrenia from controls as it removes the subjectivity in selecting relevant spatial features. To examine the feasibility of applying CNN to classification of schizophrenia and controls based on structural Magnetic Resonance Imaging (MRI), we built 3D CNN models with different architectures and compared their performance with a handcrafted feature-based machine learning approach. Support vector machine (SVM) was used as classifier and Voxel-based Morphometry (VBM) was used as feature for handcrafted feature-based machine learning. 3D CNN models with sequential architecture, inception module and residual module were trained from scratch. CNN models achieved higher cross-validation accuracy than handcrafted feature-based machine learning. Moreover, testing on an independent dataset, 3D CNN models greatly outperformed handcrafted feature-based machine learning. This study underscored the potential of CNN for identifying patients with schizophrenia using 3D brain MR images and paved the way for imaging-based individual-level diagnosis and prognosis in psychiatric disorders.

cs.CV↗

arXiv2020

Enhancing the Extraction of Interpretable Information for Ischemic Stroke Imaging from Deep Neural Networks

We implement a visual interpretability method Layer-wise Relevance Propagation (LRP) on top of 3D U-Net trained to perform lesion segmentation on the small dataset of multi-modal images provided by ISLES 2017 competition. We demonstrate that LRP modifications could provide more sensible visual explanations to an otherwise highly noise-skewed saliency map. We also link amplitude of modified signals to useful information content. High amplitude localized signals appear to constitute the noise that undermines the interpretability capacity of LRP. Furthermore, mathematical framework for possible analysis of function approximation is developed by analogy.

eess.IV↗

arXiv2019

Machine learning driven synthesis of few-layered WTe2

Reducing the lateral scale of two-dimensional (2D) materials to one-dimensional (1D) has attracted substantial research interest not only to achieve competitive electronic device applications but also for the exploration of fundamental physical properties. Controllable synthesis of high-quality 1D nanoribbons (NRs) is thus highly desirable and essential for the further study. Traditional exploration of the optimal synthesis conditions of novel materials is based on the trial-and-error approach, which is time consuming, costly and laborious. Recently, machine learning (ML) has demonstrated promising capability in guiding material synthesis through effectively learning from the past data and then making recommendations. Here, we report the implementation of supervised ML for the chemical vapor deposition (CVD) synthesis of high-quality 1D few-layered WTe2 nanoribbons (NRs). The synthesis parameters of the WTe2 NRs are optimized by the trained ML model. On top of that, the growth mechanism of as-synthesized 1T' few-layered WTe2 NRs is further proposed, which may inspire the growth strategies for other 1D nanostructures. Our findings suggest that ML is a powerful and efficient approach to aid the synthesis of 1D nanostructures, opening up new opportunities for intelligent material development.

cond-mat.mtrl-sci↗

arXiv2019

Machine learning-guided synthesis of advanced inorganic materials

Synthesis of advanced inorganic materials with minimum number of trials is of paramount importance towards the acceleration of inorganic materials development. The enormous complexity involved in existing multi-variable synthesis methods leads to high uncertainty, numerous trials and exorbitant cost. Recently, machine learning (ML) has demonstrated tremendous potential for material research. Here, we report the application of ML to optimize and accelerate material synthesis process in two representative multi-variable systems. A classification ML model on chemical vapor deposition-grown MoS2 is established, capable of optimizing the synthesis conditions to achieve higher success rate. While a regression model is constructed on the hydrothermal-synthesized carbon quantum dots, to enhance the process-related properties such as the photoluminescence quantum yield. Progressive adaptive model is further developed, aiming to involve ML at the beginning stage of new material synthesis. Optimization of the experimental outcome with minimized number of trials can be achieved with the effective feedback loops. This work serves as proof of concept revealing the feasibility and remarkable capability of ML to facilitate the synthesis of inorganic materials, and opens up a new window for accelerating material development.

cond-mat.mtrl-sci↗