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Dalit Engelhardt

Publications and source records attributed to Dalit Engelhardt.

6 recordsLinked to original sources

Dynamic Control of Stochastic Evolution: A Deep Reinforcement Learning Approach to Adaptively Targeting Emergent Drug Resistance

The challenge in controlling stochastic systems in which low-probability events can set the system on catastrophic trajectories is to develop a robust ability to respond to such events without significantly compromising the optimality of the baseline control policy. This paper presents CelluDose, a stochastic simulation-trained deep reinforcement learning adaptive feedback control prototype for automated precision drug dosing targeting stochastic and heterogeneous cell proliferation. Drug resistance can emerge from random and variable mutations in targeted cell populations; in the absence of an appropriate dosing policy, emergent resistant subpopulations can proliferate and lead to treatment failure. Dynamic feedback dosage control holds promise in combatting this phenomenon, but the application of traditional control approaches to such systems is fraught with challenges due to the complexity of cell dynamics, uncertainty in model parameters, and the need in medical applications for a robust controller that can be trusted to properly handle unexpected outcomes. Here, training on a sample biological scenario identified single-drug and combination therapy policies that exhibit a 100% success rate at suppressing cell proliferation and responding to diverse system perturbations while establishing low-dose no-event baselines. These policies were found to be highly robust to variations in a key model parameter subject to significant uncertainty and unpredictable dynamical changes.

q-bio.PE

Mutation rate variability as a driving force in adaptive evolution

Mutation rate is a key determinant of the pace as well as outcome of evolution, and variability in this rate has been shown in different scenarios to play a key role in evolutionary adaptation and resistance evolution under stress caused by selective pressure. Here we investigate the dynamics of resistance fixation in a bacterial population with variable mutation rates and show that evolutionary outcomes are most sensitive to mutation rate variations when the population is subject to environmental and demographic conditions that suppress the evolutionary advantage of high-fitness subpopulations. By directly mapping a biophysical fitness function to the system-level dynamics of the population we show that both low and very high, but not intermediate, levels of stress in the form of an antibiotic result in a disproportionate effect of hypermutation on resistance fixation. We demonstrate how this behavior is directly tied to the extent of genetic hitchhiking in the system, the propagation of high-mutation rate cells through association with high-fitness mutations. Our results indicate a substantial role for mutation rate flexibility in the evolution of antibiotic resistance under conditions that present a weak advantage over wildtype to resistant cells.

q-bio.PE

Comments on Thermalization in 2D CFT

We revisit certain aspects of thermalization in 2D CFT. In particular, we consider similarities and differences between the time dependence of correlation functions in various states in rational and non-rational CFTs. We also consider the distinction between global and local thermalization and explain how states obtained by acting with a diffeomorphism on the ground state can appear locally thermal, and we review why the time-dependent expectation value of the energy-momentum tensor is generally a poor diagnostic of global thermalization. Since all 2D CFTs have an infinite set of commuting conserved charges, generic initial states might be expected to give rise to a generalized Gibbs ensemble rather than a pure thermal ensemble at late times. We construct the holographic dual of the generalized Gibbs ensemble and show that, to leading order, it is still described by a BTZ black hole. The extra conserved charges, while rendering $c < 1$ theories essentially integrable, therefore seem to have little effect on large-$c$ conformal field theories.

hep-th

Quench Dynamics in Confined 1+1-Dimensional Systems

We present a framework for investigating the response of conformally-invariant confined 1+1-dimensional systems to a quantum quench. While conformal invariance is generally destroyed in a global quantum quench, systems that can be described as or mapped to integrable deformations of a CFT may present special instances where a conformal field theory-based analysis could provide useful insight into the non-equilibrium dynamics. We investigate this possibility by considering a quench analogous to that of the Quantum Newton's Cradle experiment [Nature 440, 900 (2006)] and demonstrating qualitative agreement between observables derived in the CFT framework and those of the experimental system. We propose that this agreement may be a feature of the proximity of the experimental system to an integrable deformation of a c=1 CFT.

hep-th

Electric fields and quantum wormholes

Electric fields can thread a classical Einstein-Rosen bridge. Maldacena and Susskind have recently suggested that in a theory of dynamical gravity the entanglement of ordinary perturbative quanta should be viewed as creating a quantum version of an Einstein-Rosen bridge between the particles, or a "quantum wormhole". We demonstrate within low-energy effective field theory that there is a precise sense in which electric fields can also thread such quantum wormholes. We define a non-perturbative "wormhole susceptibility" that measures the ease of passing an electric field through any sort of wormhole. The susceptibility of a quantum wormhole is suppressed by powers of the U(1) gauge coupling relative to that for a classical wormhole but can be made numerically equal with a sufficiently large amount of entangled matter.

hep-th

Accurate Mass Determinations in Decay Chains with Missing Energy

Many beyond the Standard Model theories include a stable dark matter candidate that yields missing / invisible energy in collider detectors. If observed at the Large Hadron Collider, we must determine if its mass and other properties (and those of its partners) predict the correct dark matter relic density. We give a new procedure for determining its mass with small error.

hep-ph