arXiv subjects

Dane Morgan

Publications and source records attributed to Dane Morgan.

At least 19 recordsLinked to original sources

arXiv2026

Atomistic modeling of molecular beam epitaxy growth of SrTiO3 and Sr2TiO4 thin films

Molecular beam epitaxy (MBE) is renowned for its potential for atomic layer control, but unexpected growth mechanisms can potentially compromise this level of precision. In this study, we employ first-principles calculations to investigate the atomistic processes governing the MBE growth of perovskite SrTiO3 and Ruddlesden-Popper Sr2TiO4 films on a SrTiO3 substrate. We systematically explore the potential molecular species in the gas phase and their reactions and diffusion dynamics on the film surfaces and layer edges. Our analyses uncover three mechanisms of importance for understanding this type of growth. First, oxygen vacancies can be dynamically induced during surface diffusion on defect-free substrate and noticeably accelerate the diffusion processes. Second, while the SrO layer is expected to grow in a single-layer growth mode, the presence of potential TiSr defects may promote the formation of SrO islands. Lastly, adsorbed Ti atoms and TiO2 molecules on the SrO bilayer can insert into SrO bilayers, resulting in an unexpected growth sequence. These findings may have broader implications for the MBE growth of metal oxide films and provide guidance for achieving improved control over their growth processes.

cond-mat.mtrl-sci↗

arXiv2026

Morphology and Dynamics of Self-interstitial Clusters in Irradiated Nickel

Self-interstitial atom (SIA) clustering is a key early step in radiation damage evolution in face-centered cubic (FCC) metals, governing defect transport, recombination, and the long-term microstructural response of irradiated alloys. We combine molecular dynamics (MD) simulations and high-speed (>1000 frames/s) in situ transmission electron microscopy (TEM) to investigate the structure, energetics, and migration dynamics of SIA clusters in FCC Ni. MD simulations show that interstitials initially form disordered dumbbell clusters that evolve into either sessile Frank loops or glissile perfect (prismatic) loops; the latter progressively reorganize into compact ordered configurations with increasing mobility. Direct construction of both loop types over a wide size range, validated against MD-relaxed structures, shows that perfect loops are thermodynamically favored over Frank loops for cluster sizes N greater than or equal to 14, where N is the number of SIAs, with the energetic advantage increasing with cluster size. Nevertheless, substantial kinetic barriers allow Frank loops to persist as metastable defects. For perfect loops, diffusion coefficients computed over N = 16 to 400 reveal a nearly size-independent migration barrier of approximately 0.02 eV, while the diffusion prefactor decreases approximately as N^(-0.54). Trajectory analysis reveals a non-rigid, row-wise relay mechanism in which the number of participating atoms increases systematically with loop size, accounting for much of the observed prefactor scaling. Sub-millisecond in situ TEM observations reveal intermittent loop motion at velocities higher than previously observed but still several orders of magnitude below the intrinsic mobilities predicted by MD, indicating migration through a heterogeneous energy landscape of mobile and pinned states.

cond-mat.mtrl-sci↗

arXiv2026

Accurate Evaluation of Nanoscale Spatiotemporal Dynamics with Electron Correlation Microscopy

Electron correlation microscopy (ECM) can measure materials dynamics with nanoscale spatial resolution from intensity correlation functions. However, adopting X-ray photon correlation spectroscopy (XPCS) normalization frameworks unchanged when calculating intensity correlations can introduce errors. Due to the constrained sampling volumes and larger speckle sizes in nanobeam electron diffraction, XPCS-style time-averaging and scattering-vector averaging introduce systematic artifacts, such as artificial anticorrelations or elevated baselines that lead to systematic errors in structural relaxation times and stretching exponents. This work presents physics-inspired, ECM-specific intensity normalizations over time- and azimuthal-averaged intensities of the first diffraction ring that limit those errors. The framework is validated using molecular dynamics simulations of a CuZr supercooled liquid to benchmark against the self intermediate scattering function, successfully reproducing relaxation times. When applied to experimental time-resolved 4D STEM datasets of a Pt57.5Cu14.7Ni5.3P22.5 nanowire, the method correctly identifies highly stable, unchanging nanoscale crystalline phases that were erroneously misclassified as relaxing domains by previous frameworks. Other previous ECM research is reevaluated in light of these observation. This robust approach establishes an artifact-free pathway for evaluating localized spatiotemporal relaxation behaviors.

