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Damian G. Allis

Publications and source records attributed to Damian G. Allis.

6 recordsLinked to original sources

Electron-Induced Formation of C$_{2}$ on Si(100) from Acetylene and Ethylene

Hydrogen Desorption Lithography on Si(100) demonstrates the ability of the Scanning Tunneling Microscope (STM) to create functional atomic-scale structures and devices. The dehydrogenation of adsorbed molecules represents a potential complementary technique that has received little attention. For example, formation of C$_{2}$ could introduce local strain or act as centers for subsequent reactions and would inform positionally controlled mechanosynthesis, an approach with vast potential in surface patterning and functionalization. Here, we studied the electron-induced dehydrogenation of acetylene and ethylene on Si(100) at 4 K using STM. Excitation of acetylene at +3.2 V and above induces configurational switching, including to a new sublayer-bonded geometry previously predicted to be an adsorption precursor, as well as migration and desorption. Excitation also induces dehydrogenation to C$_{2}$. Switching between three observed C$_{2}$ configurations can be induced by excitation at +4.2 V and above. Simulations using density functional theory reproduced the experimental images based on choice of functional, dimer-buckling averaging, and inclusion of diffuse basis functions. In addition, dehydrogenation could be induced using field-emitted electrons on a scale ranging from a single molecule to a radius of >10 nm. These observations highlight the potential of carbon dehydrogenation as an additional tool in Atomically Precise Fabrication (APF).

cond-mat.mtrl-sci↗

Towards Atom-by-Atom Fabrication: Mechanosynthetic donation and abstraction

Enabled by inverted-mode scanning tunneling microscopy (IM-STM) and the use of functionalized molecular tools, we demonstrate positionally-controlled mechanosynthetic addition (donation) of carbon and subtraction (abstraction) of silicon atoms on a model build site: atomically clean and crystalline Si(100). The resulting structures represent the first demonstrations of an emerging ability to manipulate radical chemistry with positional control of specific atoms and moieties in 3D. Furthermore, by comparing the behavior of molecular tools designed for atomic donation versus abstraction, we highlight general principles governing molecular tool design for selective and reliable mechanosynthetic functionality.

cond-mat.mtrl-sci↗

Atomically precise mechanosynthesis of carbon structures on hydrogenated Si(100) by inverted-mode STM

The ability to build atomically precise structures on surfaces with complete control over both atomic placement and chemical bonding remains a central challenge in nanoscale fabrication. Here, we demonstrate simultaneous spatial and chemical control over the mechanosynthetic fabrication of carbon structures. Using inverted-mode STM, C$_2$ units are donated from surface-deposited molecules to pre-patterned reactive sites on a hydrogen-passivated Si(100) surface. We demonstrate single-site C$_2$ donation, spatially patterned multi-site C$_2$ donation, and the stepwise assembly of polyyne structures through successive C-C bond formation. Together, these results establish controlled mechanosynthetic donation as a foundational capability for programmable atomically precise fabrication.

cond-mat.mtrl-sci↗

Molecular Tools for Non-Planar Surface Chemistry

Scanning probe microscopy (SPM) investigations of on-surface chemistry on passivated silicon have only shown in-plane chemical reactions, and studies on bare silicon are limited in facilitating additional reactions post-molecular-attachment. Here, we enable subsequent reactions on Si(100) through selectively adsorbing 3D, silicon-specific "molecular tools". Following an activation step, the molecules present an out-of-plane radical that can function both to donate or accept molecular fragments, thereby enabling applications across multiple scales, e.g., macroscale customizable silicon-carbon coatings or nanoscale tip-mediated mechanosynthesis. Creation of many such molecular tools is enabled by broad molecular design criteria that facilitate reproducibility, surface specificity, and experimental verifiability. These criteria are demonstrated using a model molecular tool tetrakis(iodomethyl)germane ($Ge(CH_{2}I)_{4}$; TIMe-Ge), with experimental validation by SPM and X-ray photoelectron spectroscopy (XPS), and theoretical support by density functional theory (DFT) investigations. With this framework, a broad and diverse range of new molecular engineering capabilities are enabled on silicon.

cond-mat.mtrl-sci↗

Design of a molecular Field Effect Transistor (mFET)

Field Effect Transistors (FETs) are ubiquitous in electronics. As we scale FETs to ever smaller sizes, it becomes natural to ask how small a practical FET might be. We propose and analyze an atomically precise molecular FET (herein referred to as an "mFET") with 7,694 atoms made only of hydrogen and carbon atoms. It uses metallic (4,4) carbon nanotubes as the conductive leads, a linear segment of Lonsdaleite (hexagonal diamond) as the channel, Lonsdaleite as the insulating layer between the channel and the gate, and a (20,20) metallic carbon nanotube as the surrounding gate. The (4,4) nanotube leads are bonded to the channel using a mix of 5- and 6-membered rings, and to the gate using 5-, 6- and 7-membered rings. Issues of component design assessment and optimization using quantum chemical methods are discussed throughout. A 10 watt sugar-cube-sized computer made with $10^{18}$ such mFETs could deliver $\sim 10^{25}$ switching operations per second.

cs.ET↗

Evaluating the Friction of Rotary Joints in Molecular Machines

A computationally-efficient method for evaluating friction in molecular rotary bearings is presented. This method estimates drag from fluctuations in molecular dynamics simulations via the fluctuation-dissipation theorem. This is effective even for simulation times short compared to a bearing's energy damping time and for rotation speeds comparable to or below typical thermal values. We apply this method to two molecular rotary bearings of similar size at 300K: previously studied nested (9,9)/(14,14) double-walled carbon nanotubes and a hypothetical rotary joint consisting of single acetylenic bonds in a rigid diamondoid housing. The acetylenic joint has a rotational frictional drag coefficient of $2 \times 10^{-35}\,\mbox{kg m${}^2$/s}$. The friction for the nested nanotubes is 120 times larger, comparable to values reported by previous studies. This fluctuation-based method could evaluate dissipation in a variety of molecular systems with similarly rigid and symmetric bearings.

cond-mat.soft↗