arXiv subjects

Daben Liu

Publications and source records attributed to Daben Liu.

At least 19 recordsLinked to original sources

arXiv2026

CAGE: Coherence-Aware Graph Encoding for Retrieval-Augmented Generation

Traditional Retrieval-Augmented Generation (RAG) systems score each passage independently against the query, assembling context sets that may be individually relevant yet collectively incoherent. We introduce Coherence-Aware Graph Encoding (CAGE), a reranking framework that models "between-chunk coherence" across four dimensions: Intra-Domain Relevance, Noise Resistance, Informational Bonding, and Factual Consistency. Our pipeline transforms retrieved passages into directed heterogeneous entity graphs, amplifies factual anchors via min-out-degree reweighting, encodes structural patterns through a Relational Graph Convolutional Network, and fuses inter-chunk coherence with query relevance for final ranking. Evaluated across four multi-hop benchmarks, CAGE matches or outperforms strong baselines including monoT5 in Recall@5 on bridge-dominated datasets and consistently improves downstream Exact Match, demonstrating that structurally coherent context yields more precise answers even when retrieval recall is comparable or lower.

cs.CL↗

arXiv2026

SAFARI: Scaling Long Horizon Agentic Fault Attribution via Active Investigation

As autonomous agents tackle increasingly complex multi-step, multi-agent tasks, their execution trajectories have scaled beyond the constraints of even the largest context windows. Current methods for effectively diagnosing agent failures load the full trajectory into an LLM's context window, which suffers from attention dilution and fails when agentic traces inevitably exceed context limits. To address this, we introduce SAFARI (Scaling long-horizon Agentic Fault AttRibution via active Investigation), a framework that replaces linear context loading with a tool-augmented diagnostic loop. By equipping LLMs with a specialized toolbox to read and search trajectory segments alongside a persistent Short-Term Memory (STM) for cross-turn reasoning, SAFARI effectively decouples diagnostic accuracy from architectural context limits. Our experiments demonstrate that SAFARI outperforms state-of-the-art results by 20% on the Who&When dataset within a 1M token budget, and by 19% on TRAIL GAIA subset on a 25K token budget. Most significantly, SAFARI maintains a 0.58 precision even when the target fault resides 5x beyond the model's native context window, a scenario where traditional evaluators fail entirely.

cs.AI↗

arXiv2026

Alignment-Weighted DPO: A principled reasoning approach to improve safety alignment

Recent advances in alignment techniques such as Supervised Fine-Tuning (SFT), Reinforcement Learning from Human Feedback (RLHF), and Direct Preference Optimization (DPO) have improved the safety of large language models (LLMs). However, these LLMs remain vulnerable to jailbreak attacks that disguise harmful intent through indirect or deceptive phrasing. Using causal intervention, we empirically demonstrate that this vulnerability stems from shallow alignment mechanisms that lack deep reasoning, often rejecting harmful prompts without truly understanding why they are harmful. To mitigate this vulnerability, we propose enhancing alignment through reasoning-aware post-training. We construct and release a novel Chain-of-Thought (CoT) fine-tuning dataset that includes both utility-oriented and safety-critical prompts with step-by-step rationales. Fine-tuning on this dataset encourages models to produce principled refusals grounded in reasoning, outperforming standard SFT baselines. Furthermore, inspired by failure patterns in CoT fine-tuning, we introduce Alignment-Weighted DPO, which targets the most problematic parts of an output by assigning different preference weights to the reasoning and final-answer segments. This produces finer-grained, targeted updates than vanilla DPO and improves robustness to diverse jailbreak strategies. Extensive experiments across multiple safety and utility benchmarks show that our method consistently improves alignment robustness while maintaining overall model utility.