cond-mat.mtrl-sci↗

arXiv2026

Thermal Transport in SiC with Intrinsic Defects and Mg Transmutation Products

Silicon carbide is a leading candidate material for advanced nuclear energy systems, but irradiation-induced defects and transmutation products can severely degrade its thermal conductivity. In fusion environments, Mg is predicted to be a major solid transmutant in SiC, yet it is not well understood how different Mg-related defects affect phonon transport. Here, we develop a machine-learning interatomic potential, MLIP4SiC-Mg, for 3C-SiC containing intrinsic point defects, Mg-related defects, and Mg-defect complexes. The potential is trained on a large DFT dataset and reproduces DFT energies, forces, equation-of-state behavior, phonon dispersions, and lattice thermal conductivities with near-DFT accuracy. Combined with Green-Kubo molecular dynamics, force-error correction, and a resistance-based treatment for dilute defective systems, MLIP4SiC-Mg enables quantitative thermal-conductivity calculations in large defective supercells. The corrected thermal conductivity of pristine 3C-SiC is 421 W/(mK) at 300 K, in good agreement with available experimental data. All defects considered strongly reduce thermal conductivity, but their scattering strengths are highly configuration dependent. V_C and Mg_TC act as strong phonon scatterers, whereas isolated Mg_Si is comparatively weak. Residual thermal resistivity analysis shows that defect-induced thermal resistance is not strictly linear with concentration and should be treated as an effective temperature- and concentration-dependent scattering metric. Mg_Si-V_C clustering enhances scattering relative to isolated Mg_Si, but reduces the total excess resistance relative to spatially separated Mg_Si and V_C defects. These results clarify the configuration-dependent role of Mg transmutation in irradiation-degraded SiC and provide an atomistic framework for quantifying defect-controlled heat transport in nuclear ceramics.

cond-mat.mtrl-sci↗

arXiv2026

Machine learning metallic glass critical cooling rates through elemental and molecular simulation based featurization

We have developed a machine learning model for critical cooling rates for metallic glasses based on computational properties. We compare results for features derived from easy-to-compute functions of elemental properties to more complex physically motivated properties using ab initio, machine-learning potentials, and empirical potential molecular dynamics methods. The established approach enables property acquisition across a diverse range of alloys. Analysis of various features for 34 alloys from 20 chemical systems shows that the best model for critical cooling rates was learned from one elemental property-based feature and three simulated features. The elemental property-based feature is an ideal entropy value based on alloy stoichiometry. The simulated features were acquired from estimates of energies above the convex hull, changes in heat capacity, and the fraction of icosahedra-like Voronoi polyhedra. Models were assessed through a demanding cross validation test based on repeatedly leaving out full chemical systems as test sets and had an $R^2$ of 0.78 and a mean average error of 0.76 in units of $[log_{10}(K/s)]$. We demonstrate with Shapley additive explanation analysis that the most impactful features have physically reasonable influence on model predictions. The established methodology can be applied to other high-throughput studies of material properties of diverse compositions.

cond-mat.mtrl-sci↗

arXiv2026

Improving Combined Detection and Classification of TEM Defects via Mask-Conditioned Latent Diffusion Augmentation

