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Danial Azam

Publications and source records attributed to Danial Azam.

4 recordsLinked to original sources

Surrogate-assisted Bayesian inversion for landscape and basin evolution models

The complex and computationally expensive nature of landscape evolution models pose significant challenges in the inference and optimisation of unknown parameters. Bayesian inference provides a methodology for estimation and uncertainty quantification of unknown model parameters. In our previous work, we developed parallel tempering Bayeslands as a framework for parameter estimation and uncertainty quantification for the Badlands landscape evolution model. Parallel tempering Bayeslands features high-performance computing with dozens of processing cores running in parallel to enhance computational efficiency. Although we use parallel computing, the procedure remains computationally challenging since thousands of samples need to be drawn and evaluated. \textcolor{black}{In large-scale landscape and basin evolution problems, a single model evaluation can take from several minutes to hours, and in some instances, even days. Surrogate-assisted optimisation has been used for several computationally expensive engineering problems which motivate its use in optimisation and inference of complex geoscientific models.} The use of surrogate models can speed up parallel tempering Bayeslands by developing computationally inexpensive models to mimic expensive ones. In this paper, we apply surrogate-assisted parallel tempering where that surrogate mimics a landscape evolution model by estimating the likelihood function from the model. \textcolor{black}{We employ a neural network-based surrogate model that learns from the history of samples generated. } The entire framework is developed in a parallel computing infrastructure to take advantage of parallelism. The results show that the proposed methodology is effective in lowering the overall computational cost significantly while retaining the quality of solutions.

stat.ML

Bayesreef: A Bayesian inference framework for modelling reef growth in response to environmental change and biological dynamics

Estimating the impact of environmental processes on vertical reef development in geological time is a very challenging task. pyReef-Core is a deterministic carbonate stratigraphic forward model designed to simulate the key biological and environmental processes that determine vertical reef accretion and assemblage changes in fossil reef drill cores. We present a Bayesian framework called Bayesreef for the estimation and uncertainty quantification of parameters in pyReef-Core that represent environmental conditions affecting the growth of coral assemblages on geological timescales. We demonstrate the existence of multimodal posterior distributions and investigate the challenges of sampling using Markov chain Monte-Carlo (MCMC) methods, which includes parallel tempering MCMC. We use synthetic reef-core to investigate fundamental issues and then apply the methodology to a selected reef-core from the Great Barrier Reef in Australia. The results show that Bayesreef accurately estimates and provides uncertainty quantification of the selected parameters that represent the environment and ecological conditions in pyReef-Core. Bayesreef provides insights into the complex posterior distributions of parameters in pyReef-Core, which provides the groundwork for future research in this area.

stat.AP

Multi-core parallel tempering Bayeslands for basin and landscape evolution

The Bayesian paradigm is becoming an increasingly popular framework for estimation and uncertainty quantification of unknown parameters in geo-physical inversion problems. Badlands is a basin and landscape evolution forward model for simulating topography evolution at a large range of spatial and time scales. Our previous work presented Bayeslands that used the Bayesian paradigm to make inference for unknown parameters in the Badlands model using Markov chain Monte Carlo (MCMC) sampling. Bayeslands faced challenges in convergence due to multi-modal posterior distributions in the selected parameters of Badlands. Parallel tempering is an advanced MCMC method suited for irregular and multi-modal posterior distributions. In this paper, we extend Bayeslands using parallel tempering (PT-Bayeslands) with high performance computing to address previous limitations in parameter space exploration in the context of the computationally expensive Badlands model. Our results show that PT-Bayeslands not only reduces the computation time, but also provides an improvement of the sampling for multi-modal posterior distributions. This provides an improvement over Bayeslands which used single chain MCMC that face difficulties in convergence and can lead to misleading inference. This motivates its usage in large-scale basin and landscape evolution models.

physics.geo-ph

Bayeslands: A Bayesian inference approach for parameter uncertainty quantification in Badlands

Bayesian inference provides a rigorous methodology for estimation and uncertainty quantification of parameters in geophysical forward models. Badlands (basin and landscape dynamics model) is a landscape evolution model that simulates topography development at various space and time scales. Badlands consists of a number of geophysical parameters that needs estimation with appropriate uncertainty quantification; given the observed present-day ground truth such as surface topography and the stratigraphy of sediment deposition through time. The inference of unknown parameters is challenging due to the scarcity of data, sensitivity of the parameter setting and complexity of the Badlands model. In this paper, we take a Bayesian approach to provide inference using Markov chain Monte Carlo sampling (MCMC). We present \textit{Bayeslands}; a Bayesian framework for Badlands that fuses information obtained from complex forward models with observational data and prior knowledge. As a proof-of-concept, we consider a synthetic and real-world topography with two parameters for Bayeslands inference, namely precipitation and erodibility. The results of the experiments show that Bayeslands yields a promising distribution of the parameters. Moreover, we demonstrate the challenge in sampling irregular and multi-modal posterior distributions using a likelihood surface that has a range of sub-optimal modes.

physics.geo-ph