arXiv subjects

Daniel A. Martin

Publications and source records attributed to Daniel A. Martin.

10 recordsLinked to original sources

arXiv2026

Data-driven inference of brain dynamical states from the r-spectrum of correlation matrices

We present a data-driven framework to characterize large-scale brain dynamical states directly from correlation matrices at the single-subject level. By treating correlation thresholding as a percolation-like probe of connectivity, the approach tracks multiple cluster- and network-level observables and identifies a characteristic percolation threshold, rc, at which these signatures converge. We use $r_c$ as an operational and physically interpretable descriptor of large-scale brain dynamical state. Applied to resting-state fMRI data from a large cohort of healthy individuals (N = 996), the method yields stable, subject-specific estimates that covary systematically with established dynamical indicators such as temporal autocorrelations. Numerical simulations of a whole-brain model with a known critical regime further show that $r_c$ tracks changes in collective dynamics under controlled variations of excitability. By replacing arbitrary threshold selection with a criterion intrinsic to correlation structure, the r-spectra provides a physically grounded approach for comparing brain dynamical states across individuals.

q-bio.NC↗

arXiv2025

Susceptibility for extremely low external fluctuations and critical behaviour of Greenberg-Hastings neuronal model

We consider the scaling behaviour of the fluctuation susceptibility associated with the average activation in the Greenberg-Hastings neural network model and its relation to microscopic spontaneous activation. We found that, as the spontaneous activation probability tends to zero, a clear finite size scaling behaviour in the susceptibility emerges, characterized by critical exponents which follow already known scaling laws. This shows that the spontaneous activation probability plays the role of an external field conjugated to the order parameter of the dynamical activation transition. The roles of different kinds of activation mechanisms around the different dynamical phase transitions exhibited by the model are characterized numerically and using a mean field approximation.

cond-mat.dis-nn↗

arXiv2025

Finite-time scaling on low-dimensional map bifurcations

Recent work has introduced the concept of finite-time scaling to characterize bifurcation diagrams at finite times in deterministic discrete dynamical systems, drawing an analogy with finite-size scaling used to study critical behavior in finite systems. In this work, we extend the finite-time scaling approach in several key directions. First, we present numerical results for 1D maps exhibiting period-doubling bifurcations and discontinuous transitions, analyzing selected paradigmatic examples. We then define two observables, the finite-time susceptibility and the finite-time Lyapunov exponent, that also display consistent scaling near bifurcation points. The method is further generalized to special cases of 2D maps including the 2D Chialvo map, capturing its bifurcation between a fixed point and a periodic orbit, while accounting for discontinuities and asymmetric periodic orbits. These results underscore fundamental connections between temporal and spatial observables in complex systems, suggesting new avenues for studying complex dynamical behavior.

cond-mat.dis-nn↗

arXiv2025

Behavior of the scaling correlation functions under severe subsampling

Scale-invariance is a ubiquitous observation in the dynamics of large distributed complex systems. The computation of its scaling exponents, which provide clues on its origin, is often hampered by the limited available sampling data, making an appropriate mathematical description a challenge. This work investigates the behavior of correlation functions in fractal systems under conditions of severe subsampling. Analytical and numerical results reveal a striking robustness: the correlation functions continue to capture the expected scaling exponents despite substantial data reduction. This behavior is demonstrated numerically for the random 2-D Cantor set and the Sierpinski gasket, both consistent with exact analytical predictions. Similar robustness is observed in 1-D time series both synthetic and experimental, as well as in high-resolution images of a neuronal structure. Overall, these findings are broadly relevant for the structural characterization of biological systems under realistic sampling constraints.

physics.comp-ph↗

arXiv2023

Mean-field solution of the neural dynamics in a Greenberg-Hastings model with excitatory and inhibitory units

We present a mean field solution of the dynamics of a Greenberg-Hastings neural network with both excitatory and inhibitory units. We analyse the dynamical phase transitions that appear in the stationary state as the model parameters are varied. Analytical solutions are compared with numerical simulations of the microscopic model defined on a fully connected network. We found that the stationary state of this system exhibits a first order dynamical phase transition (with the associated hysteresis) when the fraction of inhibitory units $f< f_t \leq 1/2$, even for a finite system. In finite systems, when $f > f_t$ the first order transition is replaced by a pseudo critical one, namely a continuous crossover between regions of low and high activity that resembles the finite size behaviour of a continuous phase transition order parameter. However, in the thermodynamic limit, we found that $f_t\to 1/2$ and the activity for $f\geq f_t$ becomes negligible for any value of $T>0$, while the first order transition for $f<f_t$ remains.