Analyzing microstructural defects in transmission electron microscopy (TEM) images, particularly in irradiated metal alloys, is often limited by the availability of high-quality, labeled data. To address this, we introduce a generative data augmentation approach using a mask-conditioned latent diffusion model (LDM) for synthesizing realistic TEM images with controllable, automatically labeled multi-class defect masks. Without requiring manual annotations for generation, our method enables the creation of synthetic image-mask pairs by sampling distributions learned from experimental masks. These generated data were used to augment small experimental datasets of varying sizes (10, 50, and 100 labeled experimental images) to train a Mask Regional Convolutional Neural Network (R-CNN) model for defect detection and classification. Our results show that generative augmentation yields small overall model performance improvements, with up to a 0.02 gain in the harmonic mean of detection and classification F1 scores. However, we also find that the relative contributions to detection and classification improvement depend on the specific train/test data split. These findings highlight the potential of targeted generative models to enhance deep learning performance in data-scarce microscopy-based image quantification tasks.

cs.CV↗

arXiv2026

How Can Machine Learning Accelerate CALPHAD Free Energy Modeling?

The CALPHAD framework provides a rigorous basis for thermodynamic modeling, yet its ability to predict new chemistries is restricted by limited data and by functional forms that rely heavily on composition alone. Here, we show that machine learning (ML) can address these challenges through a hybrid strategy that learns Redlich-Kister (RK) interaction coefficients directly from physically informed elemental descriptors. Using formation energies of 14-element FCC alloys generated by a universal machine-learning interatomic potential (MLIP), we benchmark three classes of models: (1) composition-based RK and ML models, (2) descriptor-based ML models, and (3) a combined ML-augmented RK approach (ML4RK). Leave-one-element-out tests highlight complementary strengths. RK models, class (1), remain the most data-efficient when binary information is available, while descriptor-based ML models, class (2), enable genuine zero-shot extrapolation to elements absent from the training set. By embedding elemental descriptors into the RK framework, the hybrid approach unifies these regimes and enables prediction of interaction parameters for otherwise unknown or data-scarce binaries, class (3). This work demonstrates a physically grounded and data-efficient route to extend CALPHAD models by combining the transferability of ML with the physical grounding, interpretability, data efficiency, and robustness of thermodynamic formalisms.

cond-mat.mtrl-sci↗

arXiv2026

Asymmetric Energy Landscapes Control Diffusion in Glasses

While diffusion in crystalline solids is quantitatively understood through defect-mediated atomic hops, no comparable quantitative framework exists for glasses. In these systems, the origin of large diffusion activation energies remains puzzling, despite local rearrangements involving low barriers. Using molecular dynamics simulations of metallic glasses, we decompose diffusion into random-walk and correlation contributions and find that back-and-forth correlated motion, not local rearrangement barriers, dominates the activation energy, resolving how low-barrier rearrangements yield large macroscopic activation energies. These correlations arise from asymmetry between forward and reverse barriers, a generic feature of disordered energy landscapes. We find that the correlation-driven mechanism is active beyond metallic glass alloys, including SiO2 and a single-component Lennard-Jones glass. The latter demonstrates that the correlation originates from structural disorder rather than chemical complexity. The framework also explains accelerated surface diffusion, where reduced activation energies arise primarily from weaker correlations rather than changes in local rearrangement barriers. Our results establish a direct, quantitative link between atomic-scale dynamics and macroscopic transport, providing a predictive basis for kinetics in disordered materials.

