arXiv subjects

Da-Ren He

Publications and source records attributed to Da-Ren He.

13 recordsLinked to original sources

arXiv2011

An Evolution Model of Complex Systems with Simultaneous Cooperation and Competition

Systems with simultaneous cooperation and competition among the elements are ubiquitous. In spite of their practical importance, knowledge on the evolution mechanism of this class of complex system is still very limit. In this work, by conducting extensive empirical survey to a large number of cooperation-competition systems which cover wide categories and contain the information of network topology, cooperation-competition gain, and the evolution time, we try to get some insights to the universal mechanism of their evolutions. Empirical investigations show that the distributions of the cooperation-competition gain interpolates between power law function and exponential function. Particularly, we found that the cooperation-competition systems with longer evolution durations tend to have more heterogeneous distributions of the cooperation-competition gain. Such an empirical observation can be well explained by an analytic model in which the evolution of the systems are mainly controlled by the Matthew effect, and the marginal heterogeneity of the initial distribution is amplified by the Matthew effect with similar speed in spite of the diversity of the investigated systems.

physics.soc-ph↗

arXiv2011

Interconnecting bilayer networks

A typical complex system should be described by a supernetwork or a network of networks, in which the networks are coupled to some other networks. As the first step to understanding the complex systems on such more systematic level, scientists studied interdependent multilayer networks. In this letter, we introduce a new kind of interdependent multilayer networks, i.e., interconnecting networks, for which the component networks are coupled each other by sharing some common nodes. Based on the empirical investigations, we revealed a common feature of such interconnecting networks, namely, the networks with smaller averaged topological differences of the interconnecting nodes tend to share more nodes. A very simple node sharing mechanism is proposed to analytically explain the observed feature of the interconnecting networks.

physics.soc-ph↗

arXiv2010

Empirical study on some interconnecting bilayer networks

This manuscript serves as an online supplement of a preprint, which presents a study on a kind of bilayer networks where some nodes (called interconnecting nodes) in two layers merge. A model showing an important general property of the bilayer networks is proposed. Then the analytic discussion of the model is compared with empirical conclusions. We present all the empirical observations in this online supplement.

physics.soc-ph↗

arXiv2010

Study on some interconnecting bilayer networks

We present a model, in which some nodes (called interconnecting nodes) in two networks merge and play the roles in both the networks. The model analytic and simulation discussions show a monotonically increasing dependence of interconnecting node topological position difference and a monotonically decreasing dependence of the interconnecting node number on function difference of both networks. The dependence function details do not influence the qualitative relationship. This online manuscript presents the details of the model simulation and analytic discussion, as well as the empirical investigations performed in eight real world bilayer networks. The analytic and simulation results with different dependence function forms show rather good agreement with the empirical conclusions.

physics.soc-ph↗

arXiv2010

Competition ability dependence on uniqueness in some collaboration-competition bipartite networks

Recently, our group quantitatively defined two quantities, "competition ability" and "uniqueness" (Chin. Phys. Lett. 26 (2009) 058901) for a kind of cooperation-competition bipartite networks, where "producers" produce some "products" and "output" them to a "market" to make competition. Factories, universities or restaurants can serve as the examples. In the letter we presented an analytical conclusion that the competition ability was linearly dependent on the uniqueness in the trivial cases, where both the "input quality" and "competition gain" obey normal distributions. The competition between Chinese regional universities was taken as examples. In this article we discuss the abnormal cases where competition gains show the distributions near to power laws. In addition, we extend the study onto all the cooperation-competition bipartite networks and therefore redefine the competition ability. The empirical investigation of the competition ability dependence on the uniqueness in 15 real world collaboration-competition systems is presented, 14 of which belong to the general nontrivial cases. We find that the dependence generally follows the so-called "shifted power law (SPL)", but very near to power laws. The empirically obtained heterogeneity indexes of the distributions of competition ability and uniqueness are also presented. These empirical investigations will be used as a supplementary of a future paper, which will present the comparison and further discussions about the competition ability dependence on the uniqueness in the abnormal collaboration-competition systems and the relationship between the dependence and the competition ability and uniqueness heterogeneity.

physics.soc-ph↗

arXiv2009

Some collaboration-competition bipartite networks

Recently, we introduced a quantity, "node weight", to describe the collaboration sharing or competition gain of the elements in the collaboration-competition networks, which can be well described by bipartite graphs. We find that the node weight distributions of all the networks follow the so-called "shifted power law (SPL)". The common distribution function may indicate that the evolution of the collaboration and competition in very different systems obeys a general rule. In order to set up a base of the further investigations on the universal system evolution dynamics, we now present the definition of the networks and their node weights, the node weight distributions, as well as the evolution durations of 15 real world collaboration-competition systems which are belonging to diverse fields.