cs.CL↗

arXiv2026

DF-RAG: Query-Aware Diversity for Retrieval-Augmented Generation

Retrieval-augmented generation (RAG) is a common technique for grounding language model outputs in domain-specific information. However, RAG is often challenged by reasoning-intensive question-answering (QA), since common retrieval methods like cosine similarity maximize relevance at the cost of introducing redundant content, which can reduce information recall. To address this, we introduce Diversity-Focused Retrieval-Augmented Generation (DF-RAG), which systematically incorporates diversity into the retrieval step to improve performance on complex, reasoning-intensive QA benchmarks. DF-RAG builds upon the Maximal Marginal Relevance framework to select information chunks that are both relevant to the query and maximally dissimilar from each other. A key innovation of DF-RAG is its ability to optimize the level of diversity for each query dynamically at test time without requiring any additional fine-tuning or prior information. We show that DF-RAG improves F1 performance on reasoning-intensive QA benchmarks by 4-10 percent over vanilla RAG using cosine similarity and also outperforms other established baselines. Furthermore, we estimate an Oracle ceiling of up to 18 percent absolute F1 gains over vanilla RAG, of which DF-RAG captures up to 91.3 percent.

cs.CL↗

arXiv2025

LLM Optimization Unlocks Real-Time Pairwise Reranking

Efficiently reranking documents retrieved from information retrieval (IR) pipelines to enhance overall quality of Retrieval-Augmented Generation (RAG) system remains an important yet challenging problem. Recent studies have highlighted the importance of Large Language Models (LLMs) in reranking tasks. In particular, Pairwise Reranking Prompting (PRP) has emerged as a promising plug-and-play approach due to its usability and effectiveness. However, the inherent complexity of the algorithm, coupled with the high computational demands and latency incurred due to LLMs, raises concerns about its feasibility in real-time applications. To address these challenges, this paper presents a focused study on pairwise reranking, demonstrating that carefully applied optimization methods can significantly mitigate these issues. By implementing these methods, we achieve a remarkable latency reduction of up to 166 times, from 61.36 seconds to 0.37 seconds per query, with an insignificant drop in performance measured by Recall@k. Our study highlights the importance of design choices that were previously overlooked, such as using smaller models, limiting the reranked set, using lower precision, reducing positional bias with one-directional order inference, and restricting output tokens. These optimizations make LLM-based reranking substantially more efficient and feasible for latency-sensitive, real-world deployments.

cs.CL↗

arXiv2025

Readability Reconsidered: A Cross-Dataset Analysis of Reference-Free Metrics

Automatic readability assessment plays a key role in ensuring effective and accessible written communication. Despite significant progress, the field is hindered by inconsistent definitions of readability and measurements that rely on surface-level text properties. In this work, we investigate the factors shaping human perceptions of readability through the analysis of 897 judgments, finding that, beyond surface-level cues, information content and topic strongly shape text comprehensibility. Furthermore, we evaluate 15 popular readability metrics across five English datasets, contrasting them with six more nuanced, model-based metrics. Our results show that four model-based metrics consistently place among the top four in rank correlations with human judgments, while the best performing traditional metric achieves an average rank of 8.6. These findings highlight a mismatch between current readability metrics and human perceptions, pointing to model-based approaches as a more promising direction.

cs.CL↗

arXiv2025

Harmonizing Diverse Models: A Layer-wise Merging Strategy for Consistent Generation

Retrieval-Augmented Generation (RAG) systems leverage Large Language Models (LLMs) to generate accurate and reliable responses that are grounded in retrieved context. However, LLMs often generate inconsistent outputs for semantically equivalent inputs, a problem compounded by the scarcity of consistency-focused training data and the limitations of current fine-tuning techniques in enhancing output consistency. We propose a new approach combining systematic synthetic data generation, triplet loss for better embeddings, and a novel layer-wise model merging approach. Using consistency-aware weights derived from intermediate layer activations, our method effectively integrates knowledge from specialized models. Experimental results how that our merged model significantly enhances output consistency, achieving a ~47.5\% improvement in response similarity over the baseline, thus offering a practical solution for increasing the reliability of an industrial RAG system.

cs.CL↗

arXiv2025

Confidence-Based Response Abstinence: Improving LLM Trustworthiness via Activation-Based Uncertainty Estimation