cond-mat.mtrl-sci↗

arXiv2026

Kolmogorov-Arnold Networks Applied to Materials Property Prediction

Kolmogorov-Arnold Networks (KANs) were proposed as an alternative to traditional neural network architectures based on multilayer perceptrons (MLP-NNs). The potential advantages of KANs over MLP-NNs, including significantly enhanced parameter efficiency and increased interpretability, make them a promising new regression model in supervised machine learning problems. We apply KANs to prediction of materials properties, focusing on a diverse set of 33 properties consisting of both experimental and calculated data. We compare the KAN results to random forest, a method that generally gives excellent performance on a wide range of properties predictions with very little optimization. The KANs were worse, on par, or better than random forest about 35%, 60%, and 5% of the time, respectively, and KANs are in practice more difficult to fit than random forest. By tuning the network architecture, we found property fits often resulted in 10-20% lower errors compared to the standard KAN, and typically gave results comparable to random forest. In the specific context of predicting reactor pressure vessel transition temperature shifts, we explored the parameter efficiency and the interpretable power of KANs by comparing predictions of simple KAN models (e.g., < 50 parameters) and closed-form expressions suggested by the KAN fits to previously published deep MLP-NNs and hand-tuned models created using domain expertise of embrittlement physics. We found that simple KAN models and the resulting closed-form expressions produce prediction errors on par with established hand-tuned models with a comparable number of parameters, and required essentially no domain expertise to produce. These findings reinforce the potential applicability of KANs for machine learning in materials science and suggest that KANs should be explored as a regression model for prediction of materials properties.

cond-mat.mtrl-sci↗

arXiv2025

Effects of Yttrium Doping on Oxygen Conductivity in Ba(Fe, Co, Zr, Y)O_{3-\delta} Cathode Materials for Proton Ceramic Fuel Cells

Proton ceramic fuel cells (PCFCs) achieve high efficiency at reduced operating temperatures, but their performance is often limited by slow oxygen reduction reaction (ORR) kinetics at the cathode. The BaCoFeZrY (BCFZY) perovskite family is a promising triple-conducting air-electrode material, yet the role of Y dopants in governing oxygen transport remains unclear. In this study, we examine the effect of Y content on oxygen conductivity in three compositions: BCFZ, BCFZY0.1, and BCFY. Oxygen conductivity was evaluated from the product of oxygen tracer diffusivity and oxygen defect concentration. Ab initio molecular dynamics simulations were used to determine tracer diffusivity and migration energies, while defect concentrations were estimated from reference data. Y doping slightly decreases oxygen conductivity from BCFZ to BCFZY0.1, from 337 to 203 mS/cm at 500 C, with activation energies of 0.155 and 0.172 eV. BCFY shows much lower conductivity (99 mS/cm) and a higher activation energy of 0.261 eV. Computed conductivities are higher and more Arrhenius-like than experimental values, suggesting that microstructural features such as grain boundaries strongly limit oxygen transport in real materials. A series-circuit model combining bulk conductivity and fitted grain-boundary parameters provides semi-quantitative agreement with experiment. These results clarify the role of Y doping in oxygen transport and provide insight for optimizing cathode performance in PCFCs.

cond-mat.mtrl-sci↗

arXiv2025

Physical regularized Hierarchical Generative Model for Metallic Glass Structural Generation and Energy Prediction

Disordered materials such as glasses, unlike crystals, lack long range atomic order and have no periodic unit cells, yielding a high dimensional configuration space with widely varying properties. The complexity not only increases computational costs for atomistic simulations but also makes it difficult for generative AI models to deliver accurate property predictions and realistic structure generation. In this work, we introduce GlassVAE, a hierarchical graph variational autoencoder that uses graph representations to learn compact, rotation, translation, and permutation invariant embeddings of atomic configurations. The resulting structured latent space not only enables efficient generation of novel, physically plausible structures but also supports exploration of the glass energy landscape. To enforce structural realism and physical fidelity, we augment GlassVAE with two physics informed regularizers, a radial distribution function (RDF) loss that captures characteristic short and medium range ordering and an energy regression loss that reflects the broad configurational energetics. Both theoretical analysis and experimental results highlight the critical impact of these regularizers. By encoding high dimensional atomistic data into a compact latent vector and decoding it into structures with accurate energy predictions, GlassVAE provides a fast, physics aware path for modeling and designing disordered materials.

cs.CE↗

arXiv2025

Leveraging Vision Capabilities of Multimodal LLMs for Automated Data Extraction from Plots