cond-mat.dis-nn↗

arXiv2023

Scale-free correlations in the dynamics of a small (N ~ 10000) cortical network

The advent of novel opto-genetics technology allows the recording of brain activity with a resolution never seen before. The characterisation of these very large data sets offers new challenges as well as unique theory-testing opportunities. Here we discuss whether the spatial and temporal correlation of the collective activity of thousands of neurons are tangled as predicted by the theory of critical phenomena. The analysis shows that both, the correlation length $ξ$ and the correlation time $τ$ scale as predicted as a function of the system size. With some peculiarities that we discuss, the analysis uncovers new evidence consistent with the view that the large scale brain cortical dynamics corresponds to critical phenomena.

q-bio.NC↗

arXiv2023

Finite-size correlation behavior near a critical point: a simple metric for monitoring the state of a neural network

In this article, a correlation metric $κ_C$ is proposed for the inference of the dynamical state of neuronal networks. $κ_C$ is computed from the scaling of the correlation length with the size of the observation region, which shows qualitatively different behavior near and away from the critical point of a continuous phase transition. The implementation is first studied on a neuronal network model, where the results of this new metric coincide with those obtained from neuronal avalanche analysis, thus well characterizing the critical state of the network. The approach is further tested with brain optogenetic recordings in behaving mice from a publicly available database. Potential applications and limitations for its use with currently available optical imaging techniques are discussed.

cond-mat.dis-nn↗

arXiv2021

Apparently similar neuronal dynamics may lead to different collective repertoire

This report is concerned with the relevance of the microscopic rules, that implement individual neuronal activation, in determining the collective dynamics, under variations of the network topology. To fix ideas we study the dynamics of two cellular automaton models, commonly used, rather in-distinctively, as the building blocks of large scale neuronal networks. One model, due to Greenberg \& Hastings, (GH) can be described by evolution equations mimicking an integrate-and-fire process, while the other model, due to Kinouchi \& Copelli, (KC) represents an abstract branching process, where a single active neuron activates a given number of postsynaptic neurons according to a prescribed "activity" branching ratio. Despite the apparent similarity between the local neuronal dynamics of the two models, it is shown that they exhibit very different collective dynamics as a function of the network topology. The GH model shows qualitatively different dynamical regimes as the network topology is varied, including transients to a ground (inactive) state, continuous and discontinuous dynamical phase transitions. In contrast, the KC model only exhibits a continuous phase transition, independently of the network topology. These results highlight the importance of paying attention to the microscopic rules chosen to model the inter-neuronal interactions in large scale numerical simulations, in particular when the network topology is far from a mean field description. One such case is the extensive work being done in the context of the Human Connectome, where a wide variety of types of models are being used to understand the brain collective dynamics.

cond-mat.dis-nn↗

arXiv2020

Box-scaling as a proxy of finite-size correlations

The scaling of correlations as a function of system size provides important hints to understand critical phenomena on a variety of systems. Its study in biological systems offers two challenges: usually they are not of infinite size, and in the majority of cases sizes can not be varied at will. Here we discuss how finite-size scaling can be approximated in an experimental system of fixed and relatively small size by computing correlations inside of a reduced field of view of various sizes (i.e., "box-scaling"). Numerical simulations of a neuronal network are used to verify such approximation, as well as the ferromagnetic 2D Ising model. The numerical results support the validity of the heuristic approach, which should be useful to characterize relevant aspects of critical phenomena in biological systems.

cond-mat.dis-nn↗

arXiv2015

Specific heat anomaly in a supercooled liquid with amorphous boundary conditions

We study the specific heat of a model supercooled liquid confined in a spherical cavity with amorphous boundary conditions. We find the equilibrium specific heat has a cavity-size-dependent peak as a function of temperature. The cavity allows us to perform a finite-size scaling (FSS) analysis, which indicates that the peak persists at a finite temperature in the thermodynamic limit. We attempt to collapse the data onto a FSS curve according to different theoretical scenarios, obtaining reasonable results in two cases: a "not-so-simple" liquid with nonstandard values of the exponents α and ν, and random first-order theory, with two different length scales.

cond-mat.dis-nn↗