We propose a method for confidence estimation in retrieval-augmented generation (RAG) systems that aligns closely with the correctness of large language model (LLM) outputs. Confidence estimation is especially critical in high-stakes domains such as finance and healthcare, where the cost of an incorrect answer outweighs that of not answering the question. Our approach extends prior uncertainty quantification methods by leveraging raw feed-forward network (FFN) activations as auto-regressive signals, avoiding the information loss inherent in token logits and probabilities after projection and softmax normalization. We model confidence prediction as a sequence classification task, and regularize training with a Huber loss term to improve robustness against noisy supervision. Applied in a real-world financial industry customer-support setting with complex knowledge bases, our method outperforms strong baselines and maintains high accuracy under strict latency constraints. Experiments on Llama 3.1 8B model show that using activations from only the 16th layer preserves accuracy while reducing response latency. Our results demonstrate that activation-based confidence modeling offers a scalable, architecture-aware path toward trustworthy RAG deployment.

cs.CL↗

arXiv2025

Improving Consistency in Retrieval-Augmented Systems with Group Similarity Rewards

RAG systems are increasingly deployed in high-stakes domains where users expect outputs to be consistent across semantically equivalent queries. However, existing systems often exhibit significant inconsistencies due to variability in both the retriever and generator (LLM), undermining trust and reliability. In this work, we focus on information consistency, i.e., the requirement that outputs convey the same core content across semantically equivalent inputs. We introduce a principled evaluation framework that decomposes RAG consistency into retriever-level, generator-level, and end-to-end components, helping identify inconsistency sources. To improve consistency, we propose Paraphrased Set Group Relative Policy Optimization (PS-GRPO), an RL approach that leverages multiple rollouts across paraphrased set to assign group similarity rewards. We leverage PS-GRPO to achieve Information Consistent RAG (Con-RAG), training the generator to produce consistent outputs across paraphrased queries and remain robust to retrieval-induced variability. Because exact reward computation over paraphrase sets is computationally expensive, we also introduce a scalable approximation method that retains effectiveness while enabling efficient, large-scale training. Empirical evaluations across short-form, multi-hop, and long-form QA benchmarks demonstrate that Con-RAG significantly improves both consistency and accuracy over strong baselines, even in the absence of explicit ground-truth supervision. Our work provides practical solutions for evaluating and building reliable RAG systems for safety-critical deployments.

cs.CL↗

arXiv2025

Uncertainty as Feature Gaps: Epistemic Uncertainty Quantification of LLMs in Contextual Question-Answering

Uncertainty Quantification (UQ) research has primarily focused on closed-book factual question answering (QA), while contextual QA remains unexplored, despite its importance in real-world applications. In this work, we focus on UQ for the contextual QA task and propose a theoretically grounded approach to quantify epistemic uncertainty. We begin by introducing a task-agnostic, token-level uncertainty measure defined as the cross-entropy between the predictive distribution of the given model and the unknown true distribution. By decomposing this measure, we isolate the epistemic component and approximate the true distribution by a perfectly prompted, idealized model. We then derive an upper bound for epistemic uncertainty and show that it can be interpreted as semantic feature gaps in the given model's hidden representations relative to the ideal model. We further apply this generic framework to the contextual QA task and hypothesize that three features approximate this gap: context-reliance (using the provided context rather than parametric knowledge), context comprehension (extracting relevant information from context), and honesty (avoiding intentional lies). Using a top-down interpretability approach, we extract these features by using only a small number of labeled samples and ensemble them to form a robust uncertainty score. Experiments on multiple QA benchmarks in both in-distribution and out-of-distribution settings show that our method substantially outperforms state-of-the-art unsupervised (sampling-free and sampling-based) and supervised UQ methods, achieving up to a 13-point PRR improvement while incurring a negligible inference overhead.

cs.CL↗

arXiv2025

A Comparison of Independent and Joint Fine-tuning Strategies for Retrieval-Augmented Generation

A Comparison of Independent and Joint Fine-tuning Strategies for Retrieval-Augmented Generation Download PDF Neal Gregory Lawton, Alfy Samuel, Anoop Kumar, Daben Liu Published: 20 Aug 2025, Retrieval augmented generation (RAG) is a popular framework for question answering that is powered by two large language models (LLMs): an embedding model that retrieves context documents from a database that are relevant to a given question, and a generator model that uses the retrieved context to generate an answer to the question. Both the embedding and generator models can be fine-tuned to increase performance of a RAG pipeline on a new task, but multiple fine-tuning strategies exist with different costs and benefits. In this paper, we evaluate and compare several RAG fine-tuning strategies, including independent, joint, and two-phase fine-tuning. In our experiments, we observe that all of these strategies achieve about equal improvement in EM and F1 generation quality metrics, although they have significantly different computational costs. We conclude the optimal fine-tuning strategy to use depends on whether the training dataset includes context labels and whether a grid search over the learning rates for the embedding and generator models is required.

