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Cyril Milleret

Publications and source records attributed to Cyril Milleret.

3 recordsLinked to original sources

Bayesian decision theory for wildlife management under uncertainty: from inference to action

Ecologists are increasingly expected to inform management decisions under uncertainty, yet most analytical workflows stop at statistical inference. Bayesian decision theory provides a coherent framework to bridge this gap by propagating posterior uncertainty to evaluate alternative actions through utility functions, but remains underused in ecology. Here, we present a practical workflow for implementing Bayesian decision theory using standard Bayesian tools, illustrated with two case studies: wolf management in France, where the decision is the number of wolves to remove under uncertain population dynamics, and invasive muskrat management in the Netherlands, where control effort is allocated across space. In both cases, expected utility integrates posterior uncertainty and management trade-offs. Optimal decisions emerge as compromises between competing objectives. For wolves, optimal harvest balances removal benefits and population risk. For muskrats, optimal effort increases with the importance of population reduction and is unevenly allocated across provinces. Bayesian decision theory provides a formal interface between scientists, who characterize ecological systems and uncertainty, and decision-makers, who define objectives, values and trade-offs. By making these trade-offs explicit, it enhances transparency and relevance for management. It also provides a common framework for bringing together Bayesian statistics, decision analysis and risk analysis, strengthening the link between ecological inference and action.

stat.AP

Estimating wolf population size in France using non-invasive genetic sampling and spatial capture recapture models

Population size is a key metric for management and conservation. This is especially true for large carnivore populations for which management decisions are often based on population size estimates. In France, gray wolves (Canis lupus) have been monitored for more than two decades using non-invasive genetic sampling and capture-recapture models. Population size estimates directly inform the annual number of wolves that can be killed legally. It is therefore key to use appropriate methods to obtain robust population size estimates. To track the recent numerical and geographical expansion of the population, a substantial increase in sample collection was performed during the winter 2023/24 within the entire wolf distribution range in France. A total of 1964 samples were genotyped and assigned to 576 different individuals using microsatellites genetic markers. During the winter 2023/24, spatial capture-recapture models estimated the wolf population size in France to be likely between 920 and 1125 individuals (95% credible interval). Detection probability varied spatially and was positively influenced by snow cover and accessibility. Wolf density was strongly associated with the recent presence of the species, reflecting the ongoing recolonization process from the Alps. This work illustrates the usefulness of non-invasive genetic data and spatial capture-recapture for large-scale population assessment. It also lays the ground for future improvements in monitoring to fully exploit the potential of spatial capture-recapture models.

q-bio.PE

Modelling spatially autocorrelated detection probabilities in spatial capture-recapture using random effects

Spatial capture-recapture (SCR) models are now widely used for estimating density from repeated individual spatial encounters. SCR accounts for the inherent spatial autocorrelation in individual detections by modelling detection probabilities as a function of distance between the detectors and individual activity centres. However, additional spatial heterogeneity in detection probability may still creep in due to environmental or sampling characteristics. if unaccounted for, such variation can lead to pronounced bias in population size estimates. Using simulations, we describe and test three Bayesian SCR models that use generalized linear mixed models (GLMM) to account for latent heterogeneity in baseline detection probability across detectors using: independent random effects (RE), spatially autocorrelated random effects (SARE), and a two-group finite mixture model (FM). Overall, SARE provided the least biased population size estimates (median RB: -9 -- 6%). When spatial autocorrelation was high, SARE also performed best at predicting the spatial pattern of heterogeneity in detection probability. At intermediate levels of autocorrelation, spatially-explicit estimates of detection probability obtained with FM where more accurate than those generated by SARE and RE. In cases where the number of detections per detector is realistically low (at most 1), all GLMMs considered here may require dimension reduction of the random effects by pooling baseline detection probability parameters across neighboring detectors ("aggregation") to avoid over-parameterization. The added complexity and computational overhead associated with SCR-GLMMs may only be justified in extreme cases of spatial heterogeneity. However, even in less extreme cases, detecting and estimating spatially heterogeneous detection probability may assist in planning or adjusting monitoring schemes.

stat.AP