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Damon A. Clark

Publications and source records attributed to Damon A. Clark.

3 recordsLinked to original sources

A behavior-environment information loop drives sensory navigation

As organisms navigate the environment to locate critical resources, their behavioral actions must be tightly coupled to their sensory inputs. Here, we introduce an information-theoretic framework that quantifies this coupling using transfer entropy, which measures information flow between sensory inputs and behavioral outputs. Information flow from sensory inputs to behavior defines a "reactive" component of a navigational strategy, whereas information flow from behavior to sensory inputs defines an "active" component, whereby actions shape subsequent sensory experiences. Analyzing these bidirectional information flows enables us to both predict navigational performance and dissect navigation strategies from trajectories. Using a minimal model that captures the active and reactive components, we connect macroscopic performance to microscopic information flows. We then apply the framework to experimentally measured trajectories of bacteria, worms, and flies, as well as to machine learning agents navigating sensory landscapes. Across systems, bidirectional information flow reliably predicts navigation efficiency, revealing a common behavioral-environment feedback loop. Decomposing active and reactive information flows further exposes distinct strategies underlying bacterial chemotaxis, the spatial dependency of the navigation strategy in fly olfactory navigation, and the learned policies of a reinforcement-trained agent. Together, these results establish bidirectional information flow as a unifying principle for understanding navigation in biological and artificial systems.

physics.bio-ph

Parallel locomotor control strategies in mice and flies

Our understanding of the neural basis of locomotor behavior can be informed by careful quantification of animal movement. Classical descriptions of legged locomotion have defined discrete locomotor gaits, characterized by distinct patterns of limb movement. Recent technical advances have enabled increasingly detailed characterization of limb kinematics across many species, imposing tighter constraints on neural control. Here, we highlight striking similarities between coordination patterns observed in two genetic model organisms: the laboratory mouse and Drosophila. Both species exhibit continuously-variable coordination patterns with similar low-dimensional structure, suggesting shared principles for limb coordination and descending neural control.

q-bio.NC

The Bacterial Chemotactic Response Reflects a Compromise Between Transient and Steady State Behavior

Swimming bacteria detect chemical gradients by performing temporal comparisons of recent measurements of chemical concentration. These comparisons are described quantitatively by the chemotactic response function, which we expect to optimize chemotactic behavioral performance. We identify two independent chemotactic performance criteria: in the short run, a favorable response function should move bacteria up chemoattractant gradients, while in the long run, bacteria should aggregate at peaks of chemoattractant concentration. Surprisingly, these two criteria conflict, so that when one performance criterion is most favorable, the other is unfavorable. Since both types of behavior are biologically relevant, we include both behaviors in a composite optimization that yields a response function that closely resembles experimental measurements. Our work suggests that the bacterial chemotactic response function can be derived from simple behavioral considerations, and sheds light on how the response function contributes to chemotactic performance.

q-bio.CB