cs.CL↗

arXiv2025

Play by the Type Rules: Inferring Constraints for LLM Functions in Declarative Programs

Integrating LLM powered operators in declarative query languages allows for the combination of cheap and interpretable functions with powerful, generalizable language model reasoning. However, in order to benefit from the optimized execution of a database query language like SQL, generated outputs must align with the rules enforced by both type checkers and database contents. Current approaches address this challenge with orchestrations consisting of many LLM-based post-processing calls to ensure alignment between generated outputs and database values, introducing performance bottlenecks. We perform a study on the ability of various sized open-source language models to both parse and execute functions within a query language based on SQL, showing that small language models can excel as function executors over hybrid data sources. Then, we propose an efficient solution to enforce the well-typedness of LLM functions, demonstrating 7% accuracy improvement on a multi-hop question answering dataset with 53% improvement in latency over comparable solutions. We make our implementation available at https://github.com/parkervg/blendsql

cs.CL↗

arXiv2025

RAFFLES: Reasoning-based Attribution of Faults for LLM Systems

The advent of complex, interconnected long-horizon LLM systems has made it incredibly tricky to identify where and when these systems break down. Evaluation capabilities that currently exist today are limited in that they often focus on simple metrics, end-to-end outcomes, and are dependent on the perspectives of humans. In order to match the increasing complexity of these many component systems, evaluation frameworks must also be able to reason, probe, iterate, and understand the nuanced logic passing through these systems. In this paper, we present RAFFLES, an offline evaluation architecture that incorporates iterative reasoning. Specifically, RAFFLES operates as an iterative, multi-component pipeline, using a central Judge to systematically identify faults and a set of specialized Evaluators to assess the quality of the candidate faults as well as rationales of the Judge. We evaluated RAFFLES with several benchmarks - the Who&When dataset to identify step-level faults in multi-agent systems and the ReasonEval datasets to diagnose step-level mathematical reasoning errors. RAFFLES outperforms strong baselines, achieving an accuracy of over 20% and 50% on the Who&When Hand-Crafted and Algorithmically-Generated datasets, and over 80% on the ReasonEval datasets. These results demonstrate a key step towards introducing automated fault detection for autonomous systems over labor-intensive manual review.

cs.AI↗

arXiv2025

TruthTorchLM: A Comprehensive Library for Predicting Truthfulness in LLM Outputs

Generative Large Language Models (LLMs)inevitably produce untruthful responses. Accurately predicting the truthfulness of these outputs is critical, especially in high-stakes settings. To accelerate research in this domain and make truthfulness prediction methods more accessible, we introduce TruthTorchLM an open-source, comprehensive Python library featuring over 30 truthfulness prediction methods, which we refer to as Truth Methods. Unlike existing toolkits such as Guardrails, which focus solely on document-grounded verification, or LM-Polygraph, which is limited to uncertainty-based methods, TruthTorchLM offers a broad and extensible collection of techniques. These methods span diverse tradeoffs in computational cost, access level (e.g., black-box vs white-box), grounding document requirements, and supervision type (self-supervised or supervised). TruthTorchLM is seamlessly compatible with both HuggingFace and LiteLLM, enabling support for locally hosted and API-based models. It also provides a unified interface for generation, evaluation, calibration, and long-form truthfulness prediction, along with a flexible framework for extending the library with new methods. We conduct an evaluation of representative truth methods on three datasets, TriviaQA, GSM8K, and FactScore-Bio. The code is available at https://github.com/Ybakman/TruthTorchLM