Automated data extraction from research texts has been steadily improving, with the emergence of large language models (LLMs) accelerating progress even further. Extracting data from plots in research papers, however, has been such a complex task that it has predominantly been confined to manual data extraction. We show that current multimodal large language models, with proper instructions and engineered workflows, are capable of accurately extracting data from plots. This capability is inherent to the pretrained models and can be achieved with a chain-of-thought sequence of zero-shot engineered prompts we call PlotExtract, without the need to fine-tune. We demonstrate PlotExtract here and assess its performance on synthetic and published plots. We consider only plots with two axes in this analysis. For plots identified as extractable, PlotExtract finds points with over 90% precision (and around 90% recall) and errors in x and y position of around 5% or lower. These results prove that multimodal LLMs are a viable path for high-throughput data extraction for plots and in many circumstances can replace the current manual methods of data extraction.

cs.CV↗

arXiv2025

A practical guide to machine learning interatomic potentials -- Status and future

The rapid development and large body of literature on machine learning interatomic potentials (MLIPs) can make it difficult to know how to proceed for researchers who are not experts but wish to use these tools. The spirit of this review is to help such researchers by serving as a practical, accessible guide to the state-of-the-art in MLIPs. This review paper covers a broad range of topics related to MLIPs, including (i) central aspects of how and why MLIPs are enablers of many exciting advancements in molecular modeling, (ii) the main underpinnings of different types of MLIPs, including their basic structure and formalism, (iii) the potentially transformative impact of universal MLIPs for both organic and inorganic systems, including an overview of the most recent advances, capabilities, downsides, and potential applications of this nascent class of MLIPs, (iv) a practical guide for estimating and understanding the execution speed of MLIPs, including guidance for users based on hardware availability, type of MLIP used, and prospective simulation size and time, (v) a manual for what MLIP a user should choose for a given application by considering hardware resources, speed requirements, energy and force accuracy requirements, as well as guidance for choosing pre-trained potentials or fitting a new potential from scratch, (vi) discussion around MLIP infrastructure, including sources of training data, pre-trained potentials, and hardware resources for training, (vii) summary of some key limitations of present MLIPs and current approaches to mitigate such limitations, including methods of including long-range interactions, handling magnetic systems, and treatment of excited states, and finally (viii) we finish with some more speculative thoughts on what the future holds for the development and application of MLIPs over the next 3-10+ years.

cond-mat.mtrl-sci↗

arXiv2025

Mechanical Properties of the Meninges: Large Language Model Assisted Systematic Review of over 25,000 Studies

Accurate constitutive models and corresponding mechanical property values for the meninges are important for predicting mechanical damage to brain tissue due to traumatic brain injury. The meninges are often oversimplified in current finite element (FE) head models due to their complex anatomy and spatially-variant mechanical behavior. This study performed a systematic review (SR) on the mechanical properties of each individual layer of the meninges to obtain benchmark data for FE modeling and to identify gaps in the current literature. Relevant studies were filtered through three stages: a broad initial search filter, a large language model classifier, and manual verification by a human reviewer. Out of over 25,000 studies initially considered, this review ultimately included 47 studies on the dura mater, 8 on the arachnoid mater, and 7 on the pia mater, representing the largest and most comprehensive SR on the mechanical properties of the meninges. Each layer was found to exhibit nonlinear rate dependence that varies with species, age, location, and orientation. This study revealed that the elastic modulus of pia mater most often used in simplified linear elastic FE models is likely underestimated by an order of magnitude and fails to consider directional dependence. Future studies investigating the mechanical properties of the meninges should focus on a wider range of loading rates as well as age effects for the arachnoid mater and pia mater, as these features are relatively understudied and expected to affect the fidelity of FE predictions.

cond-mat.soft↗

arXiv2025

Predicting Performance of Object Detection Models in Electron Microscopy Using Random Forests