physics.soc-ph↗

arXiv2008

Scaling of critical connectivity of mobile ad hoc communication networks

In this paper, critical global connectivity of mobile ad hoc communication networks (MAHCN) is investigated. We model the two-dimensional plane on which nodes move randomly with a triangular lattice. Demanding the best communication of the network, we account the global connectivity $η$ as a function of occupancy $σ$ of sites in the lattice by mobile nodes. Critical phenomena of the connectivity for different transmission ranges $r$ are revealed by numerical simulations, and these results fit well to the analysis based on the assumption of homogeneous mixing . Scaling behavior of the connectivity is found as $η\sim f(R^βσ)$, where $R=(r-r_{0})/r_{0}$, $r_{0}$ is the length unit of the triangular lattice and $β$ is the scaling index in the universal function $f(x)$. The model serves as a sort of site percolation on dynamic complex networks relative to geometric distance. Moreover, near each critical $σ_c(r)$ corresponding to certain transmission range $r$, there exists a cut-off degree $k_c$ below which the clustering coefficient of such self-organized networks keeps a constant while the averaged nearest neighbor degree exhibits a unique linear variation with the degree k, which may be useful to the designation of real MAHCN.

cs.NI↗

arXiv2007

An Empirical Study of Immune System Based On Bipartite Network

Immune system is the most important defense system to resist human pathogens. In this paper we present an immune model with bipartite graphs theory. We collect data through COPE database and construct an immune cell- mediators network. The act degree distribution of this network is proved to be power-law, with index of 1.8. From our analysis, we found that some mediators with high degree are very important mediators in the process of regulating immune activity, such as TNF-alpha, IL-8, TNF-alpha receptors, CCL5, IL-6, IL-2 receptors, TNF-beta receptors, TNF-beta, IL-4 receptors, IL-1 beta, CD54 and so on. These mediators are important in immune system to regulate their activity. We also found that the assortative of the immune system is -0.27. It reveals that our immune system is non-social network. Finally we found similarity of the network is 0.13. Each two cells are similar to small extent. It reveals that many cells have its unique features. The results show that this model could describe the immune system comprehensive.

nlin.AO↗

arXiv2007

A Collaboration Network Model Of Cytokine-Protein Network

Complex networks provide us a new view for investigation of immune systems. In this paper we collect data through STRING database and present a model with cooperation network theory. The cytokine-protein network model we consider is constituted by two kinds of nodes, one is immune cytokine types which can act as acts, other one is protein type which can act as actors. From act degree distribution that can be well described by typical SPL -shifted power law functions, we find that HRAS.TNFRSF13C.S100A8.S100A1.MAPK8.S100A7.LIF.CCL4.CXCL13 are highly collaborated with other proteins. It reveals that these mediators are important in cytokine-protein network to regulate immune activity. Dyad act degree distribution is another important property to generalized collaboration network. Dyad is two proteins and they appear in one cytokine collaboration relationship. The dyad act degree distribution can be well described by typical SPL functions. The length of the average shortest path is 1.29. These results show that this model could describe the cytokine-protein collaboration preferably

nlin.AO↗

arXiv2007

A Brand-new Research Method of Neuroendocrine System

In this paper, we present the empirical investigation results on the neuroendocrine system by bipartite graphs. This neuroendocrine network model can describe the structural characteristic of neuroendocrine system. The act degree distribution and cumulate act degree distribution show so-called shifted power law-SPL function forms. In neuroendocrine network, the act degree stands for the number of the cells that secretes a single mediator, in which bFGF(basic fibroblast growth factor) is the largest node act degree. It is an important mitogenic cytokine, followed by TGF-beta, IL-6, IL1-beta, VEGF, IGF-1and so on. They are critical in neuroendocrine system to maintain bodily healthiness, emotional stabilization and endocrine harmony. The average act degree of neuroendocrine network is h = 3.01, It means each mediator is secreted by three cells on an average . The similarity that stand for the average probability of secreting the same mediators by all the neuroendocrine cells is s = 0.14. Our results may be used in the research of the medical treatment of neuroendocrine diseases.

nlin.AO↗

arXiv2007

The process of coevolutionary competitive exclusion: speciation, multifractality and power-laws in correlation

Competitive exclusion, a key principle of ecology, can be generalized to understand many other complex systems. Individuals under surviving pressure tend to be different from others, and correlations among them change correspondingly to the updating of their states. We show with numerical simulation that these aptitudes can contribute to group formation or speciation in social fields. Moreover, they can lead to power-law topological correlations of complex networks. By coupling updating states of nodes with variation of connections in a network, structural properties with power-laws and functions like multifractality, spontaneous ranking and evolutionary branching of node states can emerge out simultaneously from the present self-organized model of coevolutionary process.

physics.data-an↗

arXiv2005

A general model for collaboration networks

In this paper, we propose a general model for collaboration networks. Depending on a single free parameter "{\bf preferential exponent}", this model interpolates between networks with a scale-free and an exponential degree distribution. The degree distribution in the present networks can be roughly classified into four patterns, all of which are observed in empirical data. And this model exhibits small-world effect, which means the corresponding networks are of very short average distance and highly large clustering coefficient. More interesting, we find a peak distribution of act-size from empirical data which has not been emphasized before of some collaboration networks. Our model can produce the peak act-size distribution naturally that agrees with the empirical data well.

cond-mat.stat-mech↗

arXiv1999

A New Feature in Some Quasi-discontinuous Systems

Many systems can display a very short, rapid changing stage (quasi-discontinuous region) inside a relatively very long and slowly changing process. A quantitative definition for the "quasi-discontinuity" in these systems has been introduced. We have shown by a simplified model that extra-large Feigenbaum constants can be found inside some period-doubling cascades due to the quasi-discontinuity. As an example, this phenomenon has also been observed in Rose-Hindmash model describing neuron activities.

chao-dyn↗