arXiv subjects

Débora Princepe

Publications and source records attributed to Débora Princepe.

4 recordsLinked to original sources

arXiv2024

Nuclear compensatory evolution driven by mito-nuclear incompatibilities

Mitochondrial function relies on the coordinated expression of mitochondrial and nuclear genes, exhibiting remarkable resilience regardless the susceptibility of mitochondrial DNA (mtDNA) to accumulate harmful mutations. A suggested mechanism for preserving this mito-nuclear compatibility is the nuclear compensation, where deleterious mitochondrial alleles drive compensatory changes in nuclear genes. However, prevalence and conditioning factors for this phenomenon remain debated, with empirical evidence supporting and refuting its existence. Here, we investigate how mito-nuclear incompatibilities impact nuclear and mitochondrial substitutions in a model for species radiation under selection for mito-nuclear compatibility, similar to the process of mtDNA introgression. Mating eligibility relies on genetic (nuclear DNA) and spatial proximity, with populations evolving from partially compatible mito-nuclear states. Mutations do not confer advantages nor disadvantages, with no optimal nuclear or mitochondrial types, but individual fitness decreases with increasing incompatibilities, driving the demand for mito-nuclear genetic coordination. We find that selection consistently promotes compensation on incompatible nuclear genes, resulting in more substitutions than compatible or non-interacting genes. Surprisingly, low mitochondrial mutation rates favor compensation, as do increased selective pressure or a higher number of mismatches. High mitochondrial mutation rates boost substitutions in initially compatible nuclear genes, relaxing the selection against mito-nuclear incompatibilities and mirroring the compensatory evolution. Moreover, the presence of incompatibilities accelerates species radiation, but richness at equilibrium is not directly correlated with substitutions' response, revealing the complex dynamics triggered by mitochondrial introgression and mito-nuclear co-evolution.

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arXiv2023

Intermittent migration can induce pulses of speciation in a two-island system

Geographic barriers prevent migration between populations, thereby facilitating speciation through allopatry. However, these barriers can exhibit dynamic behavior in nature, promoting cycles of expansion and contraction of populations. Such oscillations cause temporal variations in migration that do not necessarily prevent speciation; on the contrary, they have been suggested as a driving force for diversification. Here we present a study on a two-island neutral speciation model in scenarios with intermittent migration driven by sea-level fluctuations. Mating is constrained to genetically compatible individuals inhabiting the same island, and offspring inherit nuclear genomes from both parents with recombination. We observe pulses of speciation that would not occur in strict isolation or continuous migration. According to the seabed height, which modulates the duration of the isolation and connection periods, the maximum richness occurs at different times and in an ephemeral fashion. The expansion-contraction dynamics can accelerate diversification, but a long time in isolation can reduce the richness to one species per island, resembling patterns described by the taxon pulse hypothesis of diversification. Together with other studies, our results support the relevance of research on the impact of variable migration on diversification, suggested to be related to regions of high diversity.

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arXiv2022

Mito-nuclear selection induces a trade-off between species ecological dominance and evolutionary lifespan

Mitochondrial and nuclear genomes must be co-adapted to ensure proper cellular respiration and energy production. Mito-nuclear incompatibility reduces individual fitness and induces hybrid infertility, suggesting a possible role in reproductive barriers and speciation. Here we develop a birth-death model for evolution in spatially extended populations under selection for mito-nuclear co-adaptation. Mating is constrained by physical and genetic proximity, and offspring inherit nuclear genomes from both parents, with recombination. The model predicts macroscopic patterns including a community's long-term species diversity, its species abundance distribution, speciation and extinction rates, as well as intra- and inter-specific genetic variation. We explore how these long-term outcomes depend upon the microscopic parameters of reproduction: individual fitness governed by mito-nuclear compatibility, constraints on mating compatibility, and ecological carrying capacity. We find that strong selection for mito-nuclear compatibility reduces the equilibrium number of species after a radiation, increases the species' abundances, while simultaneously increasing both speciation and extinction rates. The negative correlation between species diversity and diversification rates in our model agrees with the broad empirical pattern of lower species diversity and higher speciation/extinction rates in temperate regions, compared to the tropics. We therefore suggest that these empirical patterns may be caused in part by latitudinal variation in metabolic demands, and corresponding variation in selection on mito-nuclear function.

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arXiv2022

Diversity patterns and speciation processes in a two-island system with continuous migration

Geographic isolation is a central mechanism of speciation, but perfect isolation of populations is rare. Although speciation can be hindered if gene flow is large, intermediate levels of migration can enhance speciation by introducing genetic novelty in the semi-isolated populations or founding small communities of migrants. Here we consider a two island neutral model of speciation with continuous migration and study diversity patterns as a function of the migration probability, population size, and number of genes involved in reproductive isolation (dubbed as genome size). For small genomes, low levels of migration induce speciation on the islands that otherwise would not occur. Diversity, however, drops sharply to a single species inhabiting both islands as the migration probability increases. For large genomes, sympatric speciation occurs even when the islands are strictly isolated. Then species richness per island increases with the probability of migration, but the total number of species decreases as they become cosmopolitan. For each genome size, there is an optimal migration intensity for each population size that maximizes the number of species. We discuss the observed modes of speciation induced by migration and how they increase species richness in the insular system while promoting asymmetry between the islands and hindering endemism.

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