Quantifying prediction uncertainty when applying object detection models to new, unlabeled datasets is critical in applied machine learning. This study introduces an approach to estimate the performance of deep learning-based object detection models for quantifying defects in transmission electron microscopy (TEM) images, focusing on detecting irradiation-induced cavities in TEM images of metal alloys. We developed a random forest regression model that predicts the object detection F1 score, a statistical metric used to evaluate the ability to accurately locate and classify objects of interest. The random forest model uses features extracted from the predictions of the object detection model whose uncertainty is being quantified, enabling fast prediction on new, unlabeled images. The mean absolute error (MAE) for predicting F1 of the trained model on test data is 0.09, and the $R^2$ score is 0.77, indicating there is a significant correlation between the random forest regression model predicted and true defect detection F1 scores. The approach is shown to be robust across three distinct TEM image datasets with varying imaging and material domains. Our approach enables users to estimate the reliability of a defect detection and segmentation model predictions and assess the applicability of the model to their specific datasets, providing valuable information about possible domain shifts and whether the model needs to be fine-tuned or trained on additional data to be maximally effective for the desired use case.

cs.CV↗

arXiv2024

SuperSalt: Equivariant Neural Network Force Fields for Multicomponent Molten Salts System

Molten salts are crucial for clean energy applications, yet exploring their thermophysical properties across diverse chemical space remains challenging. We present the development of a machine learning interatomic potential (MLIP) called SuperSalt, which targets 11-cation chloride melts and captures the essential physics of molten salts with near-DFT accuracy. Using an efficient workflow that integrates systems of one, two, and 11 components, the SuperSalt potential can accurately predict thermophysical properties such as density, bulk modulus, thermal expansion, and heat capacity. Our model is validated across a broad chemical space, demonstrating excellent transferability. We further illustrate how Bayesian optimization combined with SuperSalt can accelerate the discovery of optimal salt compositions with desired properties. This work provides a foundation for future studies that allows easy extensions to more complex systems, such as those containing additional elements. SuperSalt represents a shift towards a more universal, efficient, and accurate modeling of molten salts for advanced energy applications.

cond-mat.mtrl-sci↗

arXiv2024

Best Practices for Fitting Machine Learning Interatomic Potentials for Molten Salts: A Case Study Using NaCl-MgCl2

In this work, we developed a compositionally transferable machine learning interatomic potential using atomic cluster expansion potential and PBE-D3 method for (NaCl)1-x(MgCl2)x molten salt and we showed that it is possible to fit a robust potential for this pseudo-binary system by only including data from x={0, 1/3, 2/3, 1}. We also assessed the performance of several DFT methods including PBE-D3, PBE-D4, R2SCAN-D4, and R2SCAN-rVV10 on unary NaCl and MgCl2 salts. Our results show that the R2SCAN-D4 method calculates the thermophysical properties of NaCl and MgCl2 with an overall modestly better accuracy compared to the other three methods.

cond-mat.mtrl-sci↗

arXiv2024

Beyond designer's knowledge: Generating materials design hypotheses via large language models

Materials design often relies on human-generated hypotheses, a process inherently limited by cognitive constraints such as knowledge gaps and limited ability to integrate and extract knowledge implications, particularly when multidisciplinary expertise is required. This work demonstrates that large language models (LLMs), coupled with prompt engineering, can effectively generate non-trivial materials hypotheses by integrating scientific principles from diverse sources without explicit design guidance by human experts. These include design ideas for high-entropy alloys with superior cryogenic properties and halide solid electrolytes with enhanced ionic conductivity and formability. These design ideas have been experimentally validated in high-impact publications in 2023 not available in the LLM training data, demonstrating the LLM's ability to generate highly valuable and realizable innovative ideas not established in the literature. Our approach primarily leverages materials system charts encoding processing-structure-property relationships, enabling more effective data integration by condensing key information from numerous papers, and evaluation and categorization of numerous hypotheses for human cognition, both through the LLM. This LLM-driven approach opens the door to new avenues of artificial intelligence-driven materials discovery by accelerating design, democratizing innovation, and expanding capabilities beyond the designer's direct knowledge.

cs.LG↗