cs.CL↗

arXiv2025

FB-RAG: Improving RAG with Forward and Backward Lookup

Traditional Retrieval-Augmented Generation (RAG) struggles with complex queries that lack strong signals to retrieve the most relevant context, forcing a trade-off between choosing a small context that misses key information and a large context that confuses the LLM. To address this, we propose Forward-Backward RAG (FB-RAG), a new training-free framework based on a simple yet powerful forward-looking strategy. FB-RAG employs a light-weight LLM to peek into potential future generations, using evidence from multiple sampled outputs to precisely identify the most relevant context for a final, more powerful generator. This improves performance without complex finetuning or Reinforcement Learning common in prior work. Across $9$ datasets from LongBench and $\infty$Bench, FB-RAG consistently delivers strong results. Further, the performance gains can be achieved with reduced latency due to a shorter, more focused prompt for the powerful generator. On EN.QA dataset, FB-RAG matches the leading baseline with over $48$% latency reduction or achieves an $8$% performance improvement with a $10$% latency reduction. Our analysis finds cases where even when the forward-looking LLM fails to generate correct answers, its attempts are sufficient to guide the final model to an accurate response, demonstrating how smaller LLMs can systematically improve the performance and efficiency of larger ones.

cs.CL↗

arXiv2024

Refusal Tokens: A Simple Way to Calibrate Refusals in Large Language Models

A key component of building safe and reliable language models is enabling the models to appropriately refuse to follow certain instructions or answer certain questions. We may want models to output refusal messages for various categories of user queries, for example, ill-posed questions, instructions for committing illegal acts, or queries which require information past the model's knowledge horizon. Engineering models that refuse to answer such questions is complicated by the fact that an individual may want their model to exhibit varying levels of sensitivity for refusing queries of various categories, and different users may want different refusal rates. The current default approach involves training multiple models with varying proportions of refusal messages from each category to achieve the desired refusal rates, which is computationally expensive and may require training a new model to accommodate each user's desired preference over refusal rates. To address these challenges, we propose refusal tokens, one such token for each refusal category or a single refusal token, which are prepended to the model's responses during training. We then show how to increase or decrease the probability of generating the refusal token for each category during inference to steer the model's refusal behavior. Refusal tokens enable controlling a single model's refusal rates without the need of any further fine-tuning, but only by selectively intervening during generation.

cs.LG↗

arXiv2024

Retrieval Augmented Correction of Named Entity Speech Recognition Errors

In recent years, end-to-end automatic speech recognition (ASR) systems have proven themselves remarkably accurate and performant, but these systems still have a significant error rate for entity names which appear infrequently in their training data. In parallel to the rise of end-to-end ASR systems, large language models (LLMs) have proven to be a versatile tool for various natural language processing (NLP) tasks. In NLP tasks where a database of relevant knowledge is available, retrieval augmented generation (RAG) has achieved impressive results when used with LLMs. In this work, we propose a RAG-like technique for correcting speech recognition entity name errors. Our approach uses a vector database to index a set of relevant entities. At runtime, database queries are generated from possibly errorful textual ASR hypotheses, and the entities retrieved using these queries are fed, along with the ASR hypotheses, to an LLM which has been adapted to correct ASR errors. Overall, our best system achieves 33%-39% relative word error rate reductions on synthetic test sets focused on voice assistant queries of rare music entities without regressing on the STOP test set, a publicly available voice assistant test set covering many domains.

eess.AS↗

arXiv2021

Exploring Retraining-Free Speech Recognition for Intra-sentential Code-Switching

In this paper, we present our initial efforts for building a code-switching (CS) speech recognition system leveraging existing acoustic models (AMs) and language models (LMs), i.e., no training required, and specifically targeting intra-sentential switching. To achieve such an ambitious goal, new mechanisms for foreign pronunciation generation and language model (LM) enrichment have been devised. Specifically, we have designed an automatic approach to obtain high quality pronunciation of foreign language (FL) words in the native language (NL) phoneme set using existing acoustic phone decoders and an LSTM-based grapheme-to-phoneme (G2P) model. Improved accented pronunciations have thus been obtained by learning foreign pronunciations directly from data. Furthermore, a code-switching LM was deployed by converting the original NL LM into a CS LM using translated word pairs and borrowing statistics for the NL LM. Experimental evidence clearly demonstrates that our approach better deals with accented foreign pronunciations than techniques based on human labeling. Moreover, our best system achieves a 55.5% relative word error rate reduction from 34.4%, obtained with a conventional monolingual ASR system, to 15.3% on an intra-sentential CS task without harming the monolingual recognition accuracy.

eess.AS↗