arXiv subjects

Damien Faivre

Publications and source records attributed to Damien Faivre.

6 recordsLinked to original sources

arXiv2025

Driven shear flow in biological magneto-active fluids

Active fluids made of powered suspended particles have unique abilities to self-generate flow and density structures. How such dynamics can be triggered and leveraged by external cues is a key question of both biological and applied relevance. Here we use magnetotactic bacteria to explore how chemotaxis and magnetotaxis -- leading, respectively, to positional and orientational responses -- combine to generate global scale flows. Such steady regime can be quantitatively captured by a magneto-active hydrodynamic model, while time-dependent magnetic driving unveils additional patterning complexity. Overall, our findings shed light on how active fluids respond to the ubiquitous situation of multiple external information, also suggesting routes for their manipulation.

cond-mat.soft↗

arXiv2025

Image-based physical characterization of magnetotactic bacteria from an environmental sample

Magnetotactic bacteria (MTB) are a diverse group of microorganisms that are able to biomineralize magnetic nanoparticles. Most MTB remain uncultured, making population-level characterization from natural environments difficult. We report the discovery of a new and diverse MTB-rich site in the Ogre River, Latvia, and present an integrated approach combining 16S rRNA sequencing, transmission electron microscopy, and novel open-source, automated image-based physical methods to characterize bacteria populations within environmental samples. We introduce a pipeline for cell velocimetry using a static magnetic field and a method to classify cell populations based on their magnetic moment using a modified U-turn method where cell behavior is studied in an alternating magnetic field. This study demonstrates that our physical analysis methods provide a powerful, fast, and robust toolset for MTB population analysis in complex environmental samples.

physics.bio-ph↗

arXiv2024

Magnetic control of magnetotactic bacteria swarms

Magnetotactic bacteria (MTB) are of significant fundamental and practical interest, especially for applications such as drug delivery and general-purpose object manipulators and payload carriers. While magnetic and other modes of control for individual MTB have been demonstrated, formation, motion and control of MTB swarms are much less studied and understood. Here, we present a torque dipole-based theoretical model for magnetic control of MTB swarms and two methods for swarm formation, and provide experimental validation of the proposed motion model. Model predictions are in good qualitative and quantitative agreement with experiments and literature. Additionally, we were able to determine the torque generated by Magnetospirillium gryphiswaldense (MSR-1) MTB, and the value corresponds to the reported estimates reasonably well.

physics.bio-ph↗

arXiv2022

An open-source automated magnetic optical density meter for analysis of suspensions of magnetic cells and particles

We present a spectrophotometer (optical density meter) combined with electromagnets dedicated to the analysis of suspensions of magnetotactic bacteria. The instrument can also be applied to suspensions of other magnetic cells and magnetic particles. We have ensured that our system, called MagOD, can be easily reproduced by providing the source of the 3D prints for the housing, electronic designs, circuit board layouts, and microcontroller software. We compare the performance of our system to existing adapted commercial spectrophotometers. In addition, we demonstrate its use by analyzing the absorbance of magnetotactic bacteria as a function of their orientation with respect to the light path and their speed of reorientation after the field has been rotated by 90 degrees. We continuously monitored the development of a culture of magnetotactic bacteria over a period of five days, and measured the development of their velocity distribution over a period of one hour. Even though this dedicated spectrophotometer is relatively simple to construct and cost-effective, a range of magnetic field-dependent parameters can be extracted from suspensions of magnetotactic bacteria. Therefore, this instrument will help the magnetotactic research community to understand and apply this intriguing micro-organism.

physics.ins-det↗

arXiv2019

Magnetic Nanoparticle Chains in Gelatin Ferrogels: Bioinspiration from Magnetotactic Bacteria

Inspired by chains of ferrimagnetic nanocrystals (NCs) in magnetotactic bacteria (MTB), the synthesis and detailed characterization of ferrimagnetic magnetite NC chain-like assemblies is reported. An easy green synthesis route in a thermoreversible gelatin hydrogel matrix is used. The structure of these magnetite chains prepared with and without gelatin is characterized by means of transmission electron microscopy, including electron tomography (ET). These structures indeed bear resemblance to the magnetite assemblies found in MTB, known for their mechanical flexibility and outstanding magnetic properties and known to crystallographically align their magnetite NCs along the strongest <111> magnetization easy axis. Using electron holography (EH) and angular dependent magnetic measurements, the magnetic interaction between the NCs and the generation of a magnetically anisotropic material can be shown. The electro- and magnetostatic modeling demonstrates that in order to precisely determine the magnetization (by means of EH) inside chain-like NCs assemblies, their exact shape, arrangement and stray-fields have to be considered (ideally obtained using ET).

cond-mat.mtrl-sci↗

arXiv2018

Using Shape Diversity on the way to new Structure-Function Designs for Magnetic Micropropellers

Synthetic microswimmers mimicking biological movements at the microscale have been developed in recent years. Actuating helical magnetic materials with a homogeneous rotating magnetic field is one of the most widespread techniques for propulsion at the microscale, partly because the actuation strategy revolves around a simple linear relationship between the actuating field frequency and the propeller velocity. However, the full control of the swimmers' motion has remained a challenge. Increasing the controllability of micropropellers is crucial to achieve complex actuation schemes that in turn are directly relevant for numerous applications. The simplicity of the linear relationship though limits the possibilities and flexibilities of swarm control. Using a pool of randomly-shaped magnetic microswimmers, we show that the complexity of shape can advantageously be translated into enhanced control. In particular, directional reversal of sorted micropropellers is controlled by the frequency of the actuating field. This directionality change is linked to the balance between magnetic and hydrodynamic forces. We further show an example how this behavior can experimentally lead to simple and effective sorting of individual swimmers from a group. The ability of these propellers to reverse swimming direction solely by frequency increases the control possibilities and is an example for propeller designs, where the complexity needed for many applications is embedded directly in the propeller geometry rather than external factors such as actuation sequences.

cond-mat.